Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g7281.t1
Gene name
Location	scaffold_050:108522..109258
Strand	+
Gene length (bp)	736
Transcript length (bp)	444
Coding sequence length (bp)	444
Protein length (aa)	148

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00428	Ribosomal_60s	60s Acidic ribosomal protein	8.4E-23	61	146

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 30	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	10	32	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g7281.t1 MGPQPTSRIALFLIFNFGFHFSLFPSITSLNPQRTRRVSLRPTLRLNRLILVFTTTTIQNESVLSAVGIDAEEER LQKLLAELEGKDLQELISEGTQKLASVPSGGAGAAAAAPAAGGAAAAEAPAEEKKEEAAEESDEDMGFGLFD*
Coding	>Ani_SJS100_1\|g7281.t1 ATGGGACCACAACCCACCAGCCGCATCGCACTTTTCTTGATTTTCAACTTCGGATTCCATTTCTCTCTTTTTCCG TCCATCACATCGCTCAACCCCCAGCGAACTCGACGTGTCAGTCTCCGCCCAACTTTGCGGTTAAATCGATTGATT CTCGTGTTCACCACCACAACTATTCAAAATGAATCCGTCCTCTCCGCCGTCGGCATTGACGCTGAGGAGGAGCGC CTCCAGAAGCTCCTTGCTGAGCTTGAGGGCAAGGACCTCCAGGAGCTCATCTCCGAGGGTACCCAGAAGCTCGCT TCCGTTCCCTCCGGTGGTGCCGGTGCTGCTGCCGCTGCCCCCGCTGCCGGTGGCGCCGCTGCTGCTGAGGCTCCC GCTGAGGAGAAGAAGGAGGAGGCTGCTGAGGAGTCCGATGAGGACATGGGCTTCGGTCTCTTCGACTAA
Transcript	>Ani_SJS100_1\|g7281.t1 ATGGGACCACAACCCACCAGCCGCATCGCACTTTTCTTGATTTTCAACTTCGGATTCCATTTCTCTCTTTTTCCG TCCATCACATCGCTCAACCCCCAGCGAACTCGACGTGTCAGTCTCCGCCCAACTTTGCGGTTAAATCGATTGATT CTCGTGTTCACCACCACAACTATTCAAAATGAATCCGTCCTCTCCGCCGTCGGCATTGACGCTGAGGAGGAGCGC CTCCAGAAGCTCCTTGCTGAGCTTGAGGGCAAGGACCTCCAGGAGCTCATCTCCGAGGGTACCCAGAAGCTCGCT TCCGTTCCCTCCGGTGGTGCCGGTGCTGCTGCCGCTGCCCCCGCTGCCGGTGGCGCCGCTGCTGCTGAGGCTCCC GCTGAGGAGAAGAAGGAGGAGGCTGCTGAGGAGTCCGATGAGGACATGGGCTTCGGTCTCTTCGACTAA
Gene	>Ani_SJS100_1\|g7281.t1 ATGGGAGTTAACGCATGCGCCACGGCCGCTCGCTTAACCGGAACTAGCACGATCTGCACTAGCCACAACCCACCA GCCGCATCGCACTTTTCTTGATTTTCAACTTCGGATTCCATTTCTCTCTTTTTCCGTCCATCACATCGCTCAACC CCCAGCGAACTCGACGTGTCAGTCTCCGCCCAACTTTGCGGTTAAATCGATTGATTCTCGTGTTCACCACCACAA CTGTACGTTGCCTTCTTGATTGCCTCGTTGCGAATTTCGACAGTACGACCACGACATTCTCGGCGCAGTTGTTCT GACAGGTTGTCTTGCAGATTCAAAATGAAGTACCTCGCCGCCTACCTTCTGTTGGCCCTTGCTGGCAACAACACC CCCTCCGCTGAGGACATCAAGTCCGTCCTCTCCGCCGTCGGCATTGACGCTGAGGAGGAGCGCCTCCAGAAGCTC CTTGCTGAGCTTGAGGGCAAGGACCTCCAGGAGGTCAGTTAACGCCCTTAAAATCTACCAAGAAATTTTGCGATT ACAAGATGGAATACTGACAATGGTTTTTCTACAACAGCTCATCTCCGAGGGTACCCAGAAGCTCGCTTCCGTTCC CTCCGGTGGTGCCGGTGCTGCTGCCGCTGCCCCCGCTGCCGGTGGCGCCGCTGCTGCTGAGGCTCCCGCTGAGGA GAAGAAGGAGGAGGCTGCTGAGGAGTCCGATGAGGACATGGGCTTCGGTCTCTTCGACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail