© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6780.t1 |
| Gene name | |
| Location | scaffold_043:244250..245132 |
| Strand | - |
| Gene length (bp) | 882 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12937 | F-box-like | F-box-like | 3.0E-07 | 10 | 54 |
| PF00646 | F-box | F-box domain | 2.4E-04 | 11 | 43 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6780.t1 MHTFSGPNPIPTEVIINIFGELSLPDALHLAATCRRLRQVLSEHTPTIYKRLRRKIPCERYARVLLADQGDLALY SSSVTIRDLLRLRRNSRMVEKAIEVFDRDITPNIRIPLTSIDDEFYGGKPRPLHLLPSERHRFTRSYYQFWSLSL LDRPSRQQRYQRMLLKHLYMVYEMVDLNQPIGDELVSFFADEKRCELSQELTDYLHYLYHDIHGVDYIDFSGHSI SMRTRGHAAIWDHCQPDFKKIVCYQWRDPEKKPVKEEEVWEHTTDEE* |
| Coding | >Ani_SJS100_1|g6780.t1 ATGCATACATTCTCAGGACCAAACCCCATTCCTACCGAGGTCATCATCAACATATTCGGGGAACTTTCTCTCCCG GATGCGCTCCACTTGGCCGCGACTTGCCGTCGGCTGCGCCAGGTCTTGAGTGAACATACGCCTACCATTTACAAA CGCCTACGCAGAAAGATCCCATGTGAGCGCTATGCAAGAGTCCTACTAGCAGATCAAGGAGACCTGGCACTTTAT TCTTCTTCAGTGACTATTCGGGATCTTTTACGATTGAGACGCAACTCTCGTATGGTGGAGAAAGCAATCGAGGTG TTTGATCGTGATATTACCCCAAACATTCGGATCCCTCTCACGAGCATCGATGACGAATTCTACGGAGGAAAACCA CGTCCGTTGCATTTACTTCCGTCAGAACGTCATCGGTTCACTCGAAGCTACTACCAATTTTGGAGTCTTTCACTT CTCGATCGACCATCTCGACAACAGCGATATCAGAGGATGTTGCTCAAGCATCTATACATGGTATATGAAATGGTT GATCTGAACCAGCCAATTGGCGACGAATTGGTATCTTTCTTTGCTGATGAGAAACGATGCGAACTCTCTCAAGAA CTGACCGACTATCTCCATTATCTCTACCATGACATTCATGGAGTTGACTACATCGATTTCTCGGGGCACAGCATT TCTATGCGTACGCGAGGTCATGCAGCTATATGGGATCATTGCCAGCCTGATTTCAAGAAAATCGTTTGCTACCAG TGGCGAGATCCAGAGAAGAAACCTGTCAAGGAGGAAGAGGTGTGGGAGCATACAACTGATGAGGAATGA |
| Transcript | >Ani_SJS100_1|g6780.t1 ATGCATACATTCTCAGGACCAAACCCCATTCCTACCGAGGTCATCATCAACATATTCGGGGAACTTTCTCTCCCG GATGCGCTCCACTTGGCCGCGACTTGCCGTCGGCTGCGCCAGGTCTTGAGTGAACATACGCCTACCATTTACAAA CGCCTACGCAGAAAGATCCCATGTGAGCGCTATGCAAGAGTCCTACTAGCAGATCAAGGAGACCTGGCACTTTAT TCTTCTTCAGTGACTATTCGGGATCTTTTACGATTGAGACGCAACTCTCGTATGGTGGAGAAAGCAATCGAGGTG TTTGATCGTGATATTACCCCAAACATTCGGATCCCTCTCACGAGCATCGATGACGAATTCTACGGAGGAAAACCA CGTCCGTTGCATTTACTTCCGTCAGAACGTCATCGGTTCACTCGAAGCTACTACCAATTTTGGAGTCTTTCACTT CTCGATCGACCATCTCGACAACAGCGATATCAGAGGATGTTGCTCAAGCATCTATACATGGTATATGAAATGGTT GATCTGAACCAGCCAATTGGCGACGAATTGGTATCTTTCTTTGCTGATGAGAAACGATGCGAACTCTCTCAAGAA CTGACCGACTATCTCCATTATCTCTACCATGACATTCATGGAGTTGACTACATCGATTTCTCGGGGCACAGCATT TCTATGCGTACGCGAGGTCATGCAGCTATATGGGATCATTGCCAGCCTGATTTCAAGAAAATCGTTTGCTACCAG TGGCGAGATCCAGAGAAGAAACCTGTCAAGGAGGAAGAGGTGTGGGAGCATACAACTGATGAGGAATGA |
| Gene | >Ani_SJS100_1|g6780.t1 ATGCATACATTCTCAGGACCAAACCCCATTCCTACCGAGGTCATCATCAACATATTCGGGGAACTTTCTCTCCCG GATGCGCTCCACTTGGCCGCGACTTGCCGTCGGCTGCGCCAGGTCTTGAGTGAACATACGCCTACCATTTACAAA CGCCTACGCAGAAAGATCCCATGTGAGCGCTATGCAAGAGTCCTACTAGCAGATCAAGGAGACCTGGCACTTTAT TCTTCTTCAGTGACTATTCGGGATCTTTTACGATTGAGACGCAACTCTCGTATGGTGGAGAAAGCAATCGAGGTG TTTGATCGTGATATTACCCCAAACATTCGGAGTGAGTAGACAGATCAGTAAGCAGTCACATAAATAGATATTTGC TAAATTATATATTATACAGTCCCTCTCACGAGCATCGATGACGAATTCTACGGAGGAAAACCACGTCCGTTGCAT TTACTTCCGTCAGAACGTCATCGGTTCACTCGAAGCTACTACCAATTTTGGAGTCTTTCACTTCTCGATCGACCA TCTCGACAACAGCGATATCAGAGGATGTTGCTCAAGCATCTATACATGGTATATGAAATGGTTGATCTGAACCAG CCAATTGGCGACGAATTGGTATCTTTCTTTGCTGATGAGAAACGATGCGAACTCTCTCAAGAACTGACCGACTAT CTCCATTATCTCTACCATGACATTCATGGAGTTGACTACATCGATTTCTCGGGGCACAGCATTTCTATGCGTACG CGAGGTCATGCAGCTATATGGGATCATTGCCAGCCTGATTTCAAGAAAATCGTTTGCTACCAGTGGCGAGATCCA GAGAAGAAACCTGTCAAGGAGGAAGAGGTGTGGGAGCATACAACTGATGAGGAATGA |