© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g9203.t1 |
| Gene name | |
| Location | scaffold_080:124230..125284 |
| Strand | - |
| Gene length (bp) | 1054 |
| Transcript length (bp) | 870 |
| Coding sequence length (bp) | 870 |
| Protein length (aa) | 290 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05817 | Ribophorin_II | Oligosaccharyltransferase subunit Ribophorin II | 5.9E-28 | 68 | 280 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008250 | oligosaccharyltransferase complex | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006487 | protein N-linked glycosylation | Yes |
| GO:0008152 | metabolic process | No |
| GO:0098796 | membrane protein complex | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0043413 | macromolecule glycosylation | No |
| GO:0043412 | macromolecule modification | No |
| GO:0070085 | glycosylation | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1990234 | transferase complex | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0006486 | protein glycosylation | No |
| GO:0008150 | biological_process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0036211 | protein modification process | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 6 | 28 | 22 |
| 2 | 191 | 213 | 22 |
| 3 | 228 | 250 | 22 |
| 4 | 255 | 277 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9203.t1 MQLWHSVLQLSLLASAAIPTAAASAWGFTDATVSVNTKGAGVGAGVKEVIPDNKALTKPVALGVADTLKVTLTAQ EGRAGKHAHQVYLLLQDPETGLDISYPFNVKDNGKSRLDLTQKDLPIQFLSASEPLEARFLIGSFGESTAYNAAA FQLDVTRNADEPVPTVEVSRYGKLPEIHHIFKSDPQSPPVVITLAFVAMVLATLPVLGGVWLFLGVNVNHLPTAL KSAPIPHVVFLGSLLSIEGIFFLYYTSWTLFQILPAVAVVGSVAFVSGSRALGEVQGRRLAGLR* |
| Coding | >Ani_SJS100_1|g9203.t1 ATGCAGCTGTGGCACTCCGTTCTCCAGCTTTCCTTGCTGGCTTCTGCTGCCATCCCGACCGCGGCTGCCTCCGCA TGGGGATTTACTGATGCCACCGTGTCAGTAAACACCAAAGGCGCAGGTGTCGGCGCGGGCGTGAAGGAGGTTATC CCCGATAACAAAGCTCTCACCAAGCCCGTCGCCCTTGGAGTCGCCGATACCTTGAAAGTTACCTTGACAGCTCAA GAAGGACGCGCCGGAAAGCACGCACACCAAGTGTACCTCCTTCTCCAGGATCCTGAGACCGGATTGGACATTTCA TACCCTTTCAACGTCAAGGACAATGGCAAGTCCAGGCTTGACCTGACCCAGAAAGACCTTCCCATCCAATTCCTT TCCGCCTCCGAGCCTCTCGAGGCCCGATTCCTCATCGGATCCTTCGGCGAGTCGACCGCATACAATGCTGCTGCC TTCCAGCTGGATGTGACCCGTAACGCTGATGAGCCCGTCCCGACCGTCGAGGTTTCGCGGTACGGAAAGCTTCCT GAGATCCACCACATCTTCAAGAGCGACCCTCAGAGCCCTCCCGTTGTGATCACCTTGGCTTTTGTCGCCATGGTG CTTGCTACTCTGCCCGTTCTGGGTGGTGTGTGGCTCTTCCTCGGCGTCAACGTCAACCACCTGCCTACCGCCTTG AAGTCGGCTCCTATTCCTCACGTCGTGTTCCTTGGCTCCCTTCTCTCCATCGAGGGCATCTTCTTCTTGTACTAT ACTTCTTGGACTCTTTTCCAGATCCTCCCTGCTGTCGCAGTGGTCGGATCCGTCGCATTCGTCAGCGGCAGCCGC GCTCTGGGTGAGGTCCAGGGCAGACGGCTTGCCGGACTCAGGTAA |
