© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g7739.t1 |
| Gene name | |
| Location | scaffold_056:71261..72289 |
| Strand | - |
| Gene length (bp) | 1028 |
| Transcript length (bp) | 903 |
| Coding sequence length (bp) | 903 |
| Protein length (aa) | 301 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13639 | zf-RING_2 | Ring finger domain | 3.9E-11 | 246 | 288 |
| PF17123 | zf-RING_11 | RING-like zinc finger | 2.7E-09 | 248 | 275 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 9.6E-08 | 248 | 288 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 1.2E-07 | 248 | 287 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g7739.t1 MSSTTTGSSSSATSTDRNGNNNSSSPTSSPLLFFVALGFGVVFTNLWIIVGVKYCFRYNQRNRQLRSEVTGEPID LVAMPRTHRRRREKKLMTMDDVNERFPLTKYKAWRSSRENEGLSGAGGISAPNSRSQSPKDENYMLSASLGAPSS MVASPLKSHQRVDSNTSQASAPLENLETTLPQSEEKSQRYSEPSPTNIGVNDNANISAPEQPRNHALNHVIVEDV GDLEDHIRTAVPADFLANPGDTCAICLDTIEDEDDIRGLTCGHAFHASCVDPWLTSRRACCPLSQNVKVDGAWHE * |
| Coding | >Ani_SJS100_1|g7739.t1 ATGTCCTCAACGACTACAGGCTCCTCTTCAAGTGCCACTAGTACAGATCGTAATGGGAATAACAACAGCTCAAGC CCTACTAGTTCGCCTCTACTATTTTTCGTCGCCCTCGGGTTTGGTGTTGTTTTCACCAATCTATGGATTATCGTG GGGGTAAAATATTGCTTTCGATATAATCAACGCAATCGCCAATTACGCAGTGAAGTGACAGGCGAGCCTATAGAT CTGGTCGCTATGCCACGAACACACCGAAGACGTCGAGAAAAGAAGTTGATGACTATGGACGACGTTAACGAGAGG TTTCCACTGACGAAGTATAAAGCATGGAGGTCATCCCGGGAGAATGAAGGCCTCTCTGGTGCAGGCGGGATCTCG GCACCGAATAGCCGGTCGCAAAGCCCCAAGGATGAGAACTACATGTTGTCCGCTTCGCTTGGCGCTCCTTCATCC ATGGTGGCATCGCCACTCAAAAGCCATCAGCGGGTTGATTCCAACACTTCGCAGGCCTCTGCACCACTAGAAAAC CTGGAGACAACGCTACCACAATCTGAAGAGAAGAGCCAGAGATATTCCGAGCCAAGCCCTACAAACATCGGAGTA AACGACAACGCCAACATATCAGCCCCGGAGCAGCCCCGTAACCACGCGCTCAACCATGTCATCGTAGAGGATGTT GGAGACCTGGAAGACCATATCCGCACCGCTGTACCTGCCGATTTCCTGGCAAATCCAGGGGATACTTGTGCTATA TGTCTCGATACGATCGAGGATGAAGATGATATACGGGGGCTTACATGTGGACATGCTTTTCATGCGTCTTGTGTT GACCCATGGTTGACAAGTCGACGGGCTTGCTGTCCCCTATCTCAGAACGTCAAGGTCGACGGGGCATGGCACGAG TGA |
| Transcript | >Ani_SJS100_1|g7739.t1 ATGTCCTCAACGACTACAGGCTCCTCTTCAAGTGCCACTAGTACAGATCGTAATGGGAATAACAACAGCTCAAGC CCTACTAGTTCGCCTCTACTATTTTTCGTCGCCCTCGGGTTTGGTGTTGTTTTCACCAATCTATGGATTATCGTG GGGGTAAAATATTGCTTTCGATATAATCAACGCAATCGCCAATTACGCAGTGAAGTGACAGGCGAGCCTATAGAT CTGGTCGCTATGCCACGAACACACCGAAGACGTCGAGAAAAGAAGTTGATGACTATGGACGACGTTAACGAGAGG TTTCCACTGACGAAGTATAAAGCATGGAGGTCATCCCGGGAGAATGAAGGCCTCTCTGGTGCAGGCGGGATCTCG GCACCGAATAGCCGGTCGCAAAGCCCCAAGGATGAGAACTACATGTTGTCCGCTTCGCTTGGCGCTCCTTCATCC ATGGTGGCATCGCCACTCAAAAGCCATCAGCGGGTTGATTCCAACACTTCGCAGGCCTCTGCACCACTAGAAAAC CTGGAGACAACGCTACCACAATCTGAAGAGAAGAGCCAGAGATATTCCGAGCCAAGCCCTACAAACATCGGAGTA AACGACAACGCCAACATATCAGCCCCGGAGCAGCCCCGTAACCACGCGCTCAACCATGTCATCGTAGAGGATGTT GGAGACCTGGAAGACCATATCCGCACCGCTGTACCTGCCGATTTCCTGGCAAATCCAGGGGATACTTGTGCTATA TGTCTCGATACGATCGAGGATGAAGATGATATACGGGGGCTTACATGTGGACATGCTTTTCATGCGTCTTGTGTT GACCCATGGTTGACAAGTCGACGGGCTTGCTGTCCCCTATCTCAGAACGTCAAGGTCGACGGGGCATGGCACGAG TGA |
| Gene | >Ani_SJS100_1|g7739.t1 ATGTCCTCAACGACTACAGGCTCCTCTTCAAGTGCCACTAGTACAGATCGTAATGGGAATAACAACAGCTCAAGC CCTACTAGTTCGCCTCTACTATTTTTCGTCGCCCTCGGGTTTGGTGTTGTTTTCACCAATCTATGGTATGTCCAA ATTGGTATCACTAGGCCTTTGCTGCGCTTAGATGCTCATCTAACCATCGCGTTCCAGGATTATCGTGGGGGTAAA ATATTGCTTTCGATATAATCAACGCAATCGCCAATTACGCAGTGAAGTGACAGGCGAGCCTATAGATCTGGTCGC TATGCCACGAACACACCGAAGACGTCGAGAAAAGAAGTTGATGACTATGGACGACGTTAACGAGAGGTTTCCACT GACGAAGTATAAAGCATGGAGGTCATCCCGGGAGAATGAAGGCCTCTCTGGTGCAGGCGGGATCTCGGCACCGAA TAGCCGGTCGCAAAGCCCCAAGGATGAGAACTACATGTTGTCCGCTTCGCTTGGCGCTCCTTCATCCATGGTGGC ATCGCCACTCAAAAGCCATCAGCGGGTTGATTCCAACACTTCGCAGGCCTCTGCACCACTAGAAAACCTGGAGAC AACGCTACCACAATCTGAAGAGAAGAGCCAGAGATATTCCGAGCCAAGCCCTACAAACATCGGAGTAAACGACAA CGCCAACATATCAGCCCCGGAGCAGCCCCGTAACCACGCGCTCAACCATGTCATCGTAGAGGATGTTGGAGACCT GGAAGACCATATCCGCACCGCTGTACCTGCCGATTTCCTGGCAAATCCAGGGGATACTTGTGCTATATGTCTCGA TACGATCGAGGATGAAGATGATATACGGGGGCTTACATGTGGACATGCTTTTCATGCGTCTTGTGTTGACCCATG GTTGACAAGTCGACGGGCTTGCTGTCCCCTATGTAAGGCAGATTACTACATCCCGAAACCTCGCGCAGAAACTTC TGAATTGGCTCCTAGCTCAGAACGTCAAGGTCGACGGGGCATGGCACGAGTGA |