Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g8542.t1
Gene name
Location	scaffold_068:112634..113642
Strand	+
Gene length (bp)	1008
Transcript length (bp)	1008
Coding sequence length (bp)	1008
Protein length (aa)	336

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01370	Epimerase	NAD dependent epimerase/dehydratase family	2.0E-22	7	187
PF16363	GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	2.1E-13	8	174
PF02719	Polysacc_synt_2	Polysaccharide biosynthesis protein	2.9E-07	41	118
PF04321	RmlD_sub_bind	RmlD substrate binding domain	3.9E-08	7	181
PF07993	NAD_binding_4	Male sterility protein	3.1E-06	81	176

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 29	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g8542.t1 MSSEYDVLVTGSAGHLGTALMLCLPSMGYNPFGIDILSSPTTTAVGSVCDRTFIASIFRNNPIKHVLHTATLHKP HICSHTKEEFISTNIAGTLILLEESSKFKDRIESFIFFSTTSAFGKALNPKPGFPAAWIDESVVPEPKNIYGVTK VAAEDMCALVQKESGMPVLVLRTSRFFPEEDDDEDRRTAMSDENLKVLELAYRRCDIEDIVSASVCSMRKAKDIR WGKYIISAPPPFSNDGSTLDALDRNPAGVIAKAFPEVDAIFKKKGWKHLTRIDRVYDSSKAVKELGWIPRYTFEK TMERLARDEQWRSDLTARVGKKGYHAVSTGVYTKR*
Coding	>Ani_SJS100_1\|g8542.t1 ATGTCCTCAGAGTATGACGTTCTGGTCACTGGCTCAGCTGGTCATCTGGGTACAGCTTTAATGCTTTGCCTACCT TCGATGGGCTACAACCCTTTCGGCATCGACATTCTCTCCTCTCCGACGACGACAGCCGTGGGCTCTGTCTGCGAT CGCACTTTCATTGCATCTATTTTCCGCAACAACCCCATTAAGCATGTCCTCCATACGGCAACATTGCATAAGCCG CACATATGCAGCCATACTAAGGAGGAGTTCATCTCAACCAACATTGCGGGCACTCTGATCCTTCTTGAAGAATCC TCCAAGTTCAAGGATAGGATCGAGAGCTTCATCTTTTTCAGTACAACCAGCGCCTTTGGTAAGGCCTTAAACCCG AAGCCCGGCTTCCCTGCCGCTTGGATCGATGAGTCTGTCGTACCCGAGCCAAAGAATATCTATGGCGTGACGAAA GTTGCAGCCGAGGATATGTGCGCGCTGGTACAAAAGGAAAGCGGAATGCCTGTCCTAGTTCTTCGAACAAGTCGC TTTTTCCCAGAGGAAGACGATGATGAAGACCGTCGTACGGCGATGAGCGATGAAAATTTGAAGGTCCTGGAATTA GCCTACCGCAGATGCGACATTGAAGATATTGTCAGCGCGTCGGTTTGCTCAATGAGAAAGGCCAAGGATATCCGG TGGGGAAAGTATATTATAAGCGCTCCGCCCCCTTTCAGCAACGACGGAAGCACACTCGATGCTTTAGATCGGAAT CCCGCTGGGGTGATTGCCAAAGCTTTTCCGGAAGTCGATGCTATTTTCAAGAAGAAAGGGTGGAAGCATCTTACG AGGATTGATCGAGTCTATGATTCCAGCAAGGCTGTGAAAGAGCTGGGGTGGATTCCGAGATATACATTTGAAAAA ACGATGGAGAGGCTGGCGCGCGATGAGCAGTGGAGGAGTGACCTAACTGCTAGGGTGGGCAAGAAAGGTTATCAC GCTGTGAGCACTGGGGTGTATACCAAGCGATGA
Transcript	>Ani_SJS100_1\|g8542.t1 ATGTCCTCAGAGTATGACGTTCTGGTCACTGGCTCAGCTGGTCATCTGGGTACAGCTTTAATGCTTTGCCTACCT TCGATGGGCTACAACCCTTTCGGCATCGACATTCTCTCCTCTCCGACGACGACAGCCGTGGGCTCTGTCTGCGAT CGCACTTTCATTGCATCTATTTTCCGCAACAACCCCATTAAGCATGTCCTCCATACGGCAACATTGCATAAGCCG CACATATGCAGCCATACTAAGGAGGAGTTCATCTCAACCAACATTGCGGGCACTCTGATCCTTCTTGAAGAATCC TCCAAGTTCAAGGATAGGATCGAGAGCTTCATCTTTTTCAGTACAACCAGCGCCTTTGGTAAGGCCTTAAACCCG AAGCCCGGCTTCCCTGCCGCTTGGATCGATGAGTCTGTCGTACCCGAGCCAAAGAATATCTATGGCGTGACGAAA GTTGCAGCCGAGGATATGTGCGCGCTGGTACAAAAGGAAAGCGGAATGCCTGTCCTAGTTCTTCGAACAAGTCGC TTTTTCCCAGAGGAAGACGATGATGAAGACCGTCGTACGGCGATGAGCGATGAAAATTTGAAGGTCCTGGAATTA GCCTACCGCAGATGCGACATTGAAGATATTGTCAGCGCGTCGGTTTGCTCAATGAGAAAGGCCAAGGATATCCGG TGGGGAAAGTATATTATAAGCGCTCCGCCCCCTTTCAGCAACGACGGAAGCACACTCGATGCTTTAGATCGGAAT CCCGCTGGGGTGATTGCCAAAGCTTTTCCGGAAGTCGATGCTATTTTCAAGAAGAAAGGGTGGAAGCATCTTACG AGGATTGATCGAGTCTATGATTCCAGCAAGGCTGTGAAAGAGCTGGGGTGGATTCCGAGATATACATTTGAAAAA ACGATGGAGAGGCTGGCGCGCGATGAGCAGTGGAGGAGTGACCTAACTGCTAGGGTGGGCAAGAAAGGTTATCAC GCTGTGAGCACTGGGGTGTATACCAAGCGATGA
Gene	>Ani_SJS100_1\|g8542.t1 ATGTCCTCAGAGTATGACGTTCTGGTCACTGGCTCAGCTGGTCATCTGGGTACAGCTTTAATGCTTTGCCTACCT TCGATGGGCTACAACCCTTTCGGCATCGACATTCTCTCCTCTCCGACGACGACAGCCGTGGGCTCTGTCTGCGAT CGCACTTTCATTGCATCTATTTTCCGCAACAACCCCATTAAGCATGTCCTCCATACGGCAACATTGCATAAGCCG CACATATGCAGCCATACTAAGGAGGAGTTCATCTCAACCAACATTGCGGGCACTCTGATCCTTCTTGAAGAATCC TCCAAGTTCAAGGATAGGATCGAGAGCTTCATCTTTTTCAGTACAACCAGCGCCTTTGGTAAGGCCTTAAACCCG AAGCCCGGCTTCCCTGCCGCTTGGATCGATGAGTCTGTCGTACCCGAGCCAAAGAATATCTATGGCGTGACGAAA GTTGCAGCCGAGGATATGTGCGCGCTGGTACAAAAGGAAAGCGGAATGCCTGTCCTAGTTCTTCGAACAAGTCGC TTTTTCCCAGAGGAAGACGATGATGAAGACCGTCGTACGGCGATGAGCGATGAAAATTTGAAGGTCCTGGAATTA GCCTACCGCAGATGCGACATTGAAGATATTGTCAGCGCGTCGGTTTGCTCAATGAGAAAGGCCAAGGATATCCGG TGGGGAAAGTATATTATAAGCGCTCCGCCCCCTTTCAGCAACGACGGAAGCACACTCGATGCTTTAGATCGGAAT CCCGCTGGGGTGATTGCCAAAGCTTTTCCGGAAGTCGATGCTATTTTCAAGAAGAAAGGGTGGAAGCATCTTACG AGGATTGATCGAGTCTATGATTCCAGCAAGGCTGTGAAAGAGCTGGGGTGGATTCCGAGATATACATTTGAAAAA ACGATGGAGAGGCTGGCGCGCGATGAGCAGTGGAGGAGTGACCTAACTGCTAGGGTGGGCAAGAAAGGTTATCAC GCTGTGAGCACTGGGGTGTATACCAAGCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail