© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g8735.t1 |
| Gene name | |
| Location | scaffold_071:116044..117271 |
| Strand | - |
| Gene length (bp) | 1227 |
| Transcript length (bp) | 1227 |
| Coding sequence length (bp) | 1227 |
| Protein length (aa) | 409 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16131 | Torus | Torus domain | 1.4E-44 | 60 | 167 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.6E-08 | 202 | 254 |
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1.5E-04 | 131 | 149 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| Orthofinder run ID | 3 |
| Orthogroup | 8879 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g8735.t1 MAEATPPTETVTPPTEEVVEDQQQTQQQENETTEETTALTTTADGAVEPQKKTKKIIRRKRRPARPQVDPATIKS EPPPQVGTIFNIWYNKWSGGDRENSYLSKTAAPSRCNIARDSGYTRADKVPGSYFCLFFARGICPRGAECEYLHR LPTLHDIFNPNVDCFGRDKFSDYRDDMGGVGSFMRQNRTLYVGRIHVTDSIEEVVARNFQEWGQIDRIRVLTSRG VAFVTYTNEANAQFAKEAMAHQSLDHNEILNVRWATVDPNPLAQKREARRLEEQAAEAVRRALPAEFVAELEGRD PEAKKRKKIEGSYGLQGYEPPDEVWFSRAKELEDANAIAQLEAPEQPLMIEGASETAAAAPQEEQAGGIFSSSAV AALKGLAGGAVTTQQAPKAAGPLVAYGSDDDSE* |
| Coding | >Ani_SJS100_1|g8735.t1 ATGGCTGAAGCAACACCCCCAACTGAAACAGTAACCCCTCCTACGGAGGAGGTCGTCGAAGACCAACAACAAACC CAGCAACAAGAAAACGAAACAACAGAAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGCCCAGCACGCCCACAAGTCGACCCAGCGACAATCAAATCC GAGCCCCCACCCCAAGTCGGCACAATCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC TACCTAAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAGCGGCTACACACGGGCCGATAAAGTG CCCGGGTCATACTTCTGCCTGTTCTTCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAATACCTGCACCGT TTACCAACACTGCACGACATATTCAACCCGAACGTGGATTGCTTTGGACGGGACAAGTTCAGTGACTATCGGGAT GATATGGGTGGTGTAGGATCATTCATGAGACAGAATCGCACGTTGTATGTGGGACGGATTCATGTGACGGACTCG ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCGGATTCGGGTGCTTACGTCCCGGGGT GTTGCGTTCGTGACGTATACAAATGAGGCGAATGCGCAGTTTGCGAAGGAGGCGATGGCGCATCAGAGTTTGGAT CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTTGGCGCAGAAGAGGGAGGCGAGACGG CTGGAAGAGCAGGCTGCTGAGGCGGTTAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAAGGCAGGGAT CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGGGTATGAGCCGCCGGATGAGGTGTGG TTCTCGCGTGCGAAGGAGTTGGAGGATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT GAGGGTGCCTCTGAGACTGCTGCTGCTGCTCCGCAGGAGGAACAGGCCGGAGGGATCTTCTCCAGCTCTGCTGTT GCGGCGTTGAAGGGCCTGGCTGGCGGTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG TACGGGAGTGACGATGATAGCGAGTAA |
| Transcript | >Ani_SJS100_1|g8735.t1 ATGGCTGAAGCAACACCCCCAACTGAAACAGTAACCCCTCCTACGGAGGAGGTCGTCGAAGACCAACAACAAACC CAGCAACAAGAAAACGAAACAACAGAAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGCCCAGCACGCCCACAAGTCGACCCAGCGACAATCAAATCC GAGCCCCCACCCCAAGTCGGCACAATCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC TACCTAAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAGCGGCTACACACGGGCCGATAAAGTG CCCGGGTCATACTTCTGCCTGTTCTTCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAATACCTGCACCGT TTACCAACACTGCACGACATATTCAACCCGAACGTGGATTGCTTTGGACGGGACAAGTTCAGTGACTATCGGGAT GATATGGGTGGTGTAGGATCATTCATGAGACAGAATCGCACGTTGTATGTGGGACGGATTCATGTGACGGACTCG ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCGGATTCGGGTGCTTACGTCCCGGGGT GTTGCGTTCGTGACGTATACAAATGAGGCGAATGCGCAGTTTGCGAAGGAGGCGATGGCGCATCAGAGTTTGGAT CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTTGGCGCAGAAGAGGGAGGCGAGACGG CTGGAAGAGCAGGCTGCTGAGGCGGTTAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAAGGCAGGGAT CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGGGTATGAGCCGCCGGATGAGGTGTGG TTCTCGCGTGCGAAGGAGTTGGAGGATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT GAGGGTGCCTCTGAGACTGCTGCTGCTGCTCCGCAGGAGGAACAGGCCGGAGGGATCTTCTCCAGCTCTGCTGTT GCGGCGTTGAAGGGCCTGGCTGGCGGTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG TACGGGAGTGACGATGATAGCGAGTAA |
| Gene | >Ani_SJS100_1|g8735.t1 ATGGCTGAAGCAACACCCCCAACTGAAACAGTAACCCCTCCTACGGAGGAGGTCGTCGAAGACCAACAACAAACC CAGCAACAAGAAAACGAAACAACAGAAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGCCCAGCACGCCCACAAGTCGACCCAGCGACAATCAAATCC GAGCCCCCACCCCAAGTCGGCACAATCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC TACCTAAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAGCGGCTACACACGGGCCGATAAAGTG CCCGGGTCATACTTCTGCCTGTTCTTCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAATACCTGCACCGT TTACCAACACTGCACGACATATTCAACCCGAACGTGGATTGCTTTGGACGGGACAAGTTCAGTGACTATCGGGAT GATATGGGTGGTGTAGGATCATTCATGAGACAGAATCGCACGTTGTATGTGGGACGGATTCATGTGACGGACTCG ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCGGATTCGGGTGCTTACGTCCCGGGGT GTTGCGTTCGTGACGTATACAAATGAGGCGAATGCGCAGTTTGCGAAGGAGGCGATGGCGCATCAGAGTTTGGAT CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTTGGCGCAGAAGAGGGAGGCGAGACGG CTGGAAGAGCAGGCTGCTGAGGCGGTTAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAAGGCAGGGAT CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGGGTATGAGCCGCCGGATGAGGTGTGG TTCTCGCGTGCGAAGGAGTTGGAGGATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT GAGGGTGCCTCTGAGACTGCTGCTGCTGCTCCGCAGGAGGAACAGGCCGGAGGGATCTTCTCCAGCTCTGCTGTT GCGGCGTTGAAGGGCCTGGCTGGCGGTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG TACGGGAGTGACGATGATAGCGAGTAA |