© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g7789.t1 |
| Gene name | |
| Location | scaffold_056:222867..223984 |
| Strand | + |
| Gene length (bp) | 1117 |
| Transcript length (bp) | 1017 |
| Coding sequence length (bp) | 1017 |
| Protein length (aa) | 339 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 1.0E-62 | 68 | 302 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 96 | 118 | 22 |
| 4 | 135 | 157 | 22 |
| 5 | 198 | 220 | 22 |
| 6 | 233 | 255 | 22 |
| 7 | 275 | 294 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g7789.t1 MSASGHGSSETQTYGSDTCHAYVDGVSTSYGYVPSLAAASTFVALFGASMLGHAVQMAWFRTWWCSVFSLGCLVE ILGWAARIWSAKCPYAQTPYLMQITTLIIAPTFFTAGIYVLLARFIRIFGPQSSVLSPKLYLWIFCTCDIISLVV QAAGGGMASSGGGGGGGDSSSSTSSLSTRETSSSNSQSTGTHIMVGGIIFQLVAITVFVALGADFAWRVFCREVP SRRGNTHMPIVIGLFSAMVLSVLLIYIRSVYRTIELLHGWTSSTMRNEKLLIGLDGAMMVPAVIVFNLFHPGQLL RKIELRANSVPMVSEQTLVLEDFEEESQGDKLVLLGRG* |
| Coding | >Ani_SJS100_1|g7789.t1 ATGAGTGCTTCAGGCCACGGAAGCTCAGAAACACAGACATACGGCAGCGATACATGCCATGCCTATGTGGATGGC GTGTCAACTTCATACGGCTATGTGCCCTCGCTCGCAGCAGCCTCTACCTTTGTAGCTCTCTTTGGCGCTTCGATG CTAGGCCATGCTGTCCAAATGGCGTGGTTCCGTACCTGGTGGTGTTCCGTGTTCTCACTAGGATGCTTGGTCGAA ATCCTAGGTTGGGCGGCCCGAATATGGTCTGCTAAGTGCCCCTACGCTCAGACACCATATCTCATGCAAATCACT ACCCTCATCATAGCACCAACGTTCTTCACCGCAGGAATTTACGTACTGCTAGCCCGTTTCATTCGCATCTTCGGC CCCCAATCATCTGTCCTTTCTCCTAAGCTCTACCTCTGGATCTTCTGCACCTGCGATATTATCTCTTTGGTTGTC CAGGCAGCAGGAGGAGGTATGGCTTCATCAGGAGGAGGTGGTGGTGGTGGGGACTCGTCCTCCAGCACCAGCTCG TTGAGCACCAGAGAGACCTCCTCCTCCAACTCCCAATCAACCGGAACCCACATCATGGTCGGCGGCATCATCTTC CAGCTCGTGGCTATAACAGTCTTCGTTGCCCTTGGCGCTGATTTTGCCTGGCGCGTATTCTGCCGCGAAGTACCA TCCCGCCGGGGTAACACGCACATGCCGATAGTGATCGGTTTGTTTTCGGCAATGGTGCTTTCGGTCCTCTTGATA TATATTCGGAGTGTATATCGGACGATTGAGTTGCTACATGGGTGGACCAGTTCAACAATGCGAAATGAAAAATTG TTAATTGGGTTGGATGGGGCGATGATGGTTCCGGCTGTTATTGTTTTCAATCTCTTTCATCCGGGGCAGTTATTG CGGAAGATTGAATTGCGGGCGAATTCGGTGCCCATGGTGAGCGAGCAGACATTGGTCTTGGAGGACTTTGAGGAG GAGAGTCAGGGGGATAAGTTGGTTTTGTTGGGAAGGGGCTAG |
| Transcript | >Ani_SJS100_1|g7789.t1 ATGAGTGCTTCAGGCCACGGAAGCTCAGAAACACAGACATACGGCAGCGATACATGCCATGCCTATGTGGATGGC GTGTCAACTTCATACGGCTATGTGCCCTCGCTCGCAGCAGCCTCTACCTTTGTAGCTCTCTTTGGCGCTTCGATG CTAGGCCATGCTGTCCAAATGGCGTGGTTCCGTACCTGGTGGTGTTCCGTGTTCTCACTAGGATGCTTGGTCGAA ATCCTAGGTTGGGCGGCCCGAATATGGTCTGCTAAGTGCCCCTACGCTCAGACACCATATCTCATGCAAATCACT ACCCTCATCATAGCACCAACGTTCTTCACCGCAGGAATTTACGTACTGCTAGCCCGTTTCATTCGCATCTTCGGC CCCCAATCATCTGTCCTTTCTCCTAAGCTCTACCTCTGGATCTTCTGCACCTGCGATATTATCTCTTTGGTTGTC CAGGCAGCAGGAGGAGGTATGGCTTCATCAGGAGGAGGTGGTGGTGGTGGGGACTCGTCCTCCAGCACCAGCTCG TTGAGCACCAGAGAGACCTCCTCCTCCAACTCCCAATCAACCGGAACCCACATCATGGTCGGCGGCATCATCTTC CAGCTCGTGGCTATAACAGTCTTCGTTGCCCTTGGCGCTGATTTTGCCTGGCGCGTATTCTGCCGCGAAGTACCA TCCCGCCGGGGTAACACGCACATGCCGATAGTGATCGGTTTGTTTTCGGCAATGGTGCTTTCGGTCCTCTTGATA TATATTCGGAGTGTATATCGGACGATTGAGTTGCTACATGGGTGGACCAGTTCAACAATGCGAAATGAAAAATTG TTAATTGGGTTGGATGGGGCGATGATGGTTCCGGCTGTTATTGTTTTCAATCTCTTTCATCCGGGGCAGTTATTG CGGAAGATTGAATTGCGGGCGAATTCGGTGCCCATGGTGAGCGAGCAGACATTGGTCTTGGAGGACTTTGAGGAG GAGAGTCAGGGGGATAAGTTGGTTTTGTTGGGAAGGGGCTAG |
| Gene | >Ani_SJS100_1|g7789.t1 ATGAGTGCTTCAGGCCACGGAAGCTCAGAAACACAGACATACGGCAGCGATACATGCCATGCCTATGTGGATGGC GTGTCAACTTCATACGGCTATGTGCCCTCGCTCGCAGCAGCCTCTACCTTTGTAGCTCTCTTTGGCGCTTCGATG CTAGGCCATGCTGTCCAAATGGCGTGGTTCCGTACCTGGTGGTGTTCCGTGTTCTCACTAGGATGCTTGGGTATC TTGACCACCGCAGAGGCTAGATCGATTATGCTGACTGGAACACAGTCGAAATCCTAGGTTGGGCGGCCCGAATAT GGTCTGCTAAGTGCCCCTACGCTCAGACACCATATCTCATGCAAATCACTACCCTCATCATAGGTGAGATATCCC ATTGCTAGTACAGGGGCACATCTGACGTTCATTGATAGCACCAACGTTCTTCACCGCAGGAATTTACGTACTGCT AGCCCGTTTCATTCGCATCTTCGGCCCCCAATCATCTGTCCTTTCTCCTAAGCTCTACCTCTGGATCTTCTGCAC CTGCGATATTATCTCTTTGGTTGTCCAGGCAGCAGGAGGAGGTATGGCTTCATCAGGAGGAGGTGGTGGTGGTGG GGACTCGTCCTCCAGCACCAGCTCGTTGAGCACCAGAGAGACCTCCTCCTCCAACTCCCAATCAACCGGAACCCA CATCATGGTCGGCGGCATCATCTTCCAGCTCGTGGCTATAACAGTCTTCGTTGCCCTTGGCGCTGATTTTGCCTG GCGCGTATTCTGCCGCGAAGTACCATCCCGCCGGGGTAACACGCACATGCCGATAGTGATCGGTTTGTTTTCGGC AATGGTGCTTTCGGTCCTCTTGATATATATTCGGAGTGTATATCGGACGATTGAGTTGCTACATGGGTGGACCAG TTCAACAATGCGAAATGAAAAATTGTTAATTGGGTTGGATGGGGCGATGATGGTTCCGGCTGTTATTGTTTTCAA TCTCTTTCATCCGGGGCAGTTATTGCGGAAGATTGAATTGCGGGCGAATTCGGTGCCCATGGTGAGCGAGCAGAC ATTGGTCTTGGAGGACTTTGAGGAGGAGAGTCAGGGGGATAAGTTGGTTTTGTTGGGAAGGGGCTAG |