Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g7483.t1
Gene name
Locationscaffold_053:14095..14565
Strand+
Gene length (bp)470
Transcript length (bp)312
Coding sequence length (bp)312
Protein length (aa) 104

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00505 HMG_box HMG (high mobility group) box 1.9E-25 25 93
PF09011 HMG_box_2 HMG-box domain 1.5E-18 22 93

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
HMG

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g7483.t1
MPKEKTTRKTKPRGTERRKKDPNAPKRGLSAYMFFANDNREKVREENPGISFGQVGKMLGERWKALSDTDRRPYE
EKAAADKKRYEDEKASYNAAAEEDEESS*
Coding >Ani_SJS100_1|g7483.t1
ATGCCCAAGGAGAAGACCACCCGCAAGACCAAGCCCCGTGGCACTGAGCGCAGAAAGAAGGACCCCAACGCTCCC
AAGCGTGGTCTCTCTGCCTACATGTTCTTCGCCAACGACAACCGTGAGAAGGTTCGCGAGGAGAACCCTGGCATC
TCTTTCGGCCAAGTCGGCAAGATGCTCGGAGAGCGGTGGAAGGCTCTGAGCGACACTGACCGTCGCCCTTACGAG
GAGAAGGCTGCCGCTGATAAGAAGCGTTACGAAGACGAGAAGGCCAGCTACAACGCGGCTGCTGAGGAGGACGAG
GAATCATCCTAA
Transcript >Ani_SJS100_1|g7483.t1
ATGCCCAAGGAGAAGACCACCCGCAAGACCAAGCCCCGTGGCACTGAGCGCAGAAAGAAGGACCCCAACGCTCCC
AAGCGTGGTCTCTCTGCCTACATGTTCTTCGCCAACGACAACCGTGAGAAGGTTCGCGAGGAGAACCCTGGCATC
TCTTTCGGCCAAGTCGGCAAGATGCTCGGAGAGCGGTGGAAGGCTCTGAGCGACACTGACCGTCGCCCTTACGAG
GAGAAGGCTGCCGCTGATAAGAAGCGTTACGAAGACGAGAAGGCCAGCTACAACGCGGCTGCTGAGGAGGACGAG
GAATCATCCTAA
Gene >Ani_SJS100_1|g7483.t1
ATGCCCAAGGAGAAGACCACCCGCAAGACCAAGCCCCGTGGCACTGAGCGCAGAAAGAAGGGTATGTATGCCTTG
CTCTATCTTCGGAACTCATGCTAATGCATAGCTCAGACCCCAACGCTCCCAAGCGTGGTCTCTCTGCCTACATGT
TCTTCGCCAACGACAACCGTGAGAAGGTTCGCGAGGAGAACCCTGGCATCTCTTTCGGTAAGTCACTTCTGGACC
TTGAATGGGAATGTAGGCGTCTAACTTCATGCAGGCCAAGTCGGCAAGATGCTCGGAGAGCGGTGGAAGGCTCTG
AGCGACACTGACCGTCGCCCTTACGAGGAGAAGGCTGCCGCTGATAAGAAGCGTTACGAAGACGAGAAGGCCAGC
TACAACGTAAGTTGACACTCCTGCCGTTTCTTTGTCAGCCAATGCTAATGAACTTTGAACAGGCGGCTGCTGAGG
AGGACGAGGAATCATCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail