© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6979.t1 |
| Gene name | |
| Location | scaffold_046:116272..117566 |
| Strand | + |
| Gene length (bp) | 1294 |
| Transcript length (bp) | 1092 |
| Coding sequence length (bp) | 1092 |
| Protein length (aa) | 364 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01208 | URO-D | Uroporphyrinogen decarboxylase (URO-D) | 7.0E-130 | 9 | 360 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004853 | uroporphyrinogen decarboxylase activity | Yes |
| GO:0006779 | porphyrin-containing compound biosynthetic process | Yes |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0016829 | lyase activity | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0033014 | tetrapyrrole biosynthetic process | No |
| GO:0016831 | carboxy-lyase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0016830 | carbon-carbon lyase activity | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0033013 | tetrapyrrole metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0006778 | porphyrin-containing compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6979.t1 MQHQFEPLKNDLLLRAARGEKVQRPPIWVMRQAGRYLPEYHEAKAGRDFFECCRDPEVASTLTIQPIDRYAGLID AAIIFSDILVIPQAMGMQVEMVDKKGPHFPEPLQSPDDGQYEKVMQKDVDVKSELDYVYKAITLTRHKLQGRVPL IGFCGAPWTLLCYMVEGGGTKLFVQSKKWIYKYPKESQALLQKIAEICVEYLALQVAAGAQLVQVFDSWAGELSP AAFKSFSLPYLRHISANLPKKLKEMGLEPVPMTVFAKGAWFGLEDLCESGYNVVGLDWLHDPAEARRIANGRVTI QGNADPGVLYGGREAITEAVETMVRGFEKGKQGWIANLGHGVTPFVNPDDLKFFFEEIHRLTV* |
| Coding | >Ani_SJS100_1|g6979.t1 ATGCAGCATCAATTCGAGCCATTGAAGAACGACCTCTTGCTGAGGGCTGCTAGGGGCGAGAAAGTCCAGCGTCCT CCGATATGGGTTATGCGGCAAGCTGGCCGTTATCTCCCCGAATACCATGAAGCCAAAGCCGGCCGCGACTTTTTC GAATGCTGCCGCGACCCCGAAGTCGCATCGACGTTGACGATCCAGCCCATCGACCGCTACGCCGGACTCATCGAT GCTGCGATCATCTTCTCCGATATTCTGGTCATTCCCCAGGCCATGGGAATGCAGGTTGAGATGGTCGACAAGAAG GGACCCCACTTCCCCGAGCCGCTCCAGTCGCCCGATGATGGACAGTACGAGAAAGTGATGCAGAAGGATGTGGAT GTCAAGTCGGAGCTCGACTACGTCTACAAGGCCATTACCCTCACCCGCCACAAGCTGCAGGGTCGTGTGCCGTTG ATCGGCTTTTGCGGTGCCCCGTGGACTCTGCTGTGCTACATGGTAGAGGGAGGCGGCACGAAACTGTTCGTCCAG TCGAAGAAGTGGATCTACAAGTACCCCAAGGAGTCGCAGGCTCTCCTGCAGAAGATCGCCGAGATCTGTGTTGAA TACCTGGCGCTTCAGGTTGCTGCTGGTGCTCAGCTGGTACAGGTCTTCGATTCCTGGGCGGGTGAGCTGTCTCCG GCCGCTTTCAAGTCATTCTCTCTTCCCTACCTGCGTCACATTTCGGCGAATCTGCCGAAGAAGTTGAAGGAGATG GGTCTGGAGCCTGTTCCGATGACAGTCTTCGCGAAGGGTGCGTGGTTTGGTCTTGAGGATCTCTGCGAGTCGGGC TACAATGTTGTTGGCTTGGACTGGCTGCACGACCCCGCTGAGGCTAGGCGGATTGCCAATGGTCGTGTGACGATC CAGGGTAATGCTGACCCTGGTGTTCTCTATGGAGGACGCGAGGCTATCACGGAGGCTGTGGAGACTATGGTTCGG GGATTCGAGAAGGGCAAGCAAGGCTGGATTGCCAACTTGGGTCACGGTGTGACTCCTTTCGTCAACCCGGATGAT CTCAAGTTCTTCTTCGAAGAGATCCACCGTCTGACGGTCTAA |
| Transcript | >Ani_SJS100_1|g6979.t1 ATGCAGCATCAATTCGAGCCATTGAAGAACGACCTCTTGCTGAGGGCTGCTAGGGGCGAGAAAGTCCAGCGTCCT CCGATATGGGTTATGCGGCAAGCTGGCCGTTATCTCCCCGAATACCATGAAGCCAAAGCCGGCCGCGACTTTTTC GAATGCTGCCGCGACCCCGAAGTCGCATCGACGTTGACGATCCAGCCCATCGACCGCTACGCCGGACTCATCGAT GCTGCGATCATCTTCTCCGATATTCTGGTCATTCCCCAGGCCATGGGAATGCAGGTTGAGATGGTCGACAAGAAG GGACCCCACTTCCCCGAGCCGCTCCAGTCGCCCGATGATGGACAGTACGAGAAAGTGATGCAGAAGGATGTGGAT GTCAAGTCGGAGCTCGACTACGTCTACAAGGCCATTACCCTCACCCGCCACAAGCTGCAGGGTCGTGTGCCGTTG ATCGGCTTTTGCGGTGCCCCGTGGACTCTGCTGTGCTACATGGTAGAGGGAGGCGGCACGAAACTGTTCGTCCAG TCGAAGAAGTGGATCTACAAGTACCCCAAGGAGTCGCAGGCTCTCCTGCAGAAGATCGCCGAGATCTGTGTTGAA TACCTGGCGCTTCAGGTTGCTGCTGGTGCTCAGCTGGTACAGGTCTTCGATTCCTGGGCGGGTGAGCTGTCTCCG GCCGCTTTCAAGTCATTCTCTCTTCCCTACCTGCGTCACATTTCGGCGAATCTGCCGAAGAAGTTGAAGGAGATG GGTCTGGAGCCTGTTCCGATGACAGTCTTCGCGAAGGGTGCGTGGTTTGGTCTTGAGGATCTCTGCGAGTCGGGC TACAATGTTGTTGGCTTGGACTGGCTGCACGACCCCGCTGAGGCTAGGCGGATTGCCAATGGTCGTGTGACGATC CAGGGTAATGCTGACCCTGGTGTTCTCTATGGAGGACGCGAGGCTATCACGGAGGCTGTGGAGACTATGGTTCGG GGATTCGAGAAGGGCAAGCAAGGCTGGATTGCCAACTTGGGTCACGGTGTGACTCCTTTCGTCAACCCGGATGAT CTCAAGTTCTTCTTCGAAGAGATCCACCGTCTGACGGTCTAA |
| Gene | >Ani_SJS100_1|g6979.t1 ATGCAGCATCAATTCGAGCCATTGAAGAACGACCTCTTGCTGAGGGCTGCTAGGGGTAATTCTGATTTTAAACCA TTATATTCAAAGAGATGGGACTGATATCATTGCAGGCGAGAAAGTCCAGCGTCCTCCGATATGGGTTATGCGGCA AGGTACGCCTCTCTCTACAAACTACTCTCTTCGCACTCTTACGAGTCCCGGATCCAAGTATGTCTCTCTTATAAC TGACCACATTGTGCTTCTTATATAGCTGGCCGTTATCTCCCCGAATACCATGAAGCCAAAGCCGGCCGCGACTTT TTCGAATGCTGCCGCGACCCCGAAGTCGCATCGACGTTGACGATCCAGCCCATCGACCGCTACGCCGGACTCATC GATGCTGCGATCATCTTCTCCGATATTCTGGTCATTCCCCAGGCCATGGGAATGCAGGTTGAGATGGTCGACAAG AAGGGACCCCACTTCCCCGAGCCGCTCCAGTCGCCCGATGATGGACAGTACGAGAAAGTGATGCAGAAGGATGTG GATGTCAAGTCGGAGCTCGACTACGTCTACAAGGCCATTACCCTCACCCGCCACAAGCTGCAGGGTCGTGTGCCG TTGATCGGCTTTTGCGGTGCCCCGTGGACTCTGCTGTGCTACATGGTAGAGGGAGGCGGCACGAAACTGTTCGTC CAGTCGAAGAAGTGGATCTACAAGTACCCCAAGGAGTCGCAGGCTCTCCTGCAGAAGATCGCCGAGATCTGTGTT GAATACCTGGCGCTTCAGGTTGCTGCTGGTGCTCAGCTGGTACAGGTCTTCGATTCCTGGGCGGGTGAGCTGTCT CCGGCCGCTTTCAAGTCATTCTCTCTTCCCTACCTGCGTCACATTTCGGCGAATCTGCCGAAGAAGTTGAAGGAG ATGGGTCTGGAGCCTGTTCCGATGACAGTCTTCGCGAAGGGTGCGTGGTTTGGTCTTGAGGATCTCTGCGAGTCG GGCTACAATGTTGTTGGCTTGGACTGGCTGCACGACCCCGCTGAGGCTAGGCGGATTGCCAATGGTCGTGTGACG ATCCAGGGTAATGCTGACCCTGGTGTTCTCTATGGAGGACGCGAGGCTATCACGGAGGCTGTGGAGACTATGGTT CGGGGATTCGAGAAGGGCAAGCAAGGCTGGATTGCCAACTTGGGTCACGGTGAGCACTGCCACAGCTGGGTTATT CAATAAATGCTAATGTATCACAGGTGTGACTCCTTTCGTCAACCCGGATGATCTCAAGTTCTTCTTCGAAGAGAT CCACCGTCTGACGGTCTAA |