© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g8466.t1 |
| Gene name | |
| Location | scaffold_067:44298..45307 |
| Strand | - |
| Gene length (bp) | 1009 |
| Transcript length (bp) | 945 |
| Coding sequence length (bp) | 945 |
| Protein length (aa) | 315 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01040 | UbiA | UbiA prenyltransferase family | 3.2E-45 | 40 | 288 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 61 | 83 | 22 |
| 2 | 114 | 136 | 22 |
| 3 | 156 | 178 | 22 |
| 4 | 185 | 207 | 22 |
| 5 | 230 | 252 | 22 |
| 6 | 254 | 276 | 22 |
| Orthofinder run ID | 3 |
| Orthogroup | 8626 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g8466.t1 MDVAGKLIPETDMLDDYTHKRFRAIWEMGRLHTREAWLSVIPAVWGASIGAKAGWTDGWSFAWVLFGIWASATVS HAAFCTWNDICDVEYDRQVERCKGRPLPSGLISVKEATFFFLCWILLTLGTTWYTLGPQATLCTTPAWLLGLIYP FMKRVMPFPQLVVGLSVASGVMPGYVSVRGILEFNGSVLALFGATACWIIFLDTAYAVQDMLDDAKCGVQSLAVF LGKRVRMFLALAAVITIAFFSTAALLSNLSLFTWIFGVGVWAASMIRSIFLLDLNVCASGGRVFKSNIESGFYLT VVTLVEGYLQACFS* |
| Coding | >Ani_SJS100_1|g8466.t1 ATGGATGTCGCAGGAAAACTGATACCAGAGACCGATATGTTGGATGACTACACACACAAGCGCTTCCGCGCCATC TGGGAGATGGGTCGCCTCCATACTCGCGAAGCCTGGCTGTCTGTAATCCCAGCTGTGTGGGGAGCGAGTATCGGT GCAAAGGCAGGCTGGACGGATGGATGGTCATTTGCCTGGGTTCTGTTTGGCATCTGGGCAAGTGCAACGGTCTCC CATGCCGCATTTTGTACATGGAATGACATCTGTGATGTCGAATATGACAGACAAGTTGAACGATGCAAAGGCAGG CCGCTACCATCCGGGCTCATCTCCGTCAAAGAGGCCACTTTCTTCTTTCTCTGTTGGATACTTCTCACCCTGGGG ACTACCTGGTATACACTAGGACCACAGGCGACTCTGTGTACCACACCTGCGTGGCTACTGGGCTTGATCTATCCC TTTATGAAGCGGGTCATGCCCTTCCCTCAGCTCGTGGTGGGTCTCTCTGTTGCCAGTGGTGTTATGCCGGGGTAT GTCTCTGTTCGGGGGATTCTCGAGTTCAACGGGTCGGTTCTAGCTCTGTTTGGGGCAACCGCCTGCTGGATTATC TTTCTTGACACCGCCTACGCCGTTCAAGATATGCTCGACGATGCGAAATGCGGAGTCCAGTCGCTTGCGGTGTTC CTGGGAAAGCGTGTTCGGATGTTCCTTGCCCTAGCTGCTGTCATTACTATTGCATTCTTCTCTACGGCTGCTTTA CTGAGCAATCTCTCTCTATTTACCTGGATCTTCGGTGTTGGGGTATGGGCAGCCAGCATGATACGGAGCATATTT CTATTGGATCTCAATGTCTGCGCGTCTGGGGGACGTGTGTTCAAGTCTAACATTGAATCCGGCTTTTATCTTACG GTAGTTACACTTGTGGAAGGGTATCTTCAAGCGTGCTTTTCTTGA |
| Transcript | >Ani_SJS100_1|g8466.t1 ATGGATGTCGCAGGAAAACTGATACCAGAGACCGATATGTTGGATGACTACACACACAAGCGCTTCCGCGCCATC TGGGAGATGGGTCGCCTCCATACTCGCGAAGCCTGGCTGTCTGTAATCCCAGCTGTGTGGGGAGCGAGTATCGGT GCAAAGGCAGGCTGGACGGATGGATGGTCATTTGCCTGGGTTCTGTTTGGCATCTGGGCAAGTGCAACGGTCTCC CATGCCGCATTTTGTACATGGAATGACATCTGTGATGTCGAATATGACAGACAAGTTGAACGATGCAAAGGCAGG CCGCTACCATCCGGGCTCATCTCCGTCAAAGAGGCCACTTTCTTCTTTCTCTGTTGGATACTTCTCACCCTGGGG ACTACCTGGTATACACTAGGACCACAGGCGACTCTGTGTACCACACCTGCGTGGCTACTGGGCTTGATCTATCCC TTTATGAAGCGGGTCATGCCCTTCCCTCAGCTCGTGGTGGGTCTCTCTGTTGCCAGTGGTGTTATGCCGGGGTAT GTCTCTGTTCGGGGGATTCTCGAGTTCAACGGGTCGGTTCTAGCTCTGTTTGGGGCAACCGCCTGCTGGATTATC TTTCTTGACACCGCCTACGCCGTTCAAGATATGCTCGACGATGCGAAATGCGGAGTCCAGTCGCTTGCGGTGTTC CTGGGAAAGCGTGTTCGGATGTTCCTTGCCCTAGCTGCTGTCATTACTATTGCATTCTTCTCTACGGCTGCTTTA CTGAGCAATCTCTCTCTATTTACCTGGATCTTCGGTGTTGGGGTATGGGCAGCCAGCATGATACGGAGCATATTT CTATTGGATCTCAATGTCTGCGCGTCTGGGGGACGTGTGTTCAAGTCTAACATTGAATCCGGCTTTTATCTTACG GTAGTTACACTTGTGGAAGGGTATCTTCAAGCGTGCTTTTCTTGA |
| Gene | >Ani_SJS100_1|g8466.t1 ATGGATGTCGCAGGAAAACTGATACCAGAGACCGATATGTTGGATGACTACACACACAAGCGCTTCCGCGCCATC TGGGAGATGGGTCGCCTCCATACTCGCGAAGCCTGGCTGTCTGTAATCCCAGCTGTGTGGGGAGCGAGTATCGGT GCAAAGGCAGGCTGGACGGATGGATGGTCATTTGCCTGGGTTCTGTTTGGCATCTGGGCAAGTGCAACGGTCTCC CATGCCGCATTTTGTACATGGAAGTGAGCATAGCATACCCCTCCCCCGAATTGTTCTATGTAAATAGCTACTAAC CAATGCGACCAGTGACATCTGTGATGTCGAATATGACAGACAAGTTGAACGATGCAAAGGCAGGCCGCTACCATC CGGGCTCATCTCCGTCAAAGAGGCCACTTTCTTCTTTCTCTGTTGGATACTTCTCACCCTGGGGACTACCTGGTA TACACTAGGACCACAGGCGACTCTGTGTACCACACCTGCGTGGCTACTGGGCTTGATCTATCCCTTTATGAAGCG GGTCATGCCCTTCCCTCAGCTCGTGGTGGGTCTCTCTGTTGCCAGTGGTGTTATGCCGGGGTATGTCTCTGTTCG GGGGATTCTCGAGTTCAACGGGTCGGTTCTAGCTCTGTTTGGGGCAACCGCCTGCTGGATTATCTTTCTTGACAC CGCCTACGCCGTTCAAGATATGCTCGACGATGCGAAATGCGGAGTCCAGTCGCTTGCGGTGTTCCTGGGAAAGCG TGTTCGGATGTTCCTTGCCCTAGCTGCTGTCATTACTATTGCATTCTTCTCTACGGCTGCTTTACTGAGCAATCT CTCTCTATTTACCTGGATCTTCGGTGTTGGGGTATGGGCAGCCAGCATGATACGGAGCATATTTCTATTGGATCT CAATGTCTGCGCGTCTGGGGGACGTGTGTTCAAGTCTAACATTGAATCCGGCTTTTATCTTACGGTAGTTACACT TGTGGAAGGGTATCTTCAAGCGTGCTTTTCTTGA |