Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g9120.t1
Gene name
Locationscaffold_079:3794..4602
Strand+
Gene length (bp)808
Transcript length (bp)555
Coding sequence length (bp)555
Protein length (aa) 185

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17135 Ribosomal_L18 Ribosomal protein 60S L18 and 50S L18e 1.3E-94 2 184
PF00828 Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 1.5E-04 58 119

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g9120.t1
MGIDLDRHHVRGTHRKAPKSENVYLQVLVKLYRFLARRTESNFNKVVLRRLFMSRINRPPVSLSRIVSNVTDSHK
GKTIVVIGTITDDNRLLTVPKLSIAALRFTATARARIEKAGGEVLTLDQLALRAPTGANTLLLRGPKNAREAVKH
FGFGPHSHKKPYVRSKGRKFERARGRRRSRGFKV*
Coding >Ani_SJS100_1|g9120.t1
ATGGGTATCGACTTGGACCGCCACCATGTGCGCGGCACCCATCGCAAGGCGCCCAAGAGCGAGAACGTCTACCTG
CAAGTCTTGGTGAAGCTCTACCGATTCCTCGCCCGTCGTACGGAATCCAACTTCAACAAGGTCGTCTTGCGCCGC
CTTTTCATGTCCAGGATCAATCGCCCCCCCGTTTCGCTCTCGCGCATTGTATCCAATGTGACCGACTCCCACAAG
GGCAAGACTATCGTTGTGATCGGCACCATCACTGACGACAACCGTCTTCTGACTGTCCCGAAGCTGTCTATTGCA
GCACTTCGTTTCACGGCTACTGCTCGGGCCAGGATTGAGAAGGCTGGTGGTGAGGTCTTGACTTTGGACCAGCTC
GCTCTGCGTGCCCCTACTGGAGCAAACACTCTCCTTCTCCGCGGACCTAAGAATGCTCGGGAGGCAGTGAAGCAC
TTCGGTTTCGGCCCCCACAGCCACAAGAAACCCTACGTTCGCAGCAAGGGACGTAAGTTCGAGAGAGCCCGTGGA
CGCAGAAGGTCTCGCGGTTTCAAGGTGTAA
Transcript >Ani_SJS100_1|g9120.t1
ATGGGTATCGACTTGGACCGCCACCATGTGCGCGGCACCCATCGCAAGGCGCCCAAGAGCGAGAACGTCTACCTG
CAAGTCTTGGTGAAGCTCTACCGATTCCTCGCCCGTCGTACGGAATCCAACTTCAACAAGGTCGTCTTGCGCCGC
CTTTTCATGTCCAGGATCAATCGCCCCCCCGTTTCGCTCTCGCGCATTGTATCCAATGTGACCGACTCCCACAAG
GGCAAGACTATCGTTGTGATCGGCACCATCACTGACGACAACCGTCTTCTGACTGTCCCGAAGCTGTCTATTGCA
GCACTTCGTTTCACGGCTACTGCTCGGGCCAGGATTGAGAAGGCTGGTGGTGAGGTCTTGACTTTGGACCAGCTC
GCTCTGCGTGCCCCTACTGGAGCAAACACTCTCCTTCTCCGCGGACCTAAGAATGCTCGGGAGGCAGTGAAGCAC
TTCGGTTTCGGCCCCCACAGCCACAAGAAACCCTACGTTCGCAGCAAGGGACGTAAGTTCGAGAGAGCCCGTGGA
CGCAGAAGGTCTCGCGGTTTCAAGGTGTAA
Gene >Ani_SJS100_1|g9120.t1
ATGGGTATGTTCAAATCGACGTGGTGATATATTCATTTGCTGAAGAATCTCGCGGGTTGCGACTTTTTTTTTTGG
CTCAACACCATGGACATTTCCTGTTTTCACTTGGCAAATACTGATTTTGGGATACAGGTATCGACTTGGACCGCC
ACCATGTGCGCGGCACCCATCGCAAGGCGCCCAAGAGCGAGAACGTCTACCTGCAAGTCTTGGTGAAGCTCTACC
GATTCCTCGCCCGTATGTCTCCGTCTTCTGAGTGCAGCCGATTTCAGCAATGGGAAACTGATTGGTGGTGGTATT
TTTACAGGTCGTACGGAATCCAACTTCAACAAGGTCGTCTTGCGCCGCCTTTTCATGTCCAGGATCAATCGCCCC
CCCGTTTCGCTCTCGCGCATTGTATCCAATGTGACCGACTCCCACAAGGGCAAGACTATCGTTGTGATCGGCACC
ATCACTGACGACAACCGTCTTCTGACTGTCCCGAAGCTGTCTATTGCAGCACTTCGTTTCACGGCTACTGCTCGG
GCCAGGATTGAGAAGGCTGGTGGTGAGGTCTTGACTTTGGACCAGCTCGCTCTGCGTGCCCCTACTGGAGCAAAC
ACTCTCCTTCTCCGCGGACCTAAGAATGCTCGGGAGGCAGTGAAGCACTTCGGTTTCGGCCCCCACAGCCACAAG
GCATGTTATATACTCTTCGCGCAATATATGGTTTGCATAACTAACCTTGAAACAGAAACCCTACGTTCGCAGCAA
GGGACGTAAGTTCGAGAGAGCCCGTGGACGCAGAAGGTCTCGCGGTTTCAAGGTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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