Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g6940.t1
Gene name
Locationscaffold_045:257169..257585
Strand+
Gene length (bp)416
Transcript length (bp)288
Coding sequence length (bp)288
Protein length (aa) 96

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 4.1E-14 29 92

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 27 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g6940.t1
MTGRGGGGAARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRMATKSEEEKR
RPLGQILLKGDNVSLIQAVQ*
Coding >Ani_SJS100_1|g6940.t1
ATGACCGGTCGTGGAGGCGGTGGAGCCGCTCGCAAGACCCTGCTTGCGCCGATTCATTTCATCTTCAAGCTCCTT
CAGCAACGGTCTACAGTCTCTATCTGGCTTTACGAGCAGCTTGCTTTCCGCATAGAGGGAAAAATCAGGGGTTTT
GACGAGTTCATGAACCTTGTCATTGACGATGCAGTGGAGGTTCGCATGGCTACAAAGTCCGAAGAAGAGAAGCGG
AGACCTCTAGGCCAAATACTGCTCAAGGGCGATAACGTGTCTCTTATTCAAGCCGTGCAGTGA
Transcript >Ani_SJS100_1|g6940.t1
ATGACCGGTCGTGGAGGCGGTGGAGCCGCTCGCAAGACCCTGCTTGCGCCGATTCATTTCATCTTCAAGCTCCTT
CAGCAACGGTCTACAGTCTCTATCTGGCTTTACGAGCAGCTTGCTTTCCGCATAGAGGGAAAAATCAGGGGTTTT
GACGAGTTCATGAACCTTGTCATTGACGATGCAGTGGAGGTTCGCATGGCTACAAAGTCCGAAGAAGAGAAGCGG
AGACCTCTAGGCCAAATACTGCTCAAGGGCGATAACGTGTCTCTTATTCAAGCCGTGCAGTGA
Gene >Ani_SJS100_1|g6940.t1
ATGACCGGTCGTGGAGGCGGTGGAGCCGCTCGCAAGACCCTGCTTGCGCCGATTCATTTCATCTTCAAGCTCCTT
CAGCAACGGTCTACAGTCTCTATCTGGCTTTACGAGCAGCTTGCTTTCCGCATAGAGGGAAAAATCAGGGTAAAT
GGATTTCTGGCGACTTGGTTGCGTGACATTTGACTAATCGACTCGTGTAGGGTTTTGACGAGTTCATGAACCTTG
TCATTGACGATGCAGTGGAGGTTCGCATGGCTACAAAGTCCGAAGAAGAGAAGCGGAGACCTCTAGGTATGCGGC
AGTTCAAGCTCTTGTTCATTCCCCTGGGCGCTGCAATACTGATTATATTCTTGAACAACCTAGGCCAAATACTGC
TCAAGGGCGATAACGTGTCTCTTATTCAAGCCGTGCAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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