Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g888.t1
Gene name
Locationscaffold_003:224649..225429
Strand-
Gene length (bp)780
Transcript length (bp)348
Coding sequence length (bp)348
Protein length (aa) 116

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 9.1E-19 45 112

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 48 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g888.t1
MSTDPKIQDLLNKPKSELTEYEVSLVEEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLE
NVKEMWTEKPKGGNGKGVNKDRFISKMFLRGDSVILVLLS*
Coding >Ani_SJS100_1|g888.t1
ATGTCGACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGAGCTCACTGAATACGAGGTCTCCCTC
GTCGAGGAACATGAGCTCACTGCCGGTCCTTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTG
ATCTCATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACCGCCACTGCAACATGGTTCTGGAG
AACGTCAAGGAGATGTGGACCGAGAAGCCCAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGC
AAGATGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGA
Transcript >Ani_SJS100_1|g888.t1
ATGTCGACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGAGCTCACTGAATACGAGGTCTCCCTC
GTCGAGGAACATGAGCTCACTGCCGGTCCTTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTG
ATCTCATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACCGCCACTGCAACATGGTTCTGGAG
AACGTCAAGGAGATGTGGACCGAGAAGCCCAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGC
AAGATGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGA
Gene >Ani_SJS100_1|g888.t1
ATGTCGACCGATCCCAAGATCCAGTAATTACCCCTCTTTTCCTACCCTCCTTTACATCCCGATGAGTCATTAGCT
CTTGTCATGGTGTAATCCGCTCCTCAACCTGCCGGACCTCATTGCTAACCTTGTCTTGCAATTCATTAGGGACCT
GCTCAACAAGCCTAAGAGCGAGCTCACGTACGTTATCGAACCCCTCCTCTTCTTTCCGGCTTTTATCAAAGCTTT
CTATTCCCGTGTTCCTATCACATGATGCCCGATCCCCTTTGCACACCTATCAGTCCAACTACCCATGCCCACCAC
AACCCATGATATCCGGATAGTGTCCCGCGCGCCTAATTCTCATCGCGCCACATCATATCTATCTATCTACCAACC
CATCATCGCCGTCCATTCGCTAACCTGGCCCCTCATTCAGTGAATACGAGGTCTCCCTCGTCGAGGAACATGAGC
TCACTGCCGGTCCTTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTGATCTCATGCCGGAACA
ACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACCGCCACTGCAACATGGTTCTGGAGAACGTCAAGGAGATGT
GGACCGAGAAGCCCAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGCAAGATGTAAGCATCGC
CATTACCTACACTCACCCTTTCCCCCCGCCAGAAACAATCCTAACCCAACCTTTTATCGTAGGTTCCTCCGTGGT
GACTCCGTCATCCTCGTCCTGCTCAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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