© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g9274.t1 |
| Gene name | |
| Location | scaffold_082:45693..46818 |
| Strand | - |
| Gene length (bp) | 1125 |
| Transcript length (bp) | 1125 |
| Coding sequence length (bp) | 1125 |
| Protein length (aa) | 375 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03595 | SLAC1 | Voltage-dependent anion channel | 6.0E-68 | 11 | 363 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
| 2 | 41 | 63 | 22 |
| 3 | 94 | 116 | 22 |
| 4 | 126 | 148 | 22 |
| 5 | 160 | 181 | 21 |
| 6 | 191 | 213 | 22 |
| 7 | 233 | 255 | 22 |
| 8 | 277 | 299 | 22 |
| 9 | 312 | 334 | 22 |
| 10 | 344 | 366 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9274.t1 MSPIRRVTSSVAWGWYAISLSWGGIAVLLHQTPNQFTGLTTIGTIVFVANLVIYTTVTLCLLFEAVRPQKVPKPL EESPNFAARWLHIKKPQDLYFVPVSLLAFATIIFCTSYYGTPHCGRWLILTLNVFFWVYTGVSLLLSILLGWWIP YTGTNHGDHFAIVNILPYFPPMLSGTMAGVLAPNQDPAQAVPMLVGGTTMQGFGFLMFLVILVQSLTEISSEGLP VPNFRPEMFIAVGPPSFTIIAMISMADAAVEKLPDHYISAATSVRTADVLLIVAVVASVFLWLLAFFLFGMAALS MLEALWHRTIRFELIWWCMVFPITGFVLATIDMGEYLASPAIEWVGTGMTIFQVCLWLTITACQLFRWVYKREF* |
| Coding | >Ani_SJS100_1|g9274.t1 ATGTCTCCAATACGCAGGGTTACCTCATCGGTAGCCTGGGGCTGGTATGCTATCTCACTCAGCTGGGGTGGGATA GCGGTGCTGCTGCACCAGACCCCTAACCAGTTTACCGGCCTCACGACCATCGGAACCATCGTCTTTGTCGCCAAC CTAGTCATCTATACCACAGTTACGCTCTGCCTTCTCTTCGAGGCTGTCCGACCACAGAAGGTTCCCAAGCCCTTG GAGGAGTCGCCTAACTTTGCCGCGCGGTGGCTGCATATCAAGAAGCCCCAGGACCTGTACTTTGTCCCTGTTTCG CTGCTCGCCTTCGCGACCATCATCTTCTGCACCTCCTACTACGGCACTCCGCATTGTGGCCGTTGGTTGATCCTC ACCCTGAACGTCTTCTTCTGGGTCTACACCGGAGTGTCGCTGCTGCTGTCGATTCTCTTGGGCTGGTGGATCCCG TATACAGGCACCAATCATGGCGACCACTTCGCCATTGTGAACATCCTACCCTACTTTCCACCCATGCTCAGTGGC ACCATGGCCGGCGTACTGGCCCCAAACCAGGACCCTGCTCAGGCCGTCCCCATGCTGGTGGGTGGCACCACCATG CAAGGATTCGGATTCCTCATGTTCCTGGTCATTTTGGTACAGAGCCTGACGGAGATCTCCAGCGAGGGTCTCCCA GTGCCAAATTTCCGACCGGAGATGTTCATCGCAGTGGGCCCGCCCAGCTTTACAATTATCGCCATGATCAGCATG GCGGATGCGGCGGTTGAGAAACTCCCAGACCACTATATCAGCGCTGCAACCAGTGTGCGCACTGCGGATGTCCTG CTGATTGTTGCTGTGGTCGCGTCGGTCTTCTTATGGCTCTTGGCCTTCTTTCTGTTCGGCATGGCGGCACTGAGC ATGTTGGAGGCTCTGTGGCACCGCACCATTCGCTTCGAGCTTATCTGGTGGTGCATGGTCTTCCCCATCACAGGT TTTGTGCTCGCCACCATCGACATGGGCGAGTATTTGGCTTCACCGGCAATCGAGTGGGTAGGAACGGGGATGACC ATCTTTCAGGTGTGTTTGTGGTTGACGATCACAGCCTGCCAGCTATTTAGATGGGTGTATAAGAGGGAATTTTAG |
| Transcript | >Ani_SJS100_1|g9274.t1 ATGTCTCCAATACGCAGGGTTACCTCATCGGTAGCCTGGGGCTGGTATGCTATCTCACTCAGCTGGGGTGGGATA GCGGTGCTGCTGCACCAGACCCCTAACCAGTTTACCGGCCTCACGACCATCGGAACCATCGTCTTTGTCGCCAAC CTAGTCATCTATACCACAGTTACGCTCTGCCTTCTCTTCGAGGCTGTCCGACCACAGAAGGTTCCCAAGCCCTTG GAGGAGTCGCCTAACTTTGCCGCGCGGTGGCTGCATATCAAGAAGCCCCAGGACCTGTACTTTGTCCCTGTTTCG CTGCTCGCCTTCGCGACCATCATCTTCTGCACCTCCTACTACGGCACTCCGCATTGTGGCCGTTGGTTGATCCTC ACCCTGAACGTCTTCTTCTGGGTCTACACCGGAGTGTCGCTGCTGCTGTCGATTCTCTTGGGCTGGTGGATCCCG TATACAGGCACCAATCATGGCGACCACTTCGCCATTGTGAACATCCTACCCTACTTTCCACCCATGCTCAGTGGC ACCATGGCCGGCGTACTGGCCCCAAACCAGGACCCTGCTCAGGCCGTCCCCATGCTGGTGGGTGGCACCACCATG CAAGGATTCGGATTCCTCATGTTCCTGGTCATTTTGGTACAGAGCCTGACGGAGATCTCCAGCGAGGGTCTCCCA GTGCCAAATTTCCGACCGGAGATGTTCATCGCAGTGGGCCCGCCCAGCTTTACAATTATCGCCATGATCAGCATG GCGGATGCGGCGGTTGAGAAACTCCCAGACCACTATATCAGCGCTGCAACCAGTGTGCGCACTGCGGATGTCCTG CTGATTGTTGCTGTGGTCGCGTCGGTCTTCTTATGGCTCTTGGCCTTCTTTCTGTTCGGCATGGCGGCACTGAGC ATGTTGGAGGCTCTGTGGCACCGCACCATTCGCTTCGAGCTTATCTGGTGGTGCATGGTCTTCCCCATCACAGGT TTTGTGCTCGCCACCATCGACATGGGCGAGTATTTGGCTTCACCGGCAATCGAGTGGGTAGGAACGGGGATGACC ATCTTTCAGGTGTGTTTGTGGTTGACGATCACAGCCTGCCAGCTATTTAGATGGGTGTATAAGAGGGAATTTTAG |
| Gene | >Ani_SJS100_1|g9274.t1 ATGTCTCCAATACGCAGGGTTACCTCATCGGTAGCCTGGGGCTGGTATGCTATCTCACTCAGCTGGGGTGGGATA GCGGTGCTGCTGCACCAGACCCCTAACCAGTTTACCGGCCTCACGACCATCGGAACCATCGTCTTTGTCGCCAAC CTAGTCATCTATACCACAGTTACGCTCTGCCTTCTCTTCGAGGCTGTCCGACCACAGAAGGTTCCCAAGCCCTTG GAGGAGTCGCCTAACTTTGCCGCGCGGTGGCTGCATATCAAGAAGCCCCAGGACCTGTACTTTGTCCCTGTTTCG CTGCTCGCCTTCGCGACCATCATCTTCTGCACCTCCTACTACGGCACTCCGCATTGTGGCCGTTGGTTGATCCTC ACCCTGAACGTCTTCTTCTGGGTCTACACCGGAGTGTCGCTGCTGCTGTCGATTCTCTTGGGCTGGTGGATCCCG TATACAGGCACCAATCATGGCGACCACTTCGCCATTGTGAACATCCTACCCTACTTTCCACCCATGCTCAGTGGC ACCATGGCCGGCGTACTGGCCCCAAACCAGGACCCTGCTCAGGCCGTCCCCATGCTGGTGGGTGGCACCACCATG CAAGGATTCGGATTCCTCATGTTCCTGGTCATTTTGGTACAGAGCCTGACGGAGATCTCCAGCGAGGGTCTCCCA GTGCCAAATTTCCGACCGGAGATGTTCATCGCAGTGGGCCCGCCCAGCTTTACAATTATCGCCATGATCAGCATG GCGGATGCGGCGGTTGAGAAACTCCCAGACCACTATATCAGCGCTGCAACCAGTGTGCGCACTGCGGATGTCCTG CTGATTGTTGCTGTGGTCGCGTCGGTCTTCTTATGGCTCTTGGCCTTCTTTCTGTTCGGCATGGCGGCACTGAGC ATGTTGGAGGCTCTGTGGCACCGCACCATTCGCTTCGAGCTTATCTGGTGGTGCATGGTCTTCCCCATCACAGGT TTTGTGCTCGCCACCATCGACATGGGCGAGTATTTGGCTTCACCGGCAATCGAGTGGGTAGGAACGGGGATGACC ATCTTTCAGGTGTGTTTGTGGTTGACGATCACAGCCTGCCAGCTATTTAGATGGGTGTATAAGAGGGAATTTTAG |