© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g8086.t1 |
| Gene name | |
| Location | scaffold_060:209972..210688 |
| Strand | + |
| Gene length (bp) | 716 |
| Transcript length (bp) | 426 |
| Coding sequence length (bp) | 426 |
| Protein length (aa) | 142 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02046 | COX6A | Cytochrome c oxidase subunit VIa | 2.8E-53 | 25 | 136 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005751 | mitochondrial respiratory chain complex IV | Yes |
| GO:0005743 | mitochondrial inner membrane | Yes |
| GO:0031966 | mitochondrial membrane | No |
| GO:0045277 | respiratory chain complex IV | No |
| GO:0098796 | membrane protein complex | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0031090 | organelle membrane | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0098803 | respiratory chain complex | No |
| GO:0019866 | organelle inner membrane | No |
| GO:0070069 | cytochrome complex | No |
| GO:0005575 | cellular_component | No |
| GO:0016020 | membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g8086.t1 MFPQRNALRLSQRAAQQLRAAPVRSTVQRRLNSSDSKLPSWAVDNEFNREREAVKHHAAATSDLWRKLSIYAVIP VLIAGGINAYNLWTEHWEHWAHMPPLEERTEYPYQNIRVKNFPWGDGDKTIFWNSDVNYHNKDKAT* |
| Coding | >Ani_SJS100_1|g8086.t1 ATGTTCCCTCAGCGCAACGCCCTTCGTCTGTCTCAGCGCGCTGCCCAGCAGCTGCGTGCTGCTCCGGTTCGCTCC ACCGTCCAGCGCCGTCTCAACAGCTCCGACTCCAAGCTTCCCTCTTGGGCCGTCGACAACGAATTCAACCGCGAG AGAGAGGCCGTCAAGCACCACGCTGCTGCTACCAGTGATCTGTGGCGCAAGCTCTCCATCTACGCCGTCATTCCT GTCCTGATTGCCGGAGGTATCAACGCCTACAACCTTTGGACTGAGCACTGGGAACACTGGGCGCACATGCCCCCG CTCGAGGAGCGTACCGAGTACCCCTACCAGAACATCCGTGTGAAGAACTTCCCCTGGGGAGACGGTGACAAGACC ATCTTCTGGAACTCCGACGTCAACTACCACAACAAGGACAAGGCTACCTAA |
| Transcript | >Ani_SJS100_1|g8086.t1 ATGTTCCCTCAGCGCAACGCCCTTCGTCTGTCTCAGCGCGCTGCCCAGCAGCTGCGTGCTGCTCCGGTTCGCTCC ACCGTCCAGCGCCGTCTCAACAGCTCCGACTCCAAGCTTCCCTCTTGGGCCGTCGACAACGAATTCAACCGCGAG AGAGAGGCCGTCAAGCACCACGCTGCTGCTACCAGTGATCTGTGGCGCAAGCTCTCCATCTACGCCGTCATTCCT GTCCTGATTGCCGGAGGTATCAACGCCTACAACCTTTGGACTGAGCACTGGGAACACTGGGCGCACATGCCCCCG CTCGAGGAGCGTACCGAGTACCCCTACCAGAACATCCGTGTGAAGAACTTCCCCTGGGGAGACGGTGACAAGACC ATCTTCTGGAACTCCGACGTCAACTACCACAACAAGGACAAGGCTACCTAA |
| Gene | >Ani_SJS100_1|g8086.t1 ATGTTCCCTCAGCGCAACGCCCTTCGTCTGTCTCAGCGCGCTGCCCAGCAGCTGCGTGCTGCTCCGGTTCGCTCC ACCGTCCAGCGCCGTCTCAACAGCTCCGACTCCAAGCTTCCCTCTTGGGCCGTCGACAACGAATTCAACCGCGAG AGAGAGGCCGTCAAGCACCACGCTGCTGCTACCAGTGGTGCGTATTGAGATCAATTGATGCCGTGATCTTGCAAG GATGTGGTTGTGCTAACTCAATGGCTGTCTTACTGCTCCAGATCTGTGGCGCAAGCTCTCCATCTAGTATGTGGG CTAGCTATTACTACCGCAATTGACTTCTAGTAACATTCTACTTTTTCGCAGCGCCGTCATTCCTGTCCTGATTGC CGGAGGTATCAACGCCTACAACCTTTGGACTGAGCACTGGGAACACTGGGCGCACATGCCCCCGCTCGAGGAGCG TACCGAGTACCCCTACCAGAACATCCGTGTGAAGAACTTCCCCTGGGGAGACGGTGACAAGGTGCGTCCCAGACA TTTTACTCTCATGCAATGCCAATCTGAGTGCTGACGATTTTATTTCTTTCTCCAGACCATCTTGTAAGTTCCTTA CACCCGAAATTTCCAGCGTCGGGCATAACTCGACAGTCAATAATAACGATGCCTTCTAACAAACTCACAGCTGGA ACTCCGACGTCAACTACCACAACAAGGACAAGGCTACCTAA |