© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6950.t1 |
| Gene name | |
| Location | scaffold_046:14049..15507 |
| Strand | + |
| Gene length (bp) | 1458 |
| Transcript length (bp) | 1035 |
| Coding sequence length (bp) | 1035 |
| Protein length (aa) | 345 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12799 | LRR_4 | Leucine Rich repeats (2 copies) | 4.4E-06 | 166 | 205 |
| PF12799 | LRR_4 | Leucine Rich repeats (2 copies) | 4.8E-10 | 211 | 251 |
| PF12799 | LRR_4 | Leucine Rich repeats (2 copies) | 9.3E-08 | 254 | 293 |
| PF13516 | LRR_6 | Leucine Rich repeat | 5.3E-01 | 123 | 134 |
| PF13516 | LRR_6 | Leucine Rich repeat | 1.5E+00 | 232 | 246 |
| PF13516 | LRR_6 | Leucine Rich repeat | 1.6E+00 | 253 | 267 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6950.t1 MKDKNGWDGKLRVEPKATITNPEALEDPDYSDSDAPPVEEIEADEDLLEDEDPDAEEIDLVHCRITSIPALRLER FPKVKRLCFRQNQISRIEFPTEVAKSLTELDLYDNLISHVKGLDEFENLTSLDLSFNKIKHVKNISHLVKLTDLY FVQNKISKIEGVETFTSLRNLELGANRIREIENLDNLKALEELWLGKNKITELKNLDGLSNLRILSIQSNRLTKI SGLANLKNLEELYVSHNAITDLSGLEENTSLRVLDFSNNQVSKLEHLSHLKNLVELWASNNQLSSFDEVERELRD KENLQTVYFEGNPLQTRAPALYRNKVRLAIPHIMQVDATYIRVV* |
| Coding | >Ani_SJS100_1|g6950.t1 ATGAAGGACAAGAACGGCTGGGATGGAAAGCTACGGGTCGAACCCAAAGCGACGATCACGAACCCGGAAGCGCTA GAAGACCCCGATTACTCGGACTCGGATGCGCCGCCTGTGGAGGAGATCGAGGCCGATGAGGATCTATTGGAGGAT GAGGACCCGGACGCAGAGGAAATCGACCTTGTTCACTGTCGCATAACTTCGATTCCGGCGTTGCGATTGGAGCGG TTTCCCAAGGTGAAGAGACTATGCTTCCGACAGAACCAAATCTCGCGAATCGAATTCCCCACGGAAGTTGCCAAA TCGTTGACGGAACTCGATCTCTACGATAACCTTATATCGCATGTGAAGGGGCTTGATGAGTTCGAGAACCTGACC AGCTTGGATCTCAGCTTCAATAAAATTAAACATGTCAAGAATATTTCGCATTTGGTCAAGTTGACCGATCTGTAC TTTGTGCAGAATAAGATCTCGAAGATAGAGGGGGTGGAGACGTTTACGTCGTTGCGTAATTTGGAGTTGGGGGCG AATAGGATCCGGGAAATTGAGAATCTGGATAATTTGAAGGCATTGGAAGAGTTGTGGTTGGGGAAGAATAAGATT ACGGAATTGAAGAATCTCGATGGCCTCTCCAACCTGCGCATTCTCTCCATCCAGTCGAACCGTCTCACGAAAATC AGTGGGCTCGCGAACCTGAAGAACCTGGAGGAACTCTACGTGTCTCATAATGCGATCACCGACCTCAGCGGTCTC GAGGAGAACACTTCGCTGCGCGTGCTAGACTTTTCCAACAACCAAGTGTCCAAGCTGGAACATTTGTCTCATTTG AAGAATCTGGTGGAGCTGTGGGCGTCCAACAATCAACTGTCGAGCTTCGATGAAGTGGAACGCGAACTCCGGGAC AAGGAGAATCTCCAGACGGTGTACTTTGAGGGCAACCCGCTGCAGACGAGAGCGCCAGCATTGTATCGGAATAAG GTGCGGTTGGCGATACCGCATATCATGCAGGTTGACGCGACGTATATCCGCGTCGTGTAA |
| Transcript | >Ani_SJS100_1|g6950.t1 ATGAAGGACAAGAACGGCTGGGATGGAAAGCTACGGGTCGAACCCAAAGCGACGATCACGAACCCGGAAGCGCTA GAAGACCCCGATTACTCGGACTCGGATGCGCCGCCTGTGGAGGAGATCGAGGCCGATGAGGATCTATTGGAGGAT GAGGACCCGGACGCAGAGGAAATCGACCTTGTTCACTGTCGCATAACTTCGATTCCGGCGTTGCGATTGGAGCGG TTTCCCAAGGTGAAGAGACTATGCTTCCGACAGAACCAAATCTCGCGAATCGAATTCCCCACGGAAGTTGCCAAA TCGTTGACGGAACTCGATCTCTACGATAACCTTATATCGCATGTGAAGGGGCTTGATGAGTTCGAGAACCTGACC AGCTTGGATCTCAGCTTCAATAAAATTAAACATGTCAAGAATATTTCGCATTTGGTCAAGTTGACCGATCTGTAC TTTGTGCAGAATAAGATCTCGAAGATAGAGGGGGTGGAGACGTTTACGTCGTTGCGTAATTTGGAGTTGGGGGCG AATAGGATCCGGGAAATTGAGAATCTGGATAATTTGAAGGCATTGGAAGAGTTGTGGTTGGGGAAGAATAAGATT ACGGAATTGAAGAATCTCGATGGCCTCTCCAACCTGCGCATTCTCTCCATCCAGTCGAACCGTCTCACGAAAATC AGTGGGCTCGCGAACCTGAAGAACCTGGAGGAACTCTACGTGTCTCATAATGCGATCACCGACCTCAGCGGTCTC GAGGAGAACACTTCGCTGCGCGTGCTAGACTTTTCCAACAACCAAGTGTCCAAGCTGGAACATTTGTCTCATTTG AAGAATCTGGTGGAGCTGTGGGCGTCCAACAATCAACTGTCGAGCTTCGATGAAGTGGAACGCGAACTCCGGGAC AAGGAGAATCTCCAGACGGTGTACTTTGAGGGCAACCCGCTGCAGACGAGAGCGCCAGCATTGTATCGGAATAAG GTGCGGTTGGCGATACCGCATATCATGCAGGTTGACGCGACGTATATCCGCGTCGTGTAA |
| Gene | >Ani_SJS100_1|g6950.t1 ATGAAGGACAAGAACGGCTGGGATGGAAAGCTACGGGTCGAACCCAAAGCGACGATCACGAACCCGGAAGCGCTA GAAGACCCCGATTACTCGGACTCGGATGCGCCGCCTGTGGAGGAGATCGAGGCCGATGAGGGTATGTCCATCATT GCCCATATATACCGGGATGCTGTGAACTGGTATAACGGTAACGCGAGAGAAAATATACTGATAGTGGGTTTCGTA TTTAGATCTATTGGAGGATGAGGACCCGGACGCAGAGGTATACGCTGATACTTCATCCGACGCGACGCGTTGGTT GATGGACACAACCAGCTAGCTAACACATCTCACATCAGGAAATCGACCTTGTTCACTGTCGCATAACTTCGATTC CGGCGTTGCGATTGGAGCGGTTTCCCAAGGTGAAGGTATGGCAGGAGTGCCCGGCATGTGTGTGGCCGCGCGACC CAGTGCTAATAGAACGGTGAATGGTATAGAGACTATGCTTCCGACAGAACCAAATCTCGCGAATCGAATTCCCCA CGGAAGTTGCCAAATCGTTGACGGAACTCGATCTCTACGATAACCTTATATCGCATGTGAAGGGGCTTGATGAGT TCGAGAACCTGACCAGCTTGGATCTCAGCTTCAATAAAATTAAACATGTCAAGAATATTTCGCATTTGGTCAAGT TGACCGATCTGTACTTTGTGCAGAATAAGATCTCGAAGATAGAGGGGGTGGAGACGTTTACGTCGTTGCGTAATT TGGAGTTGGGGGCGAATAGGATCCGGGTGGGTCTTGAATGTGCTTCAAGTGATGATTGGGGTATTGTTCTGACTG GTTGCAGGAAATTGAGAATCTGGATAATTTGAAGGCATTGGAAGAGTTGTGGTTGGGGAAGAATAAGATTACGGA ATTGAAGGTCCGTGGATTGCATTGTGATTCTTAGGTGTGATATGCGTTGGCTGACTGACCGGGGTGATGATATAG AATCTCGATGGCCTCTCCAACCTGCGCATTCTCTCCATCCAGTCGAACCGTCTCACGAAAATCAGTGGGCTCGCG AACCTGAAGAACCTGGAGGAACTCTACGTGTCTCATAATGCGATCACCGACCTCAGCGGTCTCGAGGAGAACACT TCGCTGCGCGTGCTAGACTTTTCCAACAACCAAGTGTCCAAGCTGGAACATTTGTCTCATTTGAAGAATCTGGTG GAGCTGTGGGCGTCCAACAATCAACTGTCGAGCTTCGATGAAGTGGAACGCGAACTCCGGGACAAGGAGAATCTC CAGACGGTGTACTTTGAGGGCAACCCGCTGCAGACGAGAGCGCCAGCATTGTATCGGAATAAGGTGCGGTTGGCG ATACCGCATATCATGCAGGTTGACGCGAGTAAGTCCTATCGTCTATATCTACTAATGCTTACGGAGATACTAACA AAACCCAATGTAGCGTATATCCGCGTCGTGTAA |