Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g7569.t1
Gene name
Locationscaffold_054:8213..8927
Strand+
Gene length (bp)714
Transcript length (bp)429
Coding sequence length (bp)429
Protein length (aa) 143

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2.3E-17 13 79
PF00125 Histone Core histone H2A/H2B/H3/H4 4.0E-07 4 80

GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0003676 nucleic acid binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 33 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Histone-like TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g7569.t1
MSDREFSANDDLSLPKATVQKIITEILPPSSGQTFSKDARDLLMECCVEFITLISSEANDISEKEAKKTIACEHV
ERALRDLGFSDYIPDVLAVAEEHKEQLKSREKKQSKMEQSGLSEEELLRQQQELFRSATEKYHAAPE*
Coding >Ani_SJS100_1|g7569.t1
ATGTCAGATCGCGAATTCAGTGCGAACGATGACTTGTCGCTACCTAAAGCGACGGTTCAAAAGATCATCACCGAG
ATCCTACCTCCTTCATCCGGCCAGACATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCTGCGTTGAATTC
ATCACTTTGATCTCCTCCGAAGCCAACGATATCAGTGAAAAGGAAGCCAAGAAGACCATCGCCTGCGAACATGTC
GAGCGCGCCCTCCGTGATCTCGGTTTCAGCGACTACATCCCCGATGTCCTTGCTGTCGCGGAGGAACACAAAGAG
CAGTTGAAGTCGCGAGAGAAGAAGCAGAGCAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAGCTTCTACGGCAG
CAACAGGAGTTGTTCCGCTCAGCTACTGAGAAGTATCACGCTGCTCCGGAGTGA
Transcript >Ani_SJS100_1|g7569.t1
ATGTCAGATCGCGAATTCAGTGCGAACGATGACTTGTCGCTACCTAAAGCGACGGTTCAAAAGATCATCACCGAG
ATCCTACCTCCTTCATCCGGCCAGACATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCTGCGTTGAATTC
ATCACTTTGATCTCCTCCGAAGCCAACGATATCAGTGAAAAGGAAGCCAAGAAGACCATCGCCTGCGAACATGTC
GAGCGCGCCCTCCGTGATCTCGGTTTCAGCGACTACATCCCCGATGTCCTTGCTGTCGCGGAGGAACACAAAGAG
CAGTTGAAGTCGCGAGAGAAGAAGCAGAGCAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAGCTTCTACGGCAG
CAACAGGAGTTGTTCCGCTCAGCTACTGAGAAGTATCACGCTGCTCCGGAGTGA
Gene >Ani_SJS100_1|g7569.t1
ATGTCAGATCGCGAATTCAGTGGTAAGTTCTTTGCCAGATTACTTCCTGGTGCGATATTATGATGTCAAGCTAAC
TTGCGGTTTTCCTAGCGAACGATGACTTGTCGCTACCTAAAGGTATGTCGCCTTCCGCCGTGTTGTCGCGTCGCA
TCGACTCCCCCACTTTTGAGGGCAGTGGGACTCGTCGCCCTTTGCTTTGCCTCCCTCGGACTCAGTATAAAATAT
AATCAAATATCCATTATATACTAAATCGCAAACCATACTCACAGCGACGGTTCAAAAGATCATCACCGAGATCCT
ACCTCCTTCATCCGGCCAGACATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCTGCGTTGAATTCATCAC
TTTGATCTCCTCCGAAGCCAACGATATCAGTGAAAAGGAAGCCAAGAAGACCATCGCCTGCGAACATGTCGAGCG
CGCCCTCCGTGATCTCGGTTTCAGCGACTACATCCCCGATGTCCTTGCTGTCGCGGAGGAACACAAAGAGCAGTT
GAAGGTATGTGGCTGATACCATTACCTCGTTTGTGGCATTGTCCGGCTAACATGGATCGATTACACTAGTCGCGA
GAGAAGAAGCAGAGCAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAGCTTCTACGGCAGCAACAGGAGTTGTTC
CGCTCAGCTACTGAGAAGTATCACGCTGCTCCGGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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