© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g9139.t1 |
| Gene name | |
| Location | scaffold_079:55905..56981 |
| Strand | + |
| Gene length (bp) | 1076 |
| Transcript length (bp) | 963 |
| Coding sequence length (bp) | 963 |
| Protein length (aa) | 321 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09439 | SRPRB | Signal recognition particle receptor beta subunit | 6.5E-25 | 54 | 284 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 5.6E-05 | 55 | 220 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0043167 | ion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043168 | anion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097367 | carbohydrate derivative binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 22 | 44 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9139.t1 MQSHGNWKTLEGIATSLLDGSPIAIAVTVFIAFGLPILLHLIFYRTVASPPSSNFLLLGPSGAGKTALLSLLETK SSRVPPKESRLTHTSQTSTVATISLPASIQTASNRYRSVNDTSLKDISKNPVKYRLWDTPGHGKLRGSQGLATLL SMSTSKDVKSKLRGILFMVDTAALVEAETLRDTASYLYDVLLALQNRALKKGKNSAKAASEIPVLVVANKQDLFT ALPPGSVREKLEAEIDRIRKSKSKGLMDASADAGIDEGEDDILGSTDTRIKFTFRGLEDEIGLIVDIVGGAVKSD EEGNLGAGVRKWEEWIGQCL* |
| Coding | >Ani_SJS100_1|g9139.t1 ATGCAATCTCACGGGAATTGGAAGACCCTTGAGGGAATAGCTACCAGTCTGCTTGATGGCAGTCCCATTGCCATT GCGGTCACAGTTTTCATTGCATTCGGGCTACCTATTCTGCTGCACTTGATCTTCTACCGGACCGTCGCTTCTCCA CCCTCCAGCAATTTCCTACTCCTTGGTCCCAGTGGGGCTGGCAAGACCGCTCTCTTAAGCCTGCTCGAGACTAAA TCGTCACGTGTTCCTCCCAAAGAGTCTCGGCTCACACATACTTCGCAAACGTCAACTGTAGCTACCATCAGCCTT CCCGCCTCCATCCAGACTGCTTCGAACCGCTACCGCTCTGTCAATGACACCTCCCTGAAGGATATTTCCAAGAAC CCCGTCAAGTACCGCTTATGGGATACTCCAGGCCATGGAAAACTGCGGGGATCTCAGGGACTTGCGACATTGCTA TCGATGTCAACATCCAAGGATGTAAAGTCCAAGTTGCGTGGAATCCTATTTATGGTCGACACGGCTGCTCTTGTG GAGGCTGAAACATTGCGAGATACAGCTTCGTATCTGTATGATGTGCTTTTAGCCCTCCAGAACCGGGCTCTTAAG AAGGGCAAGAATTCCGCGAAAGCAGCCTCGGAGATCCCCGTTCTCGTGGTGGCCAACAAGCAAGACCTTTTCACA GCCTTACCTCCAGGTTCCGTGCGTGAAAAGCTGGAGGCGGAGATTGACAGAATAAGGAAGTCCAAGAGCAAAGGT CTCATGGATGCTAGCGCTGACGCTGGAATTGATGAGGGCGAAGACGATATTCTGGGAAGTACTGACACTCGGATT AAGTTCACCTTCAGAGGCCTAGAAGATGAAATTGGGCTGATTGTTGACATTGTCGGCGGCGCAGTCAAGAGTGAT GAGGAGGGCAACCTCGGGGCCGGCGTCAGAAAGTGGGAGGAATGGATCGGTCAATGCCTCTGA |
| Transcript | >Ani_SJS100_1|g9139.t1 ATGCAATCTCACGGGAATTGGAAGACCCTTGAGGGAATAGCTACCAGTCTGCTTGATGGCAGTCCCATTGCCATT GCGGTCACAGTTTTCATTGCATTCGGGCTACCTATTCTGCTGCACTTGATCTTCTACCGGACCGTCGCTTCTCCA CCCTCCAGCAATTTCCTACTCCTTGGTCCCAGTGGGGCTGGCAAGACCGCTCTCTTAAGCCTGCTCGAGACTAAA TCGTCACGTGTTCCTCCCAAAGAGTCTCGGCTCACACATACTTCGCAAACGTCAACTGTAGCTACCATCAGCCTT CCCGCCTCCATCCAGACTGCTTCGAACCGCTACCGCTCTGTCAATGACACCTCCCTGAAGGATATTTCCAAGAAC CCCGTCAAGTACCGCTTATGGGATACTCCAGGCCATGGAAAACTGCGGGGATCTCAGGGACTTGCGACATTGCTA TCGATGTCAACATCCAAGGATGTAAAGTCCAAGTTGCGTGGAATCCTATTTATGGTCGACACGGCTGCTCTTGTG GAGGCTGAAACATTGCGAGATACAGCTTCGTATCTGTATGATGTGCTTTTAGCCCTCCAGAACCGGGCTCTTAAG AAGGGCAAGAATTCCGCGAAAGCAGCCTCGGAGATCCCCGTTCTCGTGGTGGCCAACAAGCAAGACCTTTTCACA GCCTTACCTCCAGGTTCCGTGCGTGAAAAGCTGGAGGCGGAGATTGACAGAATAAGGAAGTCCAAGAGCAAAGGT CTCATGGATGCTAGCGCTGACGCTGGAATTGATGAGGGCGAAGACGATATTCTGGGAAGTACTGACACTCGGATT AAGTTCACCTTCAGAGGCCTAGAAGATGAAATTGGGCTGATTGTTGACATTGTCGGCGGCGCAGTCAAGAGTGAT GAGGAGGGCAACCTCGGGGCCGGCGTCAGAAAGTGGGAGGAATGGATCGGTCAATGCCTCTGA |
| Gene | >Ani_SJS100_1|g9139.t1 ATGCAATCTCACGGGAATTGGAAGACCCTTGAGGGAATAGCTACCAGTCTGCTTGATGGCAGTCCCATTGCCATT GCGGTCACAGTTTTCATTGCATTCGGGCTACCTATTCTGCTGCACTTGATCTTCTACCGGACCGTCGCTTCTCCA CCCTCCAGCAATTTCCTACTCCTTGGTCCCAGTGGGGCTGGCAAGACCGCTCTCTTAAGCCTGGTATGTTCAATC TGACATGGCCTCAATGCACATCACACAATCTTATCTAGCCTTGCTCTGTGCATTCCCCCAAAGTGTAGCCTGTGC TAACAATCACTTTCCGTCTACAATAGCTCGAGACTAAATCGTCACGTGTTCCTCCCAAAGAGTCTCGGCTCACAC ATACTTCGCAAACGTCAACTGTAGCTACCATCAGCCTTCCCGCCTCCATCCAGACTGCTTCGAACCGCTACCGCT CTGTCAATGACACCTCCCTGAAGGATATTTCCAAGAACCCCGTCAAGTACCGCTTATGGGATACTCCAGGCCATG GAAAACTGCGGGGATCTCAGGGACTTGCGACATTGCTATCGATGTCAACATCCAAGGATGTAAAGTCCAAGTTGC GTGGAATCCTATTTATGGTCGACACGGCTGCTCTTGTGGAGGCTGAAACATTGCGAGATACAGCTTCGTATCTGT ATGATGTGCTTTTAGCCCTCCAGAACCGGGCTCTTAAGAAGGGCAAGAATTCCGCGAAAGCAGCCTCGGAGATCC CCGTTCTCGTGGTGGCCAACAAGCAAGACCTTTTCACAGCCTTACCTCCAGGTTCCGTGCGTGAAAAGCTGGAGG CGGAGATTGACAGAATAAGGAAGTCCAAGAGCAAAGGTCTCATGGATGCTAGCGCTGACGCTGGAATTGATGAGG GCGAAGACGATATTCTGGGAAGTACTGACACTCGGATTAAGTTCACCTTCAGAGGCCTAGAAGATGAAATTGGGC TGATTGTTGACATTGTCGGCGGCGCAGTCAAGAGTGATGAGGAGGGCAACCTCGGGGCCGGCGTCAGAAAGTGGG AGGAATGGATCGGTCAATGCCTCTGA |