© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g7428.t1 |
| Gene name | |
| Location | scaffold_052:80898..82056 |
| Strand | - |
| Gene length (bp) | 1158 |
| Transcript length (bp) | 1038 |
| Coding sequence length (bp) | 1038 |
| Protein length (aa) | 346 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14612 | Ino80_Iec3 | IEC3 subunit of the Ino80 complex, chromatin re-modelling | 9.7E-83 | 29 | 255 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006338 | chromatin remodeling | Yes |
| GO:0031011 | Ino80 complex | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:1904949 | ATPase complex | No |
| GO:1902494 | catalytic complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0043226 | organelle | No |
| GO:0009987 | cellular process | No |
| GO:0070603 | SWI/SNF superfamily-type complex | No |
| GO:0043229 | intracellular organelle | No |
| GO:0097346 | INO80-type complex | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0016043 | cellular component organization | No |
| GO:0006325 | chromatin organization | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g7428.t1 MSHTIDDTHSVTESLPDAPGGAPTKQSYRSFKKKFAKLKVKFELQMRESESLIREGLRIEDLSKRIQAQNDQLLE VLLEFNDSLHVSPSMRYDLSAPEDESFLPPPERDIPKSYNDPVVASSVLQEAKARLAAGRLSSDAYREVEDDVKR GQAFAPRMQYSTLSTFPHSAPLQPDNPDDWNPAQELGFLTPEYETEYCLALDAKLGDDEALEQLECVPKKPSLAE REREAALRSHVSVHNWLRQNQPQIFLQDNENASEKSGSRPSNLRTSKRAPAQSRKEEDVYDDDSILETASTSGGT RGKRKRDEDTGYRPKGGSSRSNRKKKDEENATPKRPSKRSSGVGA* |
| Coding | >Ani_SJS100_1|g7428.t1 ATGTCGCATACCATTGATGATACTCATTCCGTGACTGAAAGTTTACCGGATGCCCCCGGGGGCGCCCCTACGAAG CAGTCCTACCGATCATTCAAGAAGAAGTTTGCGAAGCTTAAGGTCAAGTTTGAGCTTCAGATGCGAGAGAGCGAG TCCCTCATCCGCGAAGGGTTGCGTATCGAGGATCTGTCCAAGAGGATTCAGGCACAAAATGATCAGCTCCTAGAA GTCCTGCTAGAGTTCAACGATAGTCTCCATGTGTCTCCAAGTATGCGGTACGATCTGAGCGCGCCGGAAGATGAA TCCTTCTTACCACCACCCGAGCGAGACATTCCGAAATCGTACAATGACCCTGTCGTAGCGAGCTCTGTTCTACAA GAAGCCAAGGCCAGACTGGCTGCTGGACGTTTGTCCAGCGATGCTTATCGTGAGGTGGAGGATGATGTTAAGCGC GGTCAGGCTTTTGCACCGCGTATGCAGTACAGCACTCTGTCGACATTCCCCCATTCTGCGCCTTTGCAGCCAGAC AATCCCGACGACTGGAATCCCGCGCAAGAACTTGGATTTCTTACTCCCGAATATGAGACCGAATACTGCCTGGCT CTAGATGCTAAACTGGGCGACGACGAGGCTCTGGAGCAGCTCGAGTGCGTTCCTAAGAAGCCATCACTAGCGGAA CGCGAGAGAGAGGCCGCTCTTCGGAGCCATGTCTCTGTACACAATTGGTTGCGCCAGAACCAACCCCAAATATTC TTGCAGGATAACGAGAACGCCTCGGAAAAGTCCGGCTCTCGACCCTCCAATCTACGCACTTCTAAGAGGGCGCCG GCTCAATCACGCAAAGAGGAGGATGTGTATGATGATGACAGTATCCTGGAAACTGCGTCAACCTCTGGAGGTACG AGAGGCAAGCGCAAGCGCGATGAAGATACCGGATATCGACCCAAGGGCGGTAGCAGTCGCTCAAACCGGAAGAAG AAGGATGAGGAAAATGCGACCCCCAAACGGCCGTCGAAGCGGTCTTCGGGCGTCGGTGCCTGA |
| Transcript | >Ani_SJS100_1|g7428.t1 ATGTCGCATACCATTGATGATACTCATTCCGTGACTGAAAGTTTACCGGATGCCCCCGGGGGCGCCCCTACGAAG CAGTCCTACCGATCATTCAAGAAGAAGTTTGCGAAGCTTAAGGTCAAGTTTGAGCTTCAGATGCGAGAGAGCGAG TCCCTCATCCGCGAAGGGTTGCGTATCGAGGATCTGTCCAAGAGGATTCAGGCACAAAATGATCAGCTCCTAGAA GTCCTGCTAGAGTTCAACGATAGTCTCCATGTGTCTCCAAGTATGCGGTACGATCTGAGCGCGCCGGAAGATGAA TCCTTCTTACCACCACCCGAGCGAGACATTCCGAAATCGTACAATGACCCTGTCGTAGCGAGCTCTGTTCTACAA GAAGCCAAGGCCAGACTGGCTGCTGGACGTTTGTCCAGCGATGCTTATCGTGAGGTGGAGGATGATGTTAAGCGC GGTCAGGCTTTTGCACCGCGTATGCAGTACAGCACTCTGTCGACATTCCCCCATTCTGCGCCTTTGCAGCCAGAC AATCCCGACGACTGGAATCCCGCGCAAGAACTTGGATTTCTTACTCCCGAATATGAGACCGAATACTGCCTGGCT CTAGATGCTAAACTGGGCGACGACGAGGCTCTGGAGCAGCTCGAGTGCGTTCCTAAGAAGCCATCACTAGCGGAA CGCGAGAGAGAGGCCGCTCTTCGGAGCCATGTCTCTGTACACAATTGGTTGCGCCAGAACCAACCCCAAATATTC TTGCAGGATAACGAGAACGCCTCGGAAAAGTCCGGCTCTCGACCCTCCAATCTACGCACTTCTAAGAGGGCGCCG GCTCAATCACGCAAAGAGGAGGATGTGTATGATGATGACAGTATCCTGGAAACTGCGTCAACCTCTGGAGGTACG AGAGGCAAGCGCAAGCGCGATGAAGATACCGGATATCGACCCAAGGGCGGTAGCAGTCGCTCAAACCGGAAGAAG AAGGATGAGGAAAATGCGACCCCCAAACGGCCGTCGAAGCGGTCTTCGGGCGTCGGTGCCTGA |
| Gene | >Ani_SJS100_1|g7428.t1 ATGTCGCATACCATTGATGATACTCATTCCGTGACTGAAAGTTTACCGGATGCCCCCGGGGGCGCCCCTACGAAG CAGTCCTACCGATCATTCAAGTGAGTGATCCCCTGAAAGCCTGGGGCGGCGCGTTGCTAATTCGACCGATCTACC ATCCAGGAAGAAGTTTGCGAAGCTTAAGGTCAAGTTTGAGCTTCAGATGCGAGAGAGCGAGTCCCTCATCCGCGA AGGGTTGCGTATCGAGGATCTGTCCAAGAGGATTCAGGCACAAAATGAGTATGTTGCGCGCCCAACGTCTATGAC TTCTCGGTCGCTTACAATTGATCAACCCACAGTCAGCTCCTAGAAGTCCTGCTAGAGTTCAACGATAGTCTCCAT GTGTCTCCAAGTATGCGGTACGATCTGAGCGCGCCGGAAGATGAATCCTTCTTACCACCACCCGAGCGAGACATT CCGAAATCGTACAATGACCCTGTCGTAGCGAGCTCTGTTCTACAAGAAGCCAAGGCCAGACTGGCTGCTGGACGT TTGTCCAGCGATGCTTATCGTGAGGTGGAGGATGATGTTAAGCGCGGTCAGGCTTTTGCACCGCGTATGCAGTAC AGCACTCTGTCGACATTCCCCCATTCTGCGCCTTTGCAGCCAGACAATCCCGACGACTGGAATCCCGCGCAAGAA CTTGGATTTCTTACTCCCGAATATGAGACCGAATACTGCCTGGCTCTAGATGCTAAACTGGGCGACGACGAGGCT CTGGAGCAGCTCGAGTGCGTTCCTAAGAAGCCATCACTAGCGGAACGCGAGAGAGAGGCCGCTCTTCGGAGCCAT GTCTCTGTACACAATTGGTTGCGCCAGAACCAACCCCAAATATTCTTGCAGGATAACGAGAACGCCTCGGAAAAG TCCGGCTCTCGACCCTCCAATCTACGCACTTCTAAGAGGGCGCCGGCTCAATCACGCAAAGAGGAGGATGTGTAT GATGATGACAGTATCCTGGAAACTGCGTCAACCTCTGGAGGTACGAGAGGCAAGCGCAAGCGCGATGAAGATACC GGATATCGACCCAAGGGCGGTAGCAGTCGCTCAAACCGGAAGAAGAAGGATGAGGAAAATGCGACCCCCAAACGG CCGTCGAAGCGGTCTTCGGGCGTCGGTGCCTGA |