© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g8850.t1 |
| Gene name | |
| Location | scaffold_073:123751..124998 |
| Strand | + |
| Gene length (bp) | 1247 |
| Transcript length (bp) | 942 |
| Coding sequence length (bp) | 942 |
| Protein length (aa) | 314 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01269 | Fibrillarin | Fibrillarin | 3.5E-104 | 77 | 310 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0008168 | methyltransferase activity | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0016072 | rRNA metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006396 | RNA processing | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g8850.t1 MAFGGPRGGGRGGGRGAPRGGGGGRGGRGGLGAGGRGRGGGRGAPRGGRGAPRGRGGPRGGGRGGAKGAKGGAKV IIEPHRHAGVFVARGGKEDLLVTKNLTPGEAVYGEKRISVESPAEEDGTVTKTEYRVWNPFRSKLAAGILGGLDD IYMRPGSKVLYLGSASGTSVSHVADIVGPTGNVYAVEFSHRSGRDLIGMATHRTNVIPIVEDARHPLRYRMLVPM VDVIFADVAQPDQARIVGLNAHMFLKEGGGVIVSVKANCIDSTAKPEVVFAREVQKMREERIKPREQLTLEPFER DHCIVSGIYKRSA* |
| Coding | >Ani_SJS100_1|g8850.t1 ATGGCATTCGGTGGTCCTCGTGGTGGTGGCCGTGGTGGTGGCCGTGGTGCTCCTCGTGGAGGTGGTGGCGGCCGT GGTGGTAGAGGCGGTCTTGGTGCCGGTGGTCGTGGTCGCGGCGGTGGCCGTGGTGCTCCCCGCGGTGGTCGTGGT GCCCCCCGTGGCCGTGGTGGTCCTCGCGGCGGTGGTCGCGGCGGTGCTAAGGGTGCCAAGGGTGGTGCTAAGGTC ATCATTGAACCCCACCGTCACGCTGGTGTCTTCGTCGCCCGTGGTGGTAAGGAAGATTTGCTCGTCACCAAGAAC CTTACTCCCGGAGAGGCCGTCTACGGTGAGAAGCGCATCTCTGTTGAGTCCCCCGCTGAGGAGGATGGCACTGTG ACCAAGACCGAATACCGTGTCTGGAACCCCTTCCGTTCCAAGTTGGCTGCCGGTATCCTGGGTGGTCTGGATGAC ATCTACATGCGCCCTGGCTCCAAGGTCCTGTATCTCGGTTCCGCCAGCGGTACCTCCGTCAGTCACGTTGCCGAT ATCGTCGGACCTACTGGTAACGTCTACGCTGTTGAGTTCTCCCACCGTTCCGGCCGTGACTTGATCGGCATGGCT ACCCACCGCACCAACGTTATCCCCATCGTCGAGGACGCCAGACACCCTCTTCGTTACCGTATGCTCGTCCCCATG GTCGATGTCATCTTCGCCGATGTTGCCCAGCCCGACCAGGCCCGTATTGTCGGCCTGAACGCCCACATGTTCCTC AAGGAGGGCGGTGGTGTCATTGTCTCCGTCAAGGCCAACTGTATCGACAGTACCGCTAAGCCCGAGGTTGTGTTC GCTCGTGAAGTCCAGAAGATGAGAGAGGAGCGGATCAAGCCCAGGGAACAGCTGACCCTGGAGCCTTTCGAACGT GACCACTGTATAGTGTCTGGTATCTACAAGCGCTCTGCATGA |
| Transcript | >Ani_SJS100_1|g8850.t1 ATGGCATTCGGTGGTCCTCGTGGTGGTGGCCGTGGTGGTGGCCGTGGTGCTCCTCGTGGAGGTGGTGGCGGCCGT GGTGGTAGAGGCGGTCTTGGTGCCGGTGGTCGTGGTCGCGGCGGTGGCCGTGGTGCTCCCCGCGGTGGTCGTGGT GCCCCCCGTGGCCGTGGTGGTCCTCGCGGCGGTGGTCGCGGCGGTGCTAAGGGTGCCAAGGGTGGTGCTAAGGTC ATCATTGAACCCCACCGTCACGCTGGTGTCTTCGTCGCCCGTGGTGGTAAGGAAGATTTGCTCGTCACCAAGAAC CTTACTCCCGGAGAGGCCGTCTACGGTGAGAAGCGCATCTCTGTTGAGTCCCCCGCTGAGGAGGATGGCACTGTG ACCAAGACCGAATACCGTGTCTGGAACCCCTTCCGTTCCAAGTTGGCTGCCGGTATCCTGGGTGGTCTGGATGAC ATCTACATGCGCCCTGGCTCCAAGGTCCTGTATCTCGGTTCCGCCAGCGGTACCTCCGTCAGTCACGTTGCCGAT ATCGTCGGACCTACTGGTAACGTCTACGCTGTTGAGTTCTCCCACCGTTCCGGCCGTGACTTGATCGGCATGGCT ACCCACCGCACCAACGTTATCCCCATCGTCGAGGACGCCAGACACCCTCTTCGTTACCGTATGCTCGTCCCCATG GTCGATGTCATCTTCGCCGATGTTGCCCAGCCCGACCAGGCCCGTATTGTCGGCCTGAACGCCCACATGTTCCTC AAGGAGGGCGGTGGTGTCATTGTCTCCGTCAAGGCCAACTGTATCGACAGTACCGCTAAGCCCGAGGTTGTGTTC GCTCGTGAAGTCCAGAAGATGAGAGAGGAGCGGATCAAGCCCAGGGAACAGCTGACCCTGGAGCCTTTCGAACGT GACCACTGTATAGTGTCTGGTATCTACAAGCGCTCTGCATGA |
| Gene | >Ani_SJS100_1|g8850.t1 ATGGCATTCGGTGGTCCTCGTGGTGGTGGCCGTGGTGGTGGCCGTGGTGCTCCTCGTGGAGGTGGTGGCGGCCGT GGTGGTAGAGGTTTGTTCACCATCGATTGATTTCATCTTGGGAGAAACGTGGCAGGCAGGCATATGTGATCTTTT CGCATTGTTGTTGTCGATCATGTTGGAACTTGCTTCTTGTGACGGAGAACCTTGTTCTTGTCCCAGAGCATATCA GGTTTTCCAATATGAGCGACTCGACTCGCGTGCCGGAACTGCGGTTATCCCTTCACGGAAAAAAGGAACATGTCG CTAATCTTTGCACGTTCTATAGGCGGTCTTGGTGCCGGTGGTCGTGGTCGCGGCGGTGGCCGTGGTGCTCCCCGC GGTGGTCGTGGTGCCCCCCGTGGCCGTGGTGGTCCTCGCGGCGGTGGTCGCGGCGGTGCTAAGGGTGCCAAGGGT GGTGCTAAGGTCATCATTGTAGGTGTTTCCTGTTAAATCGATCGAGAAGAGAGACGTTGTATGGAGTCTAACCGG GATTCGTCTAGGAACCCCACCGTCACGCTGGTGTCTTCGTCGCCCGTGGTGGTAAGGAAGATTTGCTCGTCACCA AGAACCTTACTCCCGGAGAGGCCGTCTACGGTGAGAAGCGCATCTCTGTTGAGTCCCCCGCTGAGGAGGATGGCA CTGTGACCAAGACCGAATACCGTGTCTGGAACCCCTTCCGTTCCAAGTTGGCTGCCGGTATCCTGGGTGGTCTGG ATGACATCTACATGCGCCCTGGCTCCAAGGTCCTGTATCTCGGTTCCGCCAGCGGTACCTCCGTCAGTCACGTTG CCGATATCGTCGGACCTACTGGTAACGTCTACGCTGTTGAGTTCTCCCACCGTTCCGGCCGTGACTTGATCGGCA TGGCTACCCACCGCACCAACGTTATCCCCATCGTCGAGGACGCCAGACACCCTCTTCGTTACCGTATGCTCGTCC CCATGGTCGATGTCATCTTCGCCGATGTTGCCCAGCCCGACCAGGCCCGTATTGTCGGCCTGAACGCCCACATGT TCCTCAAGGAGGGCGGTGGTGTCATTGTCTCCGTCAAGGCCAACTGTATCGACAGTACCGCTAAGCCCGAGGTTG TGTTCGCTCGTGAAGTCCAGAAGATGAGAGAGGAGCGGATCAAGCCCAGGGAACAGCTGACCCTGGAGCCTTTCG AACGTGACCACTGTATAGTGTCTGGTATCTACAAGCGCTCTGCATGA |