© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g8477.t1 |
| Gene name | |
| Location | scaffold_067:97546..100614 |
| Strand | - |
| Gene length (bp) | 3068 |
| Transcript length (bp) | 3012 |
| Coding sequence length (bp) | 3012 |
| Protein length (aa) | 1004 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13361 | UvrD_C | UvrD-like helicase C-terminal domain | 6.7E-61 | 275 | 643 |
| PF00580 | UvrD-helicase | UvrD/REP helicase N-terminal domain | 3.6E-61 | 8 | 267 |
| PF13245 | AAA_19 | AAA domain | 1.1E-31 | 12 | 254 |
| PF13538 | UvrD_C_2 | UvrD-like helicase C-terminal domain | 2.3E-13 | 587 | 641 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0032553 | ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0003674 | molecular_function | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g8477.t1 MDPILDGLNSAQTAAVASPAPILQVLAPPGSGKTKTLTARVAYLLAHHGYRPQDVICCTFTIKASREMRERLAKL IGDELQKKLILGTFHSICRRYLVTYGYLIGLKKGFGIADSGDSLAIIKRIVKRLQVGIQPNAARARISHQKAHGV SPDELAAKLNKNSKVLEQREFVQVYREYEANLAASNLLDYDDLLVRCVELLRKHPQCVSNVQAVLVDEFQDTNHI QYELMNLFASQNQRITVVGDPDQSIYGFRSAEIKNLGRMQQLYKDTSIVLLEDNYRSSGCILSSAQDVIEQDSSR PAKKLQPTHSLGTMPVLRKLPNSESEALWIVLEIKRCIALTGKLVNYSDFAILLRSAALSRQIEAQMGKHGIPYR MVGGLRFFDRVEIKLLLDYLRVISQPGNTDALLRIINVPSRKLGDESVNLLTKGAEKAKKPLWDFIKDVAQGRSS TEKSLSKPADNGLCTLVGLIESARQKLRECTDGSSPRKLLDFLIKKLSFREYLKALHGSNEENRWANVEELLTQA DDTPGPENEAENDENLPEIQGLEQQQAHPGEEALSRFLANVALSTEVLPQEGEEGEQSDEKVTISTIHAAKGLEW PVVFVPAVLNGIIPHSRAEDSDEERRLLYVAMTRAQALLYLSYPLRQSRDGEEATLSSFLPSKLVEERFRFLGPK INDKIIQEIADILRRPMPGSAAISEGRSTCDIPYDDQWTEDGFEAPDAIIRWDGTRAMGGEPNPKRQRLNQEQSG ASTTTYMSWTPPTMNGSNFSVPTTLSLGFSTAREYIATSDSAAEQPPTTKAETKSNAVAASIIGRKVDGLSQKTI SGFFGQPSSSGPKSGSGAAGRYQPQGNRRDAVGQTRHSGSSNSEFKSVIPSNLRTYRPQGPKLQSPRPVLEPSDP NQYTWLAASSKPSEGQKLFSRATQGPKLTDEGTSEAGKDLRTSEIKSLSGTVGGARPVATYHTTTMSMVQTGPAT TMRRTLGIRRSMNGWADRMKRENNGPSS* |
| Coding | >Ani_SJS100_1|g8477.t1 ATGGATCCTATCCTAGATGGGCTCAATTCCGCACAGACAGCCGCCGTAGCGTCTCCGGCCCCCATCCTCCAGGTC CTCGCTCCACCCGGCTCAGGAAAGACCAAGACCCTGACCGCACGCGTCGCGTACCTGCTCGCGCACCATGGCTAC CGACCACAAGATGTCATCTGCTGCACATTTACAATCAAAGCTAGTCGGGAGATGAGGGAACGGCTGGCAAAGCTG ATCGGCGATGAGTTACAGAAGAAGCTGATTCTGGGAACGTTCCATTCGATATGTCGGAGATACCTGGTAACGTAT GGGTATTTGATCGGGTTGAAGAAAGGGTTTGGTATTGCGGATTCGGGGGATAGTTTGGCGATTATCAAAAGGATC GTCAAGCGATTACAGGTTGGAATCCAGCCTAATGCAGCGAGGGCAAGGATATCACACCAGAAAGCTCATGGAGTT AGCCCGGATGAGCTGGCAGCGAAATTGAACAAAAATTCAAAGGTTCTGGAGCAGAGAGAGTTTGTTCAGGTATAT CGTGAGTATGAGGCAAATTTGGCAGCATCAAATTTGCTGGACTACGATGATCTACTTGTACGCTGCGTGGAACTG CTCAGGAAGCATCCGCAGTGTGTATCGAACGTTCAAGCTGTTCTGGTTGATGAGTTCCAAGATACGAACCATATC CAGTATGAGTTGATGAATTTGTTTGCGTCCCAGAATCAGCGGATCACTGTCGTTGGGGATCCGGATCAGAGTATC TACGGTTTCCGATCTGCGGAGATCAAGAATCTGGGGCGTATGCAGCAACTATATAAGGATACGTCGATTGTCTTG CTGGAGGACAATTACCGTTCGTCAGGGTGTATTCTGAGCTCGGCTCAAGATGTCATCGAACAAGATTCATCACGG CCGGCAAAGAAGCTGCAGCCGACGCACAGCTTGGGCACTATGCCTGTCCTGCGCAAGCTGCCTAACTCGGAGTCG GAGGCCCTCTGGATTGTTCTGGAGATCAAGAGGTGCATTGCATTGACTGGGAAGCTTGTGAACTATTCAGACTTT GCGATACTGCTTAGGTCGGCCGCTCTCTCTCGTCAAATCGAAGCCCAGATGGGAAAACATGGAATTCCGTACCGG ATGGTTGGTGGGCTGAGGTTCTTCGACCGAGTGGAAATCAAGTTGCTCCTGGACTATCTTCGAGTGATTAGCCAG CCGGGTAACACCGATGCTCTCTTGCGCATCATAAATGTGCCGTCTAGAAAGCTCGGTGATGAATCGGTCAATCTG TTGACAAAGGGTGCGGAGAAGGCGAAGAAGCCGCTCTGGGACTTCATCAAGGATGTCGCGCAAGGCCGCAGTTCA ACAGAGAAGTCTCTATCAAAGCCTGCCGATAATGGACTGTGTACCTTGGTTGGTCTCATCGAATCTGCTCGACAA AAACTCCGTGAATGCACCGACGGGTCGTCACCGAGGAAGCTCCTCGACTTCTTGATCAAGAAACTTTCGTTCCGT GAATACCTCAAGGCGTTACATGGCTCGAATGAGGAGAATCGGTGGGCCAACGTGGAGGAGCTCTTAACCCAAGCT GATGACACCCCTGGACCAGAGAATGAGGCTGAAAATGATGAAAATCTCCCGGAAATTCAGGGTCTCGAACAACAA CAAGCCCATCCAGGTGAAGAGGCACTGTCTCGCTTTCTGGCGAACGTGGCACTGTCCACAGAGGTTCTTCCCCAG GAAGGTGAAGAGGGCGAGCAATCCGATGAGAAGGTTACTATTTCCACGATTCATGCAGCAAAAGGCCTTGAATGG CCTGTGGTATTTGTTCCGGCCGTGCTCAACGGCATCATCCCACATTCACGGGCCGAGGACTCAGACGAGGAGAGA AGACTGCTTTATGTAGCCATGACCAGGGCGCAGGCATTGCTATATCTGAGCTATCCTCTTCGACAGTCCCGCGAT GGTGAAGAGGCAACCTTGTCGAGTTTCCTCCCGTCAAAGCTAGTAGAGGAGCGATTTCGTTTTCTGGGACCCAAA ATCAACGACAAGATCATACAAGAAATCGCAGATATCCTACGTCGACCAATGCCGGGCTCAGCTGCTATATCGGAA GGACGATCTACCTGTGATATCCCATATGATGATCAGTGGACAGAAGATGGCTTCGAGGCACCTGATGCGATCATT CGCTGGGACGGCACCAGAGCCATGGGCGGGGAGCCCAATCCTAAGAGACAACGGCTCAACCAAGAGCAATCGGGC GCATCGACGACAACGTACATGTCATGGACGCCGCCGACCATGAATGGCTCCAACTTTTCTGTGCCCACCACGTTA TCCCTAGGATTCTCGACAGCCCGCGAATACATAGCGACTAGCGACTCGGCCGCAGAACAACCCCCAACCACGAAA GCCGAGACCAAATCGAACGCCGTAGCTGCCAGCATCATCGGTCGCAAAGTGGATGGGCTATCGCAGAAAACGATA TCCGGCTTCTTCGGGCAGCCTTCGTCGTCAGGCCCAAAGAGCGGTTCAGGCGCGGCTGGGCGCTACCAGCCTCAG GGCAACCGAAGAGATGCCGTAGGGCAAACGCGTCACAGCGGATCGTCGAACTCTGAGTTTAAAAGTGTGATCCCA TCGAATCTCCGGACGTATCGACCGCAAGGGCCAAAGTTGCAATCGCCTCGACCGGTTCTCGAACCTTCCGACCCG AATCAATACACCTGGTTGGCGGCATCCTCGAAGCCCTCGGAGGGACAGAAGCTGTTCTCGCGCGCCACTCAGGGA CCGAAATTGACAGACGAAGGAACAAGCGAAGCTGGGAAGGATTTGCGGACAAGCGAGATTAAGAGTCTTTCAGGA ACCGTCGGGGGAGCCAGACCGGTGGCCACGTATCACACGACAACCATGTCGATGGTGCAGACAGGGCCCGCGACG ACGATGCGACGGACGCTAGGGATTCGACGAAGCATGAATGGATGGGCGGATCGCATGAAGAGGGAGAACAATGGA CCATCCTCATAG |
| Transcript | >Ani_SJS100_1|g8477.t1 ATGGATCCTATCCTAGATGGGCTCAATTCCGCACAGACAGCCGCCGTAGCGTCTCCGGCCCCCATCCTCCAGGTC CTCGCTCCACCCGGCTCAGGAAAGACCAAGACCCTGACCGCACGCGTCGCGTACCTGCTCGCGCACCATGGCTAC CGACCACAAGATGTCATCTGCTGCACATTTACAATCAAAGCTAGTCGGGAGATGAGGGAACGGCTGGCAAAGCTG ATCGGCGATGAGTTACAGAAGAAGCTGATTCTGGGAACGTTCCATTCGATATGTCGGAGATACCTGGTAACGTAT GGGTATTTGATCGGGTTGAAGAAAGGGTTTGGTATTGCGGATTCGGGGGATAGTTTGGCGATTATCAAAAGGATC GTCAAGCGATTACAGGTTGGAATCCAGCCTAATGCAGCGAGGGCAAGGATATCACACCAGAAAGCTCATGGAGTT AGCCCGGATGAGCTGGCAGCGAAATTGAACAAAAATTCAAAGGTTCTGGAGCAGAGAGAGTTTGTTCAGGTATAT CGTGAGTATGAGGCAAATTTGGCAGCATCAAATTTGCTGGACTACGATGATCTACTTGTACGCTGCGTGGAACTG CTCAGGAAGCATCCGCAGTGTGTATCGAACGTTCAAGCTGTTCTGGTTGATGAGTTCCAAGATACGAACCATATC CAGTATGAGTTGATGAATTTGTTTGCGTCCCAGAATCAGCGGATCACTGTCGTTGGGGATCCGGATCAGAGTATC TACGGTTTCCGATCTGCGGAGATCAAGAATCTGGGGCGTATGCAGCAACTATATAAGGATACGTCGATTGTCTTG CTGGAGGACAATTACCGTTCGTCAGGGTGTATTCTGAGCTCGGCTCAAGATGTCATCGAACAAGATTCATCACGG CCGGCAAAGAAGCTGCAGCCGACGCACAGCTTGGGCACTATGCCTGTCCTGCGCAAGCTGCCTAACTCGGAGTCG GAGGCCCTCTGGATTGTTCTGGAGATCAAGAGGTGCATTGCATTGACTGGGAAGCTTGTGAACTATTCAGACTTT GCGATACTGCTTAGGTCGGCCGCTCTCTCTCGTCAAATCGAAGCCCAGATGGGAAAACATGGAATTCCGTACCGG ATGGTTGGTGGGCTGAGGTTCTTCGACCGAGTGGAAATCAAGTTGCTCCTGGACTATCTTCGAGTGATTAGCCAG CCGGGTAACACCGATGCTCTCTTGCGCATCATAAATGTGCCGTCTAGAAAGCTCGGTGATGAATCGGTCAATCTG TTGACAAAGGGTGCGGAGAAGGCGAAGAAGCCGCTCTGGGACTTCATCAAGGATGTCGCGCAAGGCCGCAGTTCA ACAGAGAAGTCTCTATCAAAGCCTGCCGATAATGGACTGTGTACCTTGGTTGGTCTCATCGAATCTGCTCGACAA AAACTCCGTGAATGCACCGACGGGTCGTCACCGAGGAAGCTCCTCGACTTCTTGATCAAGAAACTTTCGTTCCGT GAATACCTCAAGGCGTTACATGGCTCGAATGAGGAGAATCGGTGGGCCAACGTGGAGGAGCTCTTAACCCAAGCT GATGACACCCCTGGACCAGAGAATGAGGCTGAAAATGATGAAAATCTCCCGGAAATTCAGGGTCTCGAACAACAA CAAGCCCATCCAGGTGAAGAGGCACTGTCTCGCTTTCTGGCGAACGTGGCACTGTCCACAGAGGTTCTTCCCCAG GAAGGTGAAGAGGGCGAGCAATCCGATGAGAAGGTTACTATTTCCACGATTCATGCAGCAAAAGGCCTTGAATGG CCTGTGGTATTTGTTCCGGCCGTGCTCAACGGCATCATCCCACATTCACGGGCCGAGGACTCAGACGAGGAGAGA AGACTGCTTTATGTAGCCATGACCAGGGCGCAGGCATTGCTATATCTGAGCTATCCTCTTCGACAGTCCCGCGAT GGTGAAGAGGCAACCTTGTCGAGTTTCCTCCCGTCAAAGCTAGTAGAGGAGCGATTTCGTTTTCTGGGACCCAAA ATCAACGACAAGATCATACAAGAAATCGCAGATATCCTACGTCGACCAATGCCGGGCTCAGCTGCTATATCGGAA GGACGATCTACCTGTGATATCCCATATGATGATCAGTGGACAGAAGATGGCTTCGAGGCACCTGATGCGATCATT CGCTGGGACGGCACCAGAGCCATGGGCGGGGAGCCCAATCCTAAGAGACAACGGCTCAACCAAGAGCAATCGGGC GCATCGACGACAACGTACATGTCATGGACGCCGCCGACCATGAATGGCTCCAACTTTTCTGTGCCCACCACGTTA TCCCTAGGATTCTCGACAGCCCGCGAATACATAGCGACTAGCGACTCGGCCGCAGAACAACCCCCAACCACGAAA GCCGAGACCAAATCGAACGCCGTAGCTGCCAGCATCATCGGTCGCAAAGTGGATGGGCTATCGCAGAAAACGATA TCCGGCTTCTTCGGGCAGCCTTCGTCGTCAGGCCCAAAGAGCGGTTCAGGCGCGGCTGGGCGCTACCAGCCTCAG GGCAACCGAAGAGATGCCGTAGGGCAAACGCGTCACAGCGGATCGTCGAACTCTGAGTTTAAAAGTGTGATCCCA TCGAATCTCCGGACGTATCGACCGCAAGGGCCAAAGTTGCAATCGCCTCGACCGGTTCTCGAACCTTCCGACCCG AATCAATACACCTGGTTGGCGGCATCCTCGAAGCCCTCGGAGGGACAGAAGCTGTTCTCGCGCGCCACTCAGGGA CCGAAATTGACAGACGAAGGAACAAGCGAAGCTGGGAAGGATTTGCGGACAAGCGAGATTAAGAGTCTTTCAGGA ACCGTCGGGGGAGCCAGACCGGTGGCCACGTATCACACGACAACCATGTCGATGGTGCAGACAGGGCCCGCGACG ACGATGCGACGGACGCTAGGGATTCGACGAAGCATGAATGGATGGGCGGATCGCATGAAGAGGGAGAACAATGGA CCATCCTCATAG |
| Gene | >Ani_SJS100_1|g8477.t1 ATGGATCCTATCCTAGATGGGCTCAATTCCGCACAGACAGCCGCCGTAGCGTCTCCGGCCCCCATCCTCCAGGTC CTCGCTCCACCCGGCTCAGGAAAGACCAAGACCCTGACCGCACGCGTCGCGTACCTGCTCGCGCACCATGGCTAC CGACCACAAGATGTCATCTGCTGCACATTTACAATCAAAGCTAGTCGGGAGATGAGGGAACGGCTGGCAAAGCTG ATCGGCGATGAGTTACAGAAGAAGCTGATTCTGGGAACGTTCCATTCGATATGTCGGAGATACCTGGTAACGTAT GGGTATTTGATCGGGTTGAAGAAAGGGTTTGGTATTGCGGATTCGGGGGATAGTTTGGCGATTATCAAAGTATGT GGTCTGGGTTACATGGTCGTGGTGCCTGTGTCGGTTACTGACTTCTACAGAGGATCGTCAAGCGATTACAGGTTG GAATCCAGCCTAATGCAGCGAGGGCAAGGATATCACACCAGAAAGCTCATGGAGTTAGCCCGGATGAGCTGGCAG CGAAATTGAACAAAAATTCAAAGGTTCTGGAGCAGAGAGAGTTTGTTCAGGTATATCGTGAGTATGAGGCAAATT TGGCAGCATCAAATTTGCTGGACTACGATGATCTACTTGTACGCTGCGTGGAACTGCTCAGGAAGCATCCGCAGT GTGTATCGAACGTTCAAGCTGTTCTGGTTGATGAGTTCCAAGATACGAACCATATCCAGTATGAGTTGATGAATT TGTTTGCGTCCCAGAATCAGCGGATCACTGTCGTTGGGGATCCGGATCAGAGTATCTACGGTTTCCGATCTGCGG AGATCAAGAATCTGGGGCGTATGCAGCAACTATATAAGGATACGTCGATTGTCTTGCTGGAGGACAATTACCGTT CGTCAGGGTGTATTCTGAGCTCGGCTCAAGATGTCATCGAACAAGATTCATCACGGCCGGCAAAGAAGCTGCAGC CGACGCACAGCTTGGGCACTATGCCTGTCCTGCGCAAGCTGCCTAACTCGGAGTCGGAGGCCCTCTGGATTGTTC TGGAGATCAAGAGGTGCATTGCATTGACTGGGAAGCTTGTGAACTATTCAGACTTTGCGATACTGCTTAGGTCGG CCGCTCTCTCTCGTCAAATCGAAGCCCAGATGGGAAAACATGGAATTCCGTACCGGATGGTTGGTGGGCTGAGGT TCTTCGACCGAGTGGAAATCAAGTTGCTCCTGGACTATCTTCGAGTGATTAGCCAGCCGGGTAACACCGATGCTC TCTTGCGCATCATAAATGTGCCGTCTAGAAAGCTCGGTGATGAATCGGTCAATCTGTTGACAAAGGGTGCGGAGA AGGCGAAGAAGCCGCTCTGGGACTTCATCAAGGATGTCGCGCAAGGCCGCAGTTCAACAGAGAAGTCTCTATCAA AGCCTGCCGATAATGGACTGTGTACCTTGGTTGGTCTCATCGAATCTGCTCGACAAAAACTCCGTGAATGCACCG ACGGGTCGTCACCGAGGAAGCTCCTCGACTTCTTGATCAAGAAACTTTCGTTCCGTGAATACCTCAAGGCGTTAC ATGGCTCGAATGAGGAGAATCGGTGGGCCAACGTGGAGGAGCTCTTAACCCAAGCTGATGACACCCCTGGACCAG AGAATGAGGCTGAAAATGATGAAAATCTCCCGGAAATTCAGGGTCTCGAACAACAACAAGCCCATCCAGGTGAAG AGGCACTGTCTCGCTTTCTGGCGAACGTGGCACTGTCCACAGAGGTTCTTCCCCAGGAAGGTGAAGAGGGCGAGC AATCCGATGAGAAGGTTACTATTTCCACGATTCATGCAGCAAAAGGCCTTGAATGGCCTGTGGTATTTGTTCCGG CCGTGCTCAACGGCATCATCCCACATTCACGGGCCGAGGACTCAGACGAGGAGAGAAGACTGCTTTATGTAGCCA TGACCAGGGCGCAGGCATTGCTATATCTGAGCTATCCTCTTCGACAGTCCCGCGATGGTGAAGAGGCAACCTTGT CGAGTTTCCTCCCGTCAAAGCTAGTAGAGGAGCGATTTCGTTTTCTGGGACCCAAAATCAACGACAAGATCATAC AAGAAATCGCAGATATCCTACGTCGACCAATGCCGGGCTCAGCTGCTATATCGGAAGGACGATCTACCTGTGATA TCCCATATGATGATCAGTGGACAGAAGATGGCTTCGAGGCACCTGATGCGATCATTCGCTGGGACGGCACCAGAG CCATGGGCGGGGAGCCCAATCCTAAGAGACAACGGCTCAACCAAGAGCAATCGGGCGCATCGACGACAACGTACA TGTCATGGACGCCGCCGACCATGAATGGCTCCAACTTTTCTGTGCCCACCACGTTATCCCTAGGATTCTCGACAG CCCGCGAATACATAGCGACTAGCGACTCGGCCGCAGAACAACCCCCAACCACGAAAGCCGAGACCAAATCGAACG CCGTAGCTGCCAGCATCATCGGTCGCAAAGTGGATGGGCTATCGCAGAAAACGATATCCGGCTTCTTCGGGCAGC CTTCGTCGTCAGGCCCAAAGAGCGGTTCAGGCGCGGCTGGGCGCTACCAGCCTCAGGGCAACCGAAGAGATGCCG TAGGGCAAACGCGTCACAGCGGATCGTCGAACTCTGAGTTTAAAAGTGTGATCCCATCGAATCTCCGGACGTATC GACCGCAAGGGCCAAAGTTGCAATCGCCTCGACCGGTTCTCGAACCTTCCGACCCGAATCAATACACCTGGTTGG CGGCATCCTCGAAGCCCTCGGAGGGACAGAAGCTGTTCTCGCGCGCCACTCAGGGACCGAAATTGACAGACGAAG GAACAAGCGAAGCTGGGAAGGATTTGCGGACAAGCGAGATTAAGAGTCTTTCAGGAACCGTCGGGGGAGCCAGAC CGGTGGCCACGTATCACACGACAACCATGTCGATGGTGCAGACAGGGCCCGCGACGACGATGCGACGGACGCTAG GGATTCGACGAAGCATGAATGGATGGGCGGATCGCATGAAGAGGGAGAACAATGGACCATCCTCATAG |