© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g845.t1 |
| Gene name | |
| Location | scaffold_003:95824..97166 |
| Strand | - |
| Gene length (bp) | 1342 |
| Transcript length (bp) | 1197 |
| Coding sequence length (bp) | 1197 |
| Protein length (aa) | 399 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00487 | FA_desaturase | Fatty acid desaturase | 4.1E-29 | 81 | 355 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 72 | 22 |
| 2 | 79 | 101 | 22 |
| 3 | 116 | 133 | 17 |
| 4 | 236 | 255 | 19 |
| 5 | 259 | 281 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g845.t1 MAELRKVPASQAAQQQQQPIHNDDNVPSLKTLKDAIPEECFDSSVVTSLLYLARDILYCAILTYGAFHIHLLPSL PLRALAWAVYGFFQGCVGTGIWILAHECGHGAFSKHQTFNDIVGWAAHSFLMVPYFSWKITHARHHRYTGHMEKD TVFVPWTDNELAKKKNVRIEQLKHLTEETPIVSFLQLIGHQLFGWQLYLFLNVTAGPKSLPENRPIRGAASHFNP FGDLFTKSQYFSIALTDLGLLIMGSILYYASTQIGAWNVVLLYFVPYLWVHHWLIAITYLQHTHPAVPHYTAESW TYTKGALATIDRSIGFIGRHFFHEIIDYHVVHHLFSRIPFYKAEEATRAIQPLLGVNYHEEKESSFLYSLMTTFR KCIYVSDGKKNGVLHFVLPEEAK* |
| Coding | >Ani_SJS100_1|g845.t1 ATGGCTGAACTTCGTAAGGTGCCTGCCAGCCAGGCGGCGCAGCAGCAGCAGCAGCCCATTCACAATGACGATAAT GTCCCCAGCTTGAAGACCCTCAAGGACGCCATTCCCGAGGAATGCTTCGACTCCTCTGTTGTCACCTCCCTCCTC TACCTCGCCCGCGACATCCTCTACTGCGCCATCCTCACCTACGGCGCCTTCCACATCCACCTCCTCCCCTCTCTG CCGCTGCGCGCCCTCGCCTGGGCTGTCTACGGCTTCTTCCAGGGTTGTGTCGGCACCGGAATATGGATTCTGGCT CATGAATGCGGCCATGGTGCCTTCTCCAAGCATCAGACCTTCAACGACATTGTCGGCTGGGCTGCCCACTCCTTC CTGATGGTCCCCTACTTCTCCTGGAAGATCACCCATGCCCGCCACCACCGCTACACCGGCCACATGGAGAAGGAC ACCGTCTTCGTCCCCTGGACCGACAATGAACTGGCCAAGAAGAAGAACGTCCGCATCGAGCAGCTCAAGCATCTC ACCGAGGAAACCCCCATCGTCTCCTTCCTGCAACTCATCGGCCACCAGCTCTTCGGATGGCAGCTGTACCTCTTC CTGAATGTCACCGCCGGTCCCAAGAGTCTGCCCGAGAATCGTCCGATCCGTGGCGCGGCCAGCCACTTCAATCCC TTCGGCGACCTTTTCACCAAGTCGCAGTATTTCAGCATTGCCTTGACTGATTTGGGTCTGCTTATCATGGGTTCG ATTCTGTACTACGCCTCTACGCAGATTGGTGCATGGAATGTCGTCCTTCTGTACTTTGTTCCCTACCTCTGGGTG CATCACTGGCTGATCGCCATCACCTACTTGCAGCACACCCACCCCGCTGTCCCCCACTACACTGCCGAATCCTGG ACCTACACCAAGGGTGCCCTTGCCACCATTGACCGGAGCATCGGCTTCATCGGCCGCCACTTCTTCCACGAAATC ATCGACTACCATGTCGTTCACCACCTGTTCAGCCGGATTCCCTTCTACAAGGCCGAGGAGGCTACCCGCGCTATT CAGCCGCTGTTGGGGGTTAACTACCACGAGGAGAAGGAGAGCAGCTTCTTGTACTCGCTCATGACCACCTTCCGG AAGTGCATCTACGTTTCGGATGGCAAGAAGAACGGTGTGTTGCATTTTGTCCTTCCCGAGGAGGCAAAGTAG |
| Transcript | >Ani_SJS100_1|g845.t1 ATGGCTGAACTTCGTAAGGTGCCTGCCAGCCAGGCGGCGCAGCAGCAGCAGCAGCCCATTCACAATGACGATAAT GTCCCCAGCTTGAAGACCCTCAAGGACGCCATTCCCGAGGAATGCTTCGACTCCTCTGTTGTCACCTCCCTCCTC TACCTCGCCCGCGACATCCTCTACTGCGCCATCCTCACCTACGGCGCCTTCCACATCCACCTCCTCCCCTCTCTG CCGCTGCGCGCCCTCGCCTGGGCTGTCTACGGCTTCTTCCAGGGTTGTGTCGGCACCGGAATATGGATTCTGGCT CATGAATGCGGCCATGGTGCCTTCTCCAAGCATCAGACCTTCAACGACATTGTCGGCTGGGCTGCCCACTCCTTC CTGATGGTCCCCTACTTCTCCTGGAAGATCACCCATGCCCGCCACCACCGCTACACCGGCCACATGGAGAAGGAC ACCGTCTTCGTCCCCTGGACCGACAATGAACTGGCCAAGAAGAAGAACGTCCGCATCGAGCAGCTCAAGCATCTC ACCGAGGAAACCCCCATCGTCTCCTTCCTGCAACTCATCGGCCACCAGCTCTTCGGATGGCAGCTGTACCTCTTC CTGAATGTCACCGCCGGTCCCAAGAGTCTGCCCGAGAATCGTCCGATCCGTGGCGCGGCCAGCCACTTCAATCCC TTCGGCGACCTTTTCACCAAGTCGCAGTATTTCAGCATTGCCTTGACTGATTTGGGTCTGCTTATCATGGGTTCG ATTCTGTACTACGCCTCTACGCAGATTGGTGCATGGAATGTCGTCCTTCTGTACTTTGTTCCCTACCTCTGGGTG CATCACTGGCTGATCGCCATCACCTACTTGCAGCACACCCACCCCGCTGTCCCCCACTACACTGCCGAATCCTGG ACCTACACCAAGGGTGCCCTTGCCACCATTGACCGGAGCATCGGCTTCATCGGCCGCCACTTCTTCCACGAAATC ATCGACTACCATGTCGTTCACCACCTGTTCAGCCGGATTCCCTTCTACAAGGCCGAGGAGGCTACCCGCGCTATT CAGCCGCTGTTGGGGGTTAACTACCACGAGGAGAAGGAGAGCAGCTTCTTGTACTCGCTCATGACCACCTTCCGG AAGTGCATCTACGTTTCGGATGGCAAGAAGAACGGTGTGTTGCATTTTGTCCTTCCCGAGGAGGCAAAGTAG |
| Gene | >Ani_SJS100_1|g845.t1 ATGGCTGAACTTCGTAAGGTGCCTGCCAGCCAGGCGGCGGTATGTCTATCCCTTTCTTCATCACCTCCCCCCTTT GAAAAGCCCTAATTGGCTAACAGCTCCCTTTTGACTTTGACAGCAGCAGCAGCAGCAGCCCATTCACAATGACGA TAATGTCCCCAGCTTGAAGACCCTCAAGGACGCCATTCCCGAGGAATGCTTCGACTCCTCTGTTGTCACCTCCCT CCTCTACCTCGCCCGCGACATCCTCTACTGCGCCATCCTCACCTACGGCGCCTTCCACATCCACCTCCTCCCCTC TCTGCCGCTGCGCGCCCTCGCCTGGGCTGTCTACGGCTTCTTCCAGGGTTGTGTCGGCACCGGAATATGGATTCT GGCTCATGAATGCGGCCATGGTGCCTTCTCCAAGCATCAGACCTTCAACGACATTGTCGGCTGGGCTGCCCACTC CTTCCTGATGGTCCCCTACTTCTCCTGGAAGATCACCCATGCCCGCCACCACCGCTACACCGGCCACATGGAGAA GGACACCGTCTTCGTCCCCTGGACCGACAATGAACTGGCCAAGAAGAAGAACGTCCGCATCGAGCAGCTCAAGCA TCTCACCGAGGAAACCCCCATCGTCTCCTTCCTGCAACTCATCGGCCACCAGCTCTTCGGATGGCAGCTGTACCT CTTCCTGAATGTCACCGCCGGTCCCAAGAGTCTGCCCGAGAATCGTCCGATCCGTGGCGCGGCCAGCCACTTCAA TCCCTTCGGCGACCTTTTCACCAAGTCGCAGTATTTCAGCATTGCCTTGACTGATTTGGGTCTGCTTATCATGGG TTCGATTCTGTACTACGCCTCTACGCAGATTGGTGCATGGAATGTCGTCCTTCTGTACTTTGTTCCCTACCTCTG GGTGCATCACTGGCTGAGTATGTTTCTTTCCTTTTATTTCTAGAGTTTGTTGAAGAAGAAGGAAGTGCTAACAAA TGAAACAGTCGCCATCACCTACTTGCAGCACACCCACCCCGCTGTCCCCCACTACACTGCCGAATCCTGGACCTA CACCAAGGGTGCCCTTGCCACCATTGACCGGAGCATCGGCTTCATCGGCCGCCACTTCTTCCACGAAATCATCGA CTACCATGTCGTTCACCACCTGTTCAGCCGGATTCCCTTCTACAAGGCCGAGGAGGCTACCCGCGCTATTCAGCC GCTGTTGGGGGTTAACTACCACGAGGAGAAGGAGAGCAGCTTCTTGTACTCGCTCATGACCACCTTCCGGAAGTG CATCTACGTTTCGGATGGCAAGAAGAACGGTGTGTTGCATTTTGTCCTTCCCGAGGAGGCAAAGTAG |