© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g7620.t1 |
| Gene name | |
| Location | scaffold_054:164767..166756 |
| Strand | - |
| Gene length (bp) | 1989 |
| Transcript length (bp) | 1770 |
| Coding sequence length (bp) | 1770 |
| Protein length (aa) | 590 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00955 | HCO3_cotransp | HCO3- transporter family | 3.6E-39 | 31 | 201 |
| PF00955 | HCO3_cotransp | HCO3- transporter family | 9.2E-19 | 201 | 383 |
| PF00955 | HCO3_cotransp | HCO3- transporter family | 9.0E-07 | 420 | 505 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006820 | anion transport | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0006811 | ion transport | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 53 | 75 | 22 |
| 2 | 87 | 109 | 22 |
| 3 | 113 | 135 | 22 |
| 4 | 148 | 170 | 22 |
| 5 | 204 | 226 | 22 |
| 6 | 239 | 258 | 19 |
| 7 | 295 | 312 | 17 |
| 8 | 426 | 448 | 22 |
| 9 | 458 | 480 | 22 |
| 10 | 500 | 522 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g7620.t1 MPGTKYFGGQSPYTYSYDNRTEWRRFRMLNPCRGMYHDVRRRLPHYWSDIRDALTYRTIASTIRIYFINILPAIA YTLDMYRRTGEFYGINEALFSSALAAMVFSVLGAQPLTIVGITGLISLFNYTIYDIIVIYEPAIYANFMCWTAIW AAIFHWIVAVCNLCDYMRYVTDFSSESFGAYVGIIYCIKGVEELVNEFTVYGPTAGFMSCMIAILYFFTIYGLEL VGSSTICRPWLRELLADYAYVIGTIFWVGFAHIPGNLKATGISFVPITRAFYPTQPRGWLIHFWELETKWVFAAL PFGFLVMLLFYYDHNVSSLGAQGRQYPLEKPAGFHWDFFLLGCTTFIAGITGIPMPNGLVPQVQPPTFKHTNSLL TYPPIQAPVHTTSLTVTETTLHIIPISDPESEGTEICRPIITPTAVIEQRISHFLMGLAIIGTMTGPLLIVLHTM PAAVFAGVFFIVGWGSIESNGILHKIIFLLREDRFIPRNEKLLRVPRRKIMLYVMCQVIGVAACVAISQTIAAIG FPILIIGLIPFRVWVVPRWFGVEELGVLDGLTADGEAVLCSLGGPPRFPGEARGVEGERQKGGE* |
| Coding | >Ani_SJS100_1|g7620.t1 ATGCCCGGCACTAAGTACTTCGGTGGGCAGAGTCCATATACCTACTCCTACGACAATCGGACAGAATGGAGACGC TTTCGTATGCTGAATCCATGCAGAGGCATGTATCACGATGTCCGTCGACGACTACCCCACTACTGGAGTGATATT CGAGATGCGCTCACCTATCGAACCATTGCAAGTACAATTCGCATATACTTCATCAATATTCTCCCAGCTATCGCC TACACCTTGGATATGTATCGCCGAACCGGAGAGTTCTATGGCATCAACGAAGCGCTGTTTTCCTCTGCTCTCGCG GCTATGGTTTTCAGCGTCTTGGGCGCACAACCACTCACTATCGTTGGTATCACAGGACTAATATCGCTGTTCAAC TATACCATATATGATATCATAGTCATCTATGAGCCGGCTATATATGCCAACTTCATGTGCTGGACTGCTATCTGG GCAGCGATCTTTCATTGGATTGTTGCCGTGTGCAACCTCTGCGATTATATGCGCTATGTCACGGACTTTTCATCT GAATCGTTTGGTGCATATGTTGGAATCATCTATTGCATAAAGGGAGTCGAAGAGCTGGTGAATGAGTTCACTGTC TACGGTCCAACCGCAGGCTTCATGAGCTGCATGATTGCTATACTGTATTTCTTCACAATATATGGCCTAGAATTG GTAGGATCCAGCACGATTTGTCGACCATGGCTTCGTGAACTACTTGCAGATTATGCTTATGTGATCGGAACAATC TTCTGGGTAGGATTCGCGCATATCCCCGGCAATCTCAAAGCCACTGGCATCTCATTCGTGCCCATCACTCGGGCA TTCTATCCAACACAGCCGCGTGGCTGGCTAATTCACTTCTGGGAACTGGAGACAAAATGGGTCTTTGCAGCCCTG CCTTTCGGATTCTTGGTCATGCTGCTCTTCTATTATGACCATAACGTCAGCAGTCTCGGAGCTCAAGGCCGACAA TACCCACTGGAAAAGCCAGCCGGATTCCACTGGGACTTCTTTCTCCTAGGCTGCACCACCTTCATCGCCGGTATC ACTGGCATCCCAATGCCCAACGGCCTCGTCCCACAGGTACAACCCCCCACTTTCAAGCACACAAACTCCTTACTT ACATACCCACCAATCCAGGCACCCGTCCACACCACCTCCCTAACCGTTACTGAAACCACCCTTCACATCATCCCT ATCTCAGACCCAGAGTCCGAGGGCACCGAAATCTGCCGACCCATCATTACCCCGACAGCTGTTATCGAGCAACGC ATCTCCCACTTCCTAATGGGTCTCGCCATAATTGGCACCATGACCGGACCTCTTCTGATAGTCCTACACACCATG CCCGCCGCCGTGTTCGCAGGTGTCTTCTTCATTGTAGGCTGGGGATCCATAGAATCGAACGGCATTCTGCACAAG ATCATCTTTCTCCTTCGTGAGGATCGATTTATCCCGCGGAATGAGAAGTTACTCCGTGTTCCGAGGCGGAAGATT ATGCTCTATGTGATGTGCCAGGTTATTGGAGTTGCCGCGTGCGTGGCGATCTCGCAGACTATTGCGGCAATTGGG TTCCCGATTTTGATCATTGGGTTGATTCCGTTTAGAGTGTGGGTTGTACCGAGGTGGTTTGGAGTGGAGGAGTTG GGGGTGTTGGATGGGTTGACGGCGGATGGGGAGGCGGTTTTGTGTAGTTTGGGAGGACCACCTAGGTTTCCTGGG GAGGCAAGAGGGGTGGAGGGTGAGAGACAGAAGGGTGGGGAGTGA |
| Transcript | >Ani_SJS100_1|g7620.t1 ATGCCCGGCACTAAGTACTTCGGTGGGCAGAGTCCATATACCTACTCCTACGACAATCGGACAGAATGGAGACGC TTTCGTATGCTGAATCCATGCAGAGGCATGTATCACGATGTCCGTCGACGACTACCCCACTACTGGAGTGATATT CGAGATGCGCTCACCTATCGAACCATTGCAAGTACAATTCGCATATACTTCATCAATATTCTCCCAGCTATCGCC TACACCTTGGATATGTATCGCCGAACCGGAGAGTTCTATGGCATCAACGAAGCGCTGTTTTCCTCTGCTCTCGCG GCTATGGTTTTCAGCGTCTTGGGCGCACAACCACTCACTATCGTTGGTATCACAGGACTAATATCGCTGTTCAAC TATACCATATATGATATCATAGTCATCTATGAGCCGGCTATATATGCCAACTTCATGTGCTGGACTGCTATCTGG GCAGCGATCTTTCATTGGATTGTTGCCGTGTGCAACCTCTGCGATTATATGCGCTATGTCACGGACTTTTCATCT GAATCGTTTGGTGCATATGTTGGAATCATCTATTGCATAAAGGGAGTCGAAGAGCTGGTGAATGAGTTCACTGTC TACGGTCCAACCGCAGGCTTCATGAGCTGCATGATTGCTATACTGTATTTCTTCACAATATATGGCCTAGAATTG GTAGGATCCAGCACGATTTGTCGACCATGGCTTCGTGAACTACTTGCAGATTATGCTTATGTGATCGGAACAATC TTCTGGGTAGGATTCGCGCATATCCCCGGCAATCTCAAAGCCACTGGCATCTCATTCGTGCCCATCACTCGGGCA TTCTATCCAACACAGCCGCGTGGCTGGCTAATTCACTTCTGGGAACTGGAGACAAAATGGGTCTTTGCAGCCCTG CCTTTCGGATTCTTGGTCATGCTGCTCTTCTATTATGACCATAACGTCAGCAGTCTCGGAGCTCAAGGCCGACAA TACCCACTGGAAAAGCCAGCCGGATTCCACTGGGACTTCTTTCTCCTAGGCTGCACCACCTTCATCGCCGGTATC ACTGGCATCCCAATGCCCAACGGCCTCGTCCCACAGGTACAACCCCCCACTTTCAAGCACACAAACTCCTTACTT ACATACCCACCAATCCAGGCACCCGTCCACACCACCTCCCTAACCGTTACTGAAACCACCCTTCACATCATCCCT ATCTCAGACCCAGAGTCCGAGGGCACCGAAATCTGCCGACCCATCATTACCCCGACAGCTGTTATCGAGCAACGC ATCTCCCACTTCCTAATGGGTCTCGCCATAATTGGCACCATGACCGGACCTCTTCTGATAGTCCTACACACCATG CCCGCCGCCGTGTTCGCAGGTGTCTTCTTCATTGTAGGCTGGGGATCCATAGAATCGAACGGCATTCTGCACAAG ATCATCTTTCTCCTTCGTGAGGATCGATTTATCCCGCGGAATGAGAAGTTACTCCGTGTTCCGAGGCGGAAGATT ATGCTCTATGTGATGTGCCAGGTTATTGGAGTTGCCGCGTGCGTGGCGATCTCGCAGACTATTGCGGCAATTGGG TTCCCGATTTTGATCATTGGGTTGATTCCGTTTAGAGTGTGGGTTGTACCGAGGTGGTTTGGAGTGGAGGAGTTG GGGGTGTTGGATGGGTTGACGGCGGATGGGGAGGCGGTTTTGTGTAGTTTGGGAGGACCACCTAGGTTTCCTGGG GAGGCAAGAGGGGTGGAGGGTGAGAGACAGAAGGGTGGGGAGTGA |
| Gene | >Ani_SJS100_1|g7620.t1 ATGCCCGGCACTAAGTACTTCGGTGGGCAGAGTCCATATACCTACTCCTACGACAATCGGACAGAATGGAGACGC TTTCGTATGCTGAATCCATGCAGAGGCATGTATCACGATGTCCGTCGACGACTACCCCACTACTGGAGTGATATT CGAGATGCGCTCACCTATCGAACCATTGCAAGTACAATTCGCATATACTTCATCAAGTAGGCCCCTAAATAGACC ACTTTGGTGTTGTCCTTACTGAAAATATCCAGTATTCTCCCAGCTATCGCCTACACCTTGGATATGTATCGCCGA ACCGGAGAGTTCTATGGCATCAACGAAGCGCTGTTTTCCTCTGCTCTCGCGGCTATGGTTTTCAGCGTCTTGGGC GCACAACCACTCACTATCGTTGGTATCACAGGACTAATATCGCTGTTCAACTATACCATATATGATATCATAGTC ATCTATGAGCCGGCTATATATGCCAACTTCATGTGCTGGACTGCTATCTGGGCAGCGATCTTTCATTGGATTGTT GCCGTGTGCAACCTCTGCGATTATATGCGCTATGTCACGGACTTTTCATCTGAATCGTTTGGTGCATATGTTGGA ATCATCTATTGCAGTAAGTCAGGAACGGTATACCTTCTTGTAGGGACGGCTACTAAGTCGAGTAGTAAAGGGAGT CGAAGAGCTGGTGAATGAGTTCACTGTCTACGGTCCAACCGCAGGCTTCATGAGCTGCATGATTGCTATACTGTA TTTCTTCACAATATATGGCCTAGAATTGGTAGGATCCAGCACGATTTGTCGACCATGGCTTCGTGAACTACTTGC AGATTATGCTTATGTGGTAGGATTTACCTCCTTTCTACGCCTGTAAACCTCCGGCTCACTATTCGCCAGATCGGA ACAATCTTCTGGGTAGGATTCGCGCATATCCCCGGCAATCTCAAAGCCACTGGCATCTCATTCGTGCCCATCACT CGGGCATTCTATCCAACACAGCCGCGTGGCTGGCTAATTCACTTCTGGGAACTGGAGACAAAATGGGTCTTTGCA GCCCTGCCTTTCGGATTCTTGGTCATGCTGCTCTTCTATTATGACCATGTAAGTAATTCCCCAGTCAACGCGAAT ATTACTTCCCCCTAGTGACATAATAACATCGAACAGAACGTCAGCAGTCTCGGAGCTCAAGGCCGACAATACCCA CTGGAAAAGCCAGCCGGATTCCACTGGGACTTCTTTCTCCTAGGCTGCACCACCTTCATCGCCGGTATCACTGGC ATCCCAATGCCCAACGGCCTCGTCCCACAGGTACAACCCCCCACTTTCAAGCACACAAACTCCTTACTTACATAC CCACCAATCCAGGCACCCGTCCACACCACCTCCCTAACCGTTACTGAAACCACCCTTCACATCATCCCTATCTCA GACCCAGAGTCCGAGGGCACCGAAATCTGCCGACCCATCATTACCCCGACAGCTGTTATCGAGCAACGCATCTCC CACTTCCTAATGGGTCTCGCCATAATTGGCACCATGACCGGACCTCTTCTGATAGTCCTACACACCATGCCCGCC GCCGTGTTCGCAGGTGTCTTCTTCATTGTAGGCTGGGGATCCATAGAATCGAACGGCATTCTGCACAAGATCATC TTTCTCCTTCGTGAGGATCGATTTATCCCGCGGAATGAGAAGTTACTCCGTGTTCCGAGGCGGAAGATTATGCTC TATGTGATGTGCCAGGTTATTGGAGTTGCCGCGTGCGTGGCGATCTCGCAGACTATTGCGGCAATTGGGTTCCCG ATTTTGATCATTGGGTTGATTCCGTTTAGAGTGTGGGTTGTACCGAGGTGGTTTGGAGTGGAGGAGTTGGGGGTG TTGGATGGGTTGACGGCGGATGGGGAGGCGGTTTTGTGTAGTTTGGGAGGACCACCTAGGTTTCCTGGGGAGGCA AGAGGGGTGGAGGGTGAGAGACAGAAGGGTGGGGAGTGA |