© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6712.t1 |
| Gene name | |
| Location | scaffold_043:8030..9742 |
| Strand | + |
| Gene length (bp) | 1712 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1437 |
| Protein length (aa) | 479 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00344 | SecY | SecY | 6.6E-73 | 76 | 457 |
| PF10559 | Plug_translocon | Plug domain of Sec61p | 1.6E-16 | 41 | 75 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0015031 | protein transport | Yes |
| GO:0071705 | nitrogen compound transport | No |
| GO:0008104 | protein localization | No |
| GO:0071702 | organic substance transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0033036 | macromolecule localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0009987 | cellular process | No |
| GO:0051641 | cellular localization | No |
| GO:0006810 | transport | No |
| GO:0070727 | cellular macromolecule localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 33 | 55 | 22 |
| 2 | 75 | 97 | 22 |
| 3 | 118 | 140 | 22 |
| 4 | 145 | 167 | 22 |
| 5 | 174 | 195 | 21 |
| 6 | 241 | 263 | 22 |
| 7 | 284 | 306 | 22 |
| 8 | 354 | 376 | 22 |
| 9 | 416 | 433 | 17 |
| 10 | 437 | 459 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6712.t1 MSGLRFLDLIKPFTPLLPEVAAPETKVPFNQKLMWTGLTLLIFLVMSQMPLYGIVSSDTSDPLYWLRMMLASNRG TLMELGITPIISSGMVFQLLAGTHLIDVNLDLKTDRELYQTAQKLFAIILSFGQACVYVLTGLYGQPSDLGAGIC VLLIVQLVVAGLVVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGPEFEGAIIALFHLLLTW SDKQRALREAFYRQNLPNIMNLLATLLVFAAVIYLQGFRVEIPVKSSRQRGMRGSYPVRLFYTSNMPIMLQSALC SNIFLISQMLYSRFSDNLLVKLLGVWEPREGSAQLHAASGIAYYMSPPLNFKEALLDPIHTAVYITFMLVACALF SKTWIEVSGSAPRDVAKQLKDQGLVMAGHREQSMYKELKRVIPTAAAFGGACIGALSVASDLLGALGSGTGILLA VTIIYGYFEIAAREGDIGSGLKGLVPGN* |
| Coding | >Ani_SJS100_1|g6712.t1 ATGAGCGGACTCCGGTTTCTCGATCTCATCAAGCCCTTCACGCCCCTCCTCCCGGAGGTGGCCGCCCCGGAAACC AAGGTTCCCTTCAACCAGAAGTTGATGTGGACGGGGTTGACCCTATTGATCTTCCTGGTCATGAGCCAGATGCCC TTGTACGGAATTGTCTCCTCTGACACCTCCGACCCTCTGTACTGGCTCCGTATGATGTTGGCCAGTAACCGGGGT ACCCTGATGGAACTGGGTATCACCCCCATCATCTCCTCTGGCATGGTTTTCCAGCTTCTCGCTGGTACCCACCTC ATCGATGTCAACCTGGACCTGAAGACCGACCGTGAACTGTATCAGACCGCTCAGAAGCTCTTCGCTATCATCCTG TCCTTCGGTCAGGCCTGCGTCTACGTCCTCACTGGTCTTTACGGCCAGCCCAGTGACCTTGGTGCCGGTATCTGT GTTCTGCTGATTGTTCAGCTGGTCGTTGCTGGCTTGGTTGTCATCCTGCTGGATGAGCTGCTCCAGAAGGGCTAT GGTCTTGGTAGCGGTATCTