© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g9101.t1 |
| Gene name | |
| Location | scaffold_078:87051..87839 |
| Strand | - |
| Gene length (bp) | 788 |
| Transcript length (bp) | 555 |
| Coding sequence length (bp) | 555 |
| Protein length (aa) | 185 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17832 | Pre-PUA | Pre-PUA-like domain | 7.5E-20 | 2 | 86 |
| PF01472 | PUA | PUA domain | 1.5E-13 | 90 | 168 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003676 | nucleic acid binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9101.t1 MFKKDIPPSNRSKVKSSVQRGLRQRFLDTYPGFEPYIEEVLPKKAQLDAVKLPERSTLYTHNNTPLFYQPMDGPP IPHLKLLHAYPDALPTIQIDRGAIRFVLSGAALMAPGLTSAGGRLPDVENGEKEIPAGEVVAVKAEGKEFVCLVG VLKVGTEEIKKVGKGVVLDEGHYLGDGLWRYHLD* |
| Coding | >Ani_SJS100_1|g9101.t1 ATGTTTAAGAAGGACATCCCCCCCAGCAACCGCTCAAAAGTCAAATCCTCCGTGCAGCGCGGCCTCCGCCAACGG TTCCTAGACACATACCCCGGCTTCGAACCCTACATTGAAGAAGTCCTACCGAAGAAGGCCCAACTGGATGCCGTG AAGCTTCCGGAAAGATCAACCCTCTACACCCACAACAACACCCCCCTCTTCTACCAACCCATGGACGGCCCACCC ATCCCGCACCTGAAACTGCTCCACGCATACCCTGACGCTCTCCCGACAATCCAAATCGACCGCGGCGCCATCCGC TTCGTGCTCTCGGGCGCGGCGCTCATGGCGCCTGGGTTAACGAGTGCCGGGGGTAGATTGCCTGATGTCGAGAAT GGGGAGAAGGAGATCCCTGCGGGTGAGGTCGTGGCGGTGAAGGCGGAGGGGAAGGAGTTTGTTTGTCTGGTCGGG GTGTTGAAGGTGGGTACGGAGGAGATTAAGAAGGTCGGGAAGGGTGTGGTGCTTGATGAGGGGCATTATTTGGGG GATGGGTTGTGGAGGTATCATCTTGATTGA |
| Transcript | >Ani_SJS100_1|g9101.t1 ATGTTTAAGAAGGACATCCCCCCCAGCAACCGCTCAAAAGTCAAATCCTCCGTGCAGCGCGGCCTCCGCCAACGG TTCCTAGACACATACCCCGGCTTCGAACCCTACATTGAAGAAGTCCTACCGAAGAAGGCCCAACTGGATGCCGTG AAGCTTCCGGAAAGATCAACCCTCTACACCCACAACAACACCCCCCTCTTCTACCAACCCATGGACGGCCCACCC ATCCCGCACCTGAAACTGCTCCACGCATACCCTGACGCTCTCCCGACAATCCAAATCGACCGCGGCGCCATCCGC TTCGTGCTCTCGGGCGCGGCGCTCATGGCGCCTGGGTTAACGAGTGCCGGGGGTAGATTGCCTGATGTCGAGAAT GGGGAGAAGGAGATCCCTGCGGGTGAGGTCGTGGCGGTGAAGGCGGAGGGGAAGGAGTTTGTTTGTCTGGTCGGG GTGTTGAAGGTGGGTACGGAGGAGATTAAGAAGGTCGGGAAGGGTGTGGTGCTTGATGAGGGGCATTATTTGGGG GATGGGTTGTGGAGGTATCATCTTGATTGA |
| Gene | >Ani_SJS100_1|g9101.t1 ATGTTTAAGAAGGAGTGAGTGAAAACCAGCATAGTCATTACTACAGAACACCCATCAACTTCATCCATTTATTCC CCAATCCACCACCCTCCCTACAGCCCAATCCCTCCTCACAGCTAGCTACCAAGCAGAACAACCAACTAACAACTC AAACCACCATGATAACAGCATCCCCCCCAGCAACCGCTCAAAAGTCAAATCCTCCGTGCAGCGCGGCCTCCGCCA ACGGTTCCTAGACACATACCCCGGCTTCGAACCCTACATTGAAGAAGTCCTACCGAAGAAGGCCCAACTGGATGC CGTGAAGCTGTACGGTCCCCCAATACCTACCTTCCTTCATACCCTTTCCCCCCTTCCCACAAACTAACTAACCCA ACCCAACCCATAGTCCGGAAAGATCAACCCTCTACACCCACAACAACACCCCCCTCTTCTACCAACCCATGGACG GCCCACCCATCCCGCACCTGAAACTGCTCCACGCATACCCTGACGCTCTCCCGACAATCCAAATCGACCGCGGCG CCATCCGCTTCGTGCTCTCGGGCGCGGCGCTCATGGCGCCTGGGTTAACGAGTGCCGGGGGTAGATTGCCTGATG TCGAGAATGGGGAGAAGGAGATCCCTGCGGGTGAGGTCGTGGCGGTGAAGGCGGAGGGGAAGGAGTTTGTTTGTC TGGTCGGGGTGTTGAAGGTGGGTACGGAGGAGATTAAGAAGGTCGGGAAGGGTGTGGTGCTTGATGAGGGGCATT ATTTGGGGGATGGGTTGTGGAGGTATCATCTTGATTGA |