Protein ID | Ani_SJS100_1|g7739.t1 |
Gene name | |
Location | scaffold_056:71261..72289 |
Strand | - |
Gene length (bp) | 1028 |
Transcript length (bp) | 903 |
Coding sequence length (bp) | 903 |
Protein length (aa) | 301 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13639 | zf-RING_2 | Ring finger domain | 3.9E-11 | 246 | 288 |
PF17123 | zf-RING_11 | RING-like zinc finger | 2.7E-09 | 248 | 275 |
PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 9.6E-08 | 248 | 288 |
PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 1.2E-07 | 248 | 287 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046872 | metal ion binding | Yes |
GO:0043169 | cation binding | No |
GO:0005488 | binding | No |
GO:0043167 | ion binding | No |
GO:0003674 | molecular_function | No |
Domain # | Start | End | Length |
---|---|---|---|
1 | 30 | 52 | 22 |
Orthofinder run ID | 3 |
Orthogroup | 7972 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g7739.t1 MSSTTTGSSSSATSTDRNGNNNSSSPTSSPLLFFVALGFGVVFTNLWIIVGVKYCFRYNQRNRQLRSEVTGEPID LVAMPRTHRRRREKKLMTMDDVNERFPLTKYKAWRSSRENEGLSGAGGISAPNSRSQSPKDENYMLSASLGAPSS MVASPLKSHQRVDSNTSQASAPLENLETTLPQSEEKSQRYSEPSPTNIGVNDNANISAPEQPRNHALNHVIVEDV GDLEDHIRTAVPADFLANPGDTCAICLDTIEDEDDIRGLTCGHAFHASCVDPWLTSRRACCPLSQNVKVDGAWHE * |
Coding | >Ani_SJS100_1|g7739.t1 ATGTCCTCAACGACTACAGGCTCCTCTTCAAGTGCCACTAGTACAGATCGTAATGGGAATAACAACAGCTCAAGC CCTACTAGTTCGCCTCTACTATTTTTCGTCGCCCTCGGGTTTGGTGTTGTTTTCACCAATCTATGGATTATCGTG GGGGTAAAATATTGCTTTCGATATAATCAACGCAATCGCCAATTACGCAGTGAAGTGACAGGCGAGCCTATAGAT CTGGTCGCTATGCCACGAACACACCGAAGACGTCGAGAAAAGAAGTTGATGACTATGGACGACGTTAACGAGAGG TTTCCACTGACGAAGTATAAAGCATGGAGGTCATCCCGGGAGAATGAAGGCCTCTCTGGTGCAGGCGGGATCTCG GCACCGAATAGCCGGTCGCAAAGCCCCAAGGATGAGAACTACATGTTGTCCGCTTCGCTTGGCGCTCCTTCATCC ATGGTGGCATCGCCACTCAAAAGCCATCAGCGGGTTGATTCCAACACTTCGCAGGCCTCTGCACCACTAGAAAAC CTGGAGACAACGCTACCACAATCTGAAGAGAAGAGCCAGAGATATTCCGAGCCAAGCCCTACAAACATCGGAGTA AACGACAACGCCAACATATCAGCCCCGGAGCAGCCCCGTAACCACGCGCTCAACCATGTCATCGTAGAGGATGTT GGAGACCTGGAAGACCATATCCGCACCGCTGTACCTGCCGATTTCCTGGCAAATCCAGGGGATACTTGTGCTATA TGTCTCGATACGATCGAGGATGAAGATGATATACGGGGGCTTACATGTGGACATGCTTTTCATGCGTCTTGTGTT GACCCATGGTTGACAAGTCGACGGGCTTGCTGTCCCCTATCTCAGAACGTCAAGGTCGACGGGGCATGGCACGAG TGA |
Transcript | >Ani_SJS100_1|g7739.t1 ATGTCCTCAACGACTACAGGCTCCTCTTCAAGTGCCACTAGTACAGATCGTAATGGGAATAACAACAGCTCAAGC CCTACTAGTTCGCCTCTACTATTTTTCGTCGCCCTCGGGTTTGGTGTTGTTTTCACCAATCTATGGATTATCGTG GGGGTAAAATATTGCTTTCGATATAATCAACGCAATCGCCAATTACGCAGTGAAGTGACAGGCGAGCCTATAGAT CTGGTCGCTATGCCACGAACACACCGAAGACGTCGAGAAAAGAAGTTGATGACTATGGACGACGTTAACGAGAGG TTTCCACTGACGAAGTATAAAGCATGGAGGTCATCCCGGGAGAATGAAGGCCTCTCTGGTGCAGGCGGGATCTCG GCACCGAATAGCCGGTCGCAAAGCCCCAAGGATGAGAACTACATGTTGTCCGCTTCGCTTGGCGCTCCTTCATCC ATGGTGGCATCGCCACTCAAAAGCCATCAGCGGGTTGATTCCAACACTTCGCAGGCCTCTGCACCACTAGAAAAC CTGGAGACAACGCTACCACAATCTGAAGAGAAGAGCCAGAGATATTCCGAGCCAAGCCCTACAAACATCGGAGTA AACGACAACGCCAACATATCAGCCCCGGAGCAGCCCCGTAACCACGCGCTCAACCATGTCATCGTAGAGGATGTT GGAGACCTGGAAGACCATATCCGCACCGCTGTACCTGCCGATTTCCTGGCAAATCCAGGGGATACTTGTGCTATA TGTCTCGATACGATCGAGGATGAAGATGATATACGGGGGCTTACATGTGGACATGCTTTTCATGCGTCTTGTGTT GACCCATGGTTGACAAGTCGACGGGCTTGCTGTCCCCTATCTCAGAACGTCAAGGTCGACGGGGCATGGCACGAG TGA |
Gene | >Ani_SJS100_1|g7739.t1 ATGTCCTCAACGACTACAGGCTCCTCTTCAAGTGCCACTAGTACAGATCGTAATGGGAATAACAACAGCTCAAGC CCTACTAGTTCGCCTCTACTATTTTTCGTCGCCCTCGGGTTTGGTGTTGTTTTCACCAATCTATGGTATGTCCAA ATTGGTATCACTAGGCCTTTGCTGCGCTTAGATGCTCATCTAACCATCGCGTTCCAGGATTATCGTGGGGGTAAA ATATTGCTTTCGATATAATCAACGCAATCGCCAATTACGCAGTGAAGTGACAGGCGAGCCTATAGATCTGGTCGC TATGCCACGAACACACCGAAGACGTCGAGAAAAGAAGTTGATGACTATGGACGACGTTAACGAGAGGTTTCCACT GACGAAGTATAAAGCATGGAGGTCATCCCGGGAGAATGAAGGCCTCTCTGGTGCAGGCGGGATCTCGGCACCGAA TAGCCGGTCGCAAAGCCCCAAGGATGAGAACTACATGTTGTCCGCTTCGCTTGGCGCTCCTTCATCCATGGTGGC ATCGCCACTCAAAAGCCATCAGCGGGTTGATTCCAACACTTCGCAGGCCTCTGCACCACTAGAAAACCTGGAGAC AACGCTACCACAATCTGAAGAGAAGAGCCAGAGATATTCCGAGCCAAGCCCTACAAACATCGGAGTAAACGACAA CGCCAACATATCAGCCCCGGAGCAGCCCCGTAACCACGCGCTCAACCATGTCATCGTAGAGGATGTTGGAGACCT GGAAGACCATATCCGCACCGCTGTACCTGCCGATTTCCTGGCAAATCCAGGGGATACTTGTGCTATATGTCTCGA TACGATCGAGGATGAAGATGATATACGGGGGCTTACATGTGGACATGCTTTTCATGCGTCTTGTGTTGACCCATG GTTGACAAGTCGACGGGCTTGCTGTCCCCTATGTAAGGCAGATTACTACATCCCGAAACCTCGCGCAGAAACTTC TGAATTGGCTCCTAGCTCAGAACGTCAAGGTCGACGGGGCATGGCACGAGTGA |