| Transcript | >Ani_SJS100_1|g9203.t1 ATGCAGCTGTGGCACTCCGTTCTCCAGCTTTCCTTGCTGGCTTCTGCTGCCATCCCGACCGCGGCTGCCTCCGCA TGGGGATTTACTGATGCCACCGTGTCAGTAAACACCAAAGGCGCAGGTGTCGGCGCGGGCGTGAAGGAGGTTATC CCCGATAACAAAGCTCTCACCAAGCCCGTCGCCCTTGGAGTCGCCGATACCTTGAAAGTTACCTTGACAGCTCAA GAAGGACGCGCCGGAAAGCACGCACACCAAGTGTACCTCCTTCTCCAGGATCCTGAGACCGGATTGGACATTTCA TACCCTTTCAACGTCAAGGACAATGGCAAGTCCAGGCTTGACCTGACCCAGAAAGACCTTCCCATCCAATTCCTT TCCGCCTCCGAGCCTCTCGAGGCCCGATTCCTCATCGGATCCTTCGGCGAGTCGACCGCATACAATGCTGCTGCC TTCCAGCTGGATGTGACCCGTAACGCTGATGAGCCCGTCCCGACCGTCGAGGTTTCGCGGTACGGAAAGCTTCCT GAGATCCACCACATCTTCAAGAGCGACCCTCAGAGCCCTCCCGTTGTGATCACCTTGGCTTTTGTCGCCATGGTG CTTGCTACTCTGCCCGTTCTGGGTGGTGTGTGGCTCTTCCTCGGCGTCAACGTCAACCACCTGCCTACCGCCTTG AAGTCGGCTCCTATTCCTCACGTCGTGTTCCTTGGCTCCCTTCTCTCCATCGAGGGCATCTTCTTCTTGTACTAT ACTTCTTGGACTCTTTTCCAGATCCTCCCTGCTGTCGCAGTGGTCGGATCCGTCGCATTCGTCAGCGGCAGCCGC GCTCTGGGTGAGGTCCAGGGCAGACGGCTTGCCGGACTCAGGTAA |
| Gene | >Ani_SJS100_1|g9203.t1 ATGCAGCTGTGGCACTCCGTTCTCCAGCTTTCCTTGCTGGCTTCTGCTGCCATCCCGACCGCGGCTGCCTCCGCA TGGGGATTTACTGATGCCACCGTGTCAGTAAACACCAAAGGCGCAGGTGTCGGCGCGGGCGTGAAGGAGGTGTAC GTTTCTTGTTTTCTACGTTGTTATCTTTCTCTTCTGGAACTTTTGGACTGATGGTATCTCTCAATTGACAGTATC CCCGATAACAAAGCTCTCACCAAGCCCGTCGCCCTTGGAGTCGCCGATACCTTGAAAGTTACCTTGACAGCTCAA GAAGGACGCGCCGGAAAGCACGCACACCAAGTGTACCTCCTTCTCCAGGATCCTGAGACCGGATTGGACATTTCA TACCCTTTCAACGTCAAGGACAATGGCAAGTCCAGGCTTGACCTGGTGGGTGGCCCTAATTACACGCAGAACCAG CTAGGACACAGCTGATGTATACTTCAGACCCAGAAAGACCTTCCCATCCAATTCCTTTCCGCCTCCGAGCCTCTC GAGGCCCGATTCCTCATCGGATCCTTCGGCGAGTCGACCGCATACAATGCTGCTGCCTTCCAGCTGGATGTGACC CGTAACGCTGATGAGCCCGTCCCGACCGTCGAGGTTTCGCGGTACGGAAAGCTTCCTGAGATCCACCACATCTTC AAGAGCGACCCTCAGAGCCCTCCCGTTGTGATCACCTTGGCTTTTGTCGCCATGGTGCTTGCTACTCTGCCCGTT CTGGGTGGTGTGGTAAGTTCTACTCTATACCATTGTTTTCAATACATCACTGACACTGTTCCAGTGGCTCTTCCT CGGCGTCAACGTCAACCACCTGCCTACCGCCTTGAAGTCGGCTCCTATTCCTCACGTCGTGTTCCTTGGCTCCCT TCTCTCCATCGAGGGCATCTTCTTCTTGTACTATACTTCTTGGACTCTTTTCCAGATCCTCCCTGCTGTCGCAGT GGTCGGATCCGTCGCATTCGTCAGCGGCAGCCGCGCTCTGGGTGAGGTCCAGGGCAGACGGCTTGCCGGACTCAG GTAA |