© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6894.t1 |
| Gene name | |
| Location | scaffold_045:118171..119129 |
| Strand | + |
| Gene length (bp) | 958 |
| Transcript length (bp) | 732 |
| Coding sequence length (bp) | 732 |
| Protein length (aa) | 244 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12352 | V-SNARE_C | Snare region anchored in the vesicle membrane C-terminus | 1.3E-14 | 155 | 216 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 222 | 241 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6894.t1 MNSLFNSALKQSSAIRRDLETFSQSPATSSAALQGQIAASLASLSRTVDDYSALSKKELIPEKQEKAFERVKNFR SELADYRQHFDRLRKEREEAQSVTNRNELLGRRPHHTATPENPYAQSSLPQSSAFGPSSSRSGLSFGASPADYNR ETHALREQSFLASTNTQIDEFLDRGRAVLADLGQQREVLKGTQRRLYSVANTLGVSGDTIRKVERRARQDKWIFW GGVVLFFLFCWAVLHFLR* |
| Coding | >Ani_SJS100_1|g6894.t1 ATGAATTCCCTCTTCAATTCCGCCCTCAAGCAGTCATCTGCTATCCGCCGTGACCTGGAAACCTTTTCCCAATCT CCAGCTACCTCATCTGCCGCACTACAAGGCCAAATCGCTGCATCGCTAGCATCGTTATCGCGCACCGTTGACGAC TACTCTGCCCTGTCCAAGAAGGAATTGATTCCGGAGAAGCAAGAGAAGGCATTCGAACGAGTCAAGAATTTCCGA TCAGAACTGGCAGATTACCGGCAACACTTTGATCGACTACGGAAAGAACGAGAGGAAGCTCAATCCGTCACCAAC CGCAATGAGCTCCTCGGTCGACGTCCCCATCACACAGCTACACCAGAGAACCCATATGCTCAATCATCCCTCCCC CAGTCCTCTGCGTTCGGCCCTTCTTCGTCACGATCGGGGCTCAGCTTTGGAGCCTCGCCAGCCGACTACAACCGG GAAACACATGCGCTTCGCGAACAAAGCTTCCTAGCGAGCACCAACACCCAGATTGATGAGTTTCTTGATCGGGGT CGTGCTGTGCTTGCGGATCTGGGACAGCAGCGTGAAGTACTGAAGGGCACACAACGTCGACTCTACAGCGTTGCA AACACACTGGGCGTCAGCGGCGACACAATCCGCAAGGTTGAGCGCCGCGCAAGACAAGACAAGTGGATCTTCTGG GGTGGTGTAGTCCTATTCTTCCTGTTCTGCTGGGCTGTCCTGCACTTCTTGCGATAG |
| Transcript | >Ani_SJS100_1|g6894.t1 ATGAATTCCCTCTTCAATTCCGCCCTCAAGCAGTCATCTGCTATCCGCCGTGACCTGGAAACCTTTTCCCAATCT CCAGCTACCTCATCTGCCGCACTACAAGGCCAAATCGCTGCATCGCTAGCATCGTTATCGCGCACCGTTGACGAC TACTCTGCCCTGTCCAAGAAGGAATTGATTCCGGAGAAGCAAGAGAAGGCATTCGAACGAGTCAAGAATTTCCGA TCAGAACTGGCAGATTACCGGCAACACTTTGATCGACTACGGAAAGAACGAGAGGAAGCTCAATCCGTCACCAAC CGCAATGAGCTCCTCGGTCGACGTCCCCATCACACAGCTACACCAGAGAACCCATATGCTCAATCATCCCTCCCC CAGTCCTCTGCGTTCGGCCCTTCTTCGTCACGATCGGGGCTCAGCTTTGGAGCCTCGCCAGCCGACTACAACCGG GAAACACATGCGCTTCGCGAACAAAGCTTCCTAGCGAGCACCAACACCCAGATTGATGAGTTTCTTGATCGGGGT CGTGCTGTGCTTGCGGATCTGGGACAGCAGCGTGAAGTACTGAAGGGCACACAACGTCGACTCTACAGCGTTGCA AACACACTGGGCGTCAGCGGCGACACAATCCGCAAGGTTGAGCGCCGCGCAAGACAAGACAAGTGGATCTTCTGG GGTGGTGTAGTCCTATTCTTCCTGTTCTGCTGGGCTGTCCTGCACTTCTTGCGATAG |
| Gene | >Ani_SJS100_1|g6894.t1 ATGGTAAGTCGTCTAAGGCCTCAAAAGTGAAGCCTCGCTTTGAGGGGGTTGATTGCCATGCCTGATGGGTGCTTA CATTGTCTATTGCTTAGAATTCCCTCTTCAATTCCGCCCTCAAGCAGTCATCTGCTATCCGCCGTGACCTGGAAA CCTTTTCCCAATCTCCAGCTACCTCATCTGCCGCACTACAAGGTAGGTTTCGAAACCGGTGCTTGTAGTGGCTCC ACTACGCAACAGAAGGAAGCTCATGCGCATTGTAGGCCAAATCGCTGCATCGCTAGCATCGTTATCGCGCACCGT TGACGACTACTCTGCCCTGTCCAAGAAGGAATTGATTCCGGAGAAGCAAGAGAAGGCATTCGAACGAGTCAAGAA TTTCCGATCAGAACTGGCAGATTACCGGCAACACTTTGATCGACTACGGAAAGAACGAGAGGAAGCTGTAAGAAT TTGCACTCAAATCTTCAAGCAGCGTTGAGACTCGATATGGCTGACCATGGTTTATCTATAGCAATCCGTCACCAA CCGCAATGAGCTCCTCGGTCGACGTCCCCATCACACAGCTACACCAGAGAACCCATATGCTCAATCATCCCTCCC CCAGTCCTCTGCGTTCGGCCCTTCTTCGTCACGATCGGGGCTCAGCTTTGGAGCCTCGCCAGCCGACTACAACCG GGAAACACATGCGCTTCGCGAACAAAGCTTCCTAGCGAGCACCAACACCCAGATTGATGAGTTTCTTGATCGGGG TCGTGCTGTGCTTGCGGATCTGGGACAGCAGCGTGAAGTACTGAAGGGCACACAACGTCGACTCTACAGCGTTGC AAACACACTGGGCGTCAGCGGCGACACAATCCGCAAGGTTGAGCGCCGCGCAAGACAAGACAAGTGGATCTTCTG GGGTGGTGTAGTCCTATTCTTCCTGTTCTGCTGGGCTGTCCTGCACTTCTTGCGATAG |