© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g6957.t1 |
| Gene name | |
| Location | scaffold_046:27390..29677 |
| Strand | - |
| Gene length (bp) | 2287 |
| Transcript length (bp) | 2043 |
| Coding sequence length (bp) | 2043 |
| Protein length (aa) | 681 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00474 | SSF | Sodium:solute symporter family | 4.0E-19 | 52 | 408 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 58 | 77 | 19 |
| 3 | 92 | 114 | 22 |
| 4 | 134 | 156 | 22 |
| 5 | 166 | 188 | 22 |
| 6 | 195 | 217 | 22 |
| 7 | 258 | 280 | 22 |
| 8 | 292 | 314 | 22 |
| 9 | 354 | 376 | 22 |
| 10 | 396 | 418 | 22 |
| 11 | 423 | 445 | 22 |
| 12 | 452 | 474 | 22 |
| 13 | 494 | 516 | 22 |
| 14 | 569 | 591 | 22 |
| 15 | 606 | 628 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6957.t1 MSSDTVTFTAPLSQGFGYGIIIGLGFAFALLMIFITWALKRYQNEVQTSEMFSTAGRSVKSGLVAAAVVSSWTWA ATLLQSTTVAYEYGISGPFFYASGATVQIILFATLAIELKRRAPNAHTFLEALRARYGTVVHVVFIVFCLMTNIL VTAMLLTGGSAVLTSLTGVNTVAACFLLPIGVVLYTLFGGIKATFITDYLHTVVIIVVIFIFAFSAYATSDKLGS PGAVYDALVAASKLHPVDGNAEGSYLTMRSKEGGIFWIINLVGNFGTVFLDNGYYNKAIAASPVHAFPGYVIGGL CWFAIPWLCASTLGMTALSLEGTQRLSPDDVTAGLVLPFAAVKLLGYSGAVCTTIMIFMAVTSAFSAQLIAVSSI FTYDIYQAYIDPSAKGKRLVWVSHMTCVFWAIAMAGFSTGLYYAGIGMGYLYLLMGVIISSAVFPGAMSLIWKHQ NWIAAAASPPLGLAVSLIAWLVTTKKQYGILTVTTTGANYPMLAGNVAALLSPVIFSPILTLIFGSQNYDYGTMR AIRRVDDADVAAAAHIDIELIPGEINTQSAAQEEEETRKLNRAALYSRTLTIFMVLCFLILWPIPMYGSSYVFSK KFFTGWVVVGLIWLFCTTFGVVIFPLYEGRESIVRTVRMMALDIMGKRGRRKGMIVGEMTSGDVSGVQTPVLEKK EVLEK* |
| Coding | >Ani_SJS100_1|g6957.t1 ATGTCTTCAGACACTGTCACATTCACAGCGCCTCTCTCGCAAGGGTTTGGATATGGCATCATCATTGGTCTGGGC TTTGCCTTTGCCCTGCTTATGATCTTTATCACCTGGGCTCTGAAGAGATACCAAAATGAAGTGCAGACATCGGAA ATGTTCTCAACGGCTGGAAGATCAGTCAAGTCGGGCTTGGTTGCCGCGGCAGTTGTCAGTAGTTGGACATGGGCT GCAACTCTTCTTCAGTCGACTACTGTGGCTTACGAGTACGGCATCTCGGGTCCTTTCTTCTATGCATCAGGTGCT ACGGTCCAGATCATCTTGTTCGCTACACTGGCCATCGAGCTCAAGCGGAGGGCTCCAAATGCGCATACCTTCCTC GAAGCTCTCCGTGCTCGATACGGAACCGTTGTTCATGTTGTTTTCATCGTTTTCTGCCTGATGACCAACATTCTC GTTACTGCCATGCTGCTTACCGGTGGTTCTGCCGTCCTGACGTCTCTCACGGGGGTTAATACAGTTGCTGCCTGT TTCCTCCTGCCAATTGGTGTCGTGCTCTACACCCTGTTTGGTGGTATAAAGGCAACATTCATCACGGACTATTTG CATACCGTCGTGATTATTGTCGTCATCTTCATCTTTGCATTCTCTGCCTACGCGACTAGCGACAAGCTTGGCTCC CCTGGAGCTGTCTATGATGCACTAGTAGCAGCATCGAAGCTCCACCCAGTTGACGGCAATGCAGAGGGAAGCTAT CTGACCATGAGGTCGAAGGAGGGTGGCATCTTCTGGATTATCAACCTGGTCGGCAACTTTGGTACTGTCTTCCTC GACAACGGATACTACAACAAAGCTATTGCCGCAAGCCCCGTGCACGCTTTCCCCGGATATGTCATTGGTGGTCTT TGCTGGTTCGCAATCCCTTGGTTGTGCGCCAGCACTCTGGGCATGACTGCTCTCTCTCTGGAGGGCACTCAGCGC TTGAGCCCCGACGACGTCACAGCCGGTCTTGTCCTGCCCTTTGCCGCCGTCAAGCTTCTCGGCTACAGCGGCGCA GTATGCACAACAATCATGATCTTCATGGCAGTCACCTCCGCTTTCTCTGCCCAGCTGATTGCTGTCTCATCCATC TTCACCTACGATATCTACCAGGCCTACATCGACCCATCCGCCAAGGGCAAGCGTCTCGTCTGGGTTTCGCACATG ACCTGTGTGTTCTGGGCCATCGCCATGGCCGGCTTCTCCACCGGTCTCTACTACGCTGGTATCGGAATGGGCTAC CTCTACCTGCTGATGGGCGTGATCATCTCCTCTGCAGTCTTCCCCGGCGCCATGTCCCTCATCTGGAAGCACCAG AACTGGATCGCAGCAGCCGCCTCGCCACCCCTCGGCCTTGCAGTCTCCCTTATCGCCTGGCTCGTGACAACCAAG AAACAATACGGCATATTAACCGTCACCACAACCGGCGCAAACTACCCAATGCTCGCCGGTAACGTCGCCGCCCTC CTGAGCCCCGTGATCTTCTCCCCGATCCTCACCCTCATCTTCGGCTCTCAAAACTACGACTACGGCACCATGCGC GCCATTCGCCGCGTCGACGACGCCGACGTAGCAGCAGCCGCTCACATCGACATCGAACTCATCCCCGGCGAAATC AACACCCAGTCCGCCGCCCAGGAGGAAGAAGAAACACGCAAACTCAACCGCGCCGCTCTCTACTCCCGCACCTTG ACCATCTTCATGGTCCTCTGCTTCCTCATTCTCTGGCCCATCCCTATGTATGGCAGCTCGTATGTCTTCAGCAAG AAGTTCTTTACGGGTTGGGTCGTTGTCGGTCTGATTTGGCTTTTCTGCACGACTTTCGGGGTGGTCATTTTCCCG TTGTATGAGGGTCGGGAGAGTATTGTGAGGACGGTGAGGATGATGGCGTTGGATATTATGGGGAAGAGGGGAAGG AGAAAGGGCATGATTGTTGGGGAGATGACGAGTGGGGATGTTTCGGGAGTGCAGACGCCTGTGCTTGAGAAGAAG GAGGTTTTGGAGAAGTAG |
| Transcript | >Ani_SJS100_1|g6957.t1 ATGTCTTCAGACACTGTCACATTCACAGCGCCTCTCTCGCAAGGGTTTGGATATGGCATCATCATTGGTCTGGGC TTTGCCTTTGCCCTGCTTATGATCTTTATCACCTGGGCTCTGAAGAGATACCAAAATGAAGTGCAGACATCGGAA ATGTTCTCAACGGCTGGAAGATCAGTCAAGTCGGGCTTGGTTGCCGCGGCAGTTGTCAGTAGTTGGACATGGGCT GCAACTCTTCTTCAGTCGACTACTGTGGCTTACGAGTACGGCATCTCGGGTCCTTTCTTCTATGCATCAGGTGCT ACGGTCCAGATCATCTTGTTCGCTACACTGGCCATCGAGCTCAAGCGGAGGGCTCCAAATGCGCATACCTTCCTC GAAGCTCTCCGTGCTCGATACGGAACCGTTGTTCATGTTGTTTTCATCGTTTTCTGCCTGATGACCAACATTCTC GTTACTGCCATGCTGCTTACCGGTGGTTCTGCCGTCCTGACGTCTCTCACGGGGGTTAATACAGTTGCTGCCTGT TTCCTCCTGCCAATTGGTGTCGTGCTCTACACCCTGTTTGGTGGTATAAAGGCAACATTCATCACGGACTATTTG CATACCGTCGTGATTATTGTCGTCATCTTCATCTTTGCATTCTCTGCCTACGCGACTAGCGACAAGCTTGGCTCC CCTGGAGCTGTCTATGATGCACTAGTAGCAGCATCGAAGCTCCACCCAGTTGACGGCAATGCAGAGGGAAGCTAT CTGACCATGAGGTCGAAGGAGGGTGGCATCTTCTGGATTATCAACCTGGTCGGCAACTTTGGTACTGTCTTCCTC GACAACGGATACTACAACAAAGCTATTGCCGCAAGCCCCGTGCACGCTTTCCCCGGATATGTCATTGGTGGTCTT TGCTGGTTCGCAATCCCTTGGTTGTGCGCCAGCACTCTGGGCATGACTGCTCTCTCTCTGGAGGGCACTCAGCGC TTGAGCCCCGACGACGTCACAGCCGGTCTTGTCCTGCCCTTTGCCGCCGTCAAGCTTCTCGGCTACAGCGGCGCA GTATGCACAACAATCATGATCTTCATGGCAGTCACCTCCGCTTTCTCTGCCCAGCTGATTGCTGTCTCATCCATC TTCACCTACGATATCTACCAGGCCTACATCGACCCATCCGCCAAGGGCAAGCGTCTCGTCTGGGTTTCGCACATG ACCTGTGTGTTCTGGGCCATCGCCATGGCCGGCTTCTCCACCGGTCTCTACTACGCTGGTATCGGAATGGGCTAC CTCTACCTGCTGATGGGCGTGATCATCTCCTCTGCAGTCTTCCCCGGCGCCATGTCCCTCATCTGGAAGCACCAG AACTGGATCGCAGCAGCCGCCTCGCCACCCCTCGGCCTTGCAGTCTCCCTTATCGCCTGGCTCGTGACAACCAAG AAACAATACGGCATATTAACCGTCACCACAACCGGCGCAAACTACCCAATGCTCGCCGGTAACGTCGCCGCCCTC CTGAGCCCCGTGATCTTCTCCCCGATCCTCACCCTCATCTTCGGCTCTCAAAACTACGACTACGGCACCATGCGC GCCATTCGCCGCGTCGACGACGCCGACGTAGCAGCAGCCGCTCACATCGACATCGAACTCATCCCCGGCGAAATC AACACCCAGTCCGCCGCCCAGGAGGAAGAAGAAACACGCAAACTCAACCGCGCCGCTCTCTACTCCCGCACCTTG ACCATCTTCATGGTCCTCTGCTTCCTCATTCTCTGGCCCATCCCTATGTATGGCAGCTCGTATGTCTTCAGCAAG AAGTTCTTTACGGGTTGGGTCGTTGTCGGTCTGATTTGGCTTTTCTGCACGACTTTCGGGGTGGTCATTTTCCCG TTGTATGAGGGTCGGGAGAGTATTGTGAGGACGGTGAGGATGATGGCGTTGGATATTATGGGGAAGAGGGGAAGG AGAAAGGGCATGATTGTTGGGGAGATGACGAGTGGGGATGTTTCGGGAGTGCAGACGCCTGTGCTTGAGAAGAAG GAGGTTTTGGAGAAGTAG |
| Gene | >Ani_SJS100_1|g6957.t1 ATGTCTTCAGACACTGTCACATTCACAGCGCCTCTCTCGCAAGGGTTTGGATATGGCATCATCATTGGTCTGGGC TTTGCCTTTGCCCTGCTTATGATCTTTATCACCTGGGCTCTGAAGAGGTATGTAGTCTAATACCATTTCAACCAT GGCCTTTGGCCCCTTCAAGCTTTGGAGTCTAGCGAGGCTTACGGTTTTTGTGTAGATACCAAAATGAAGTGCAGA CATCGGAAATGTTCTCAACGGCTGGAAGATCAGTCAAGTCGGGCTTGGTTGCCGCGGCAGTTGTCAGTAGTTGGA CATGGGCTGCAACTCTTCTTCAGTCGACTACTGTGGCTTACGAGTACGGCATCTCGGGTCCTTTCTTCTATGCAT CAGGTACTTACAGCCAGCAACAATACGGTCAATATCATTCTAATTCGGTGATACAGGTGCTACGGTCCAGATCAT CTTGTTCGCTACACTGGCCATCGAGCTCAAGCGGAGGGCTCCAAATGCGCATACCTTCCTCGAAGCTCTCCGTGC TCGATACGGAACCGTTGTTCATGTTGTTTTCATCGTTTTCTGCCTGATGACCAACATTCTCGTTACTGCCATGCT GCTTACCGGTGGTTCTGCCGTCCTGACGTCTCTCACGGGGGTTAATACAGTTGCTGCCTGTTTCCTCCTGCCAAT TGGTGTCGTGCTCTACACCCTGTTTGGTGGTATAAAGGCAACATTCATCACGGACTATTTGCATACCGTCGTGAT TATTGTCGTCATCTTCATCTTTGCATTCTCTGCCTACGCGACTAGCGACAAGCTTGGCTCCCCTGGAGCTGTCTA TGATGCACTAGTAGCAGCATCGAAGCTCCACCCAGTTGACGGCAATGCAGAGGGAAGCTATCTGACCATGAGGTC GAAGGAGGGTGGCATCTTCTGGATTATCAACCTGGTCGGCAACTTTGGGTATGCCAACCACCACACTCCCGTATA AATTGCTTGCTAACGAACCCCATCAGTACTGTCTTCCTCGACAACGGATACTACAACAAAGCTATTGCCGCAAGC CCCGTGCACGCTTTCCCCGGATATGTCATTGGTGGTCTTTGCTGGTTCGCAATCCCTTGGTTGTGCGCCAGCACT CTGGGCATGACTGCTCTCTCTCTGGAGGGCACTCAGCGCTTGAGCCCCGACGACGTCACAGCCGGTCTTGTCCTG CCCTTTGCCGCCGTCAAGCTTCTCGGCTACAGCGGCGCAGTATGCACAACAATCATGATCTTCATGGCAGTCACC TCCGCTTTCTCTGCCCAGCTGATTGCTGTCTCATCCATCTTCACCTACGATATCTACCAGGCCTACATCGACCCA TCCGCCAAGGGCAAGCGTCTCGTCTGGGTTTCGCACATGACCTGTGTGTTCTGGGCCATCGCCATGGCCGGCTTC TCCACCGGTCTCTACTACGCTGGTATCGGAATGGGCTACCTCTACCTGCTGATGGGCGTGATCATCTCCTCTGCA GTCTTCCCCGGCGCCATGTCCCTCATCTGGAAGCACCAGAACTGGATCGCAGCAGCCGCCTCGCCACCCCTCGGC CTTGCAGTCTCCCTTATCGCCTGGCTCGTGACAACCAAGAAACAATACGGCATATTAACCGTCACCACAACCGGC GCAAAGTGAGTCCATCCCCACACCTTCTCTCCTCAAACAATCAACTAACATAGTTAAAAGCTACCCAATGCTCGC CGGTAACGTCGCCGCCCTCCTGAGCCCCGTGATCTTCTCCCCGATCCTCACCCTCATCTTCGGCTCTCAAAACTA CGACTACGGCACCATGCGCGCCATTCGCCGCGTCGACGACGCCGACGTAGCAGCAGCCGCTCACATCGACATCGA ACTCATCCCCGGCGAAATCAACACCCAGTCCGCCGCCCAGGAGGAAGAAGAAACACGCAAACTCAACCGCGCCGC TCTCTACTCCCGCACCTTGACCATCTTCATGGTCCTCTGCTTCCTCATTCTCTGGCCCATCCCTATGTATGGCAG CTCGTATGTCTTCAGCAAGAAGTTCTTTACGGGTTGGGTCGTTGTCGGTCTGATTTGGCTTTTCTGCACGACTTT CGGGGTGGTCATTTTCCCGTTGTATGAGGGTCGGGAGAGTATTGTGAGGACGGTGAGGATGATGGCGTTGGATAT TATGGGGAAGAGGGGAAGGAGAAAGGGCATGATTGTTGGGGAGATGACGAGTGGGGATGTTTCGGGAGTGCAGAC GCCTGTGCTTGAGAAGAAGGAGGTTTTGGAGAAGTAG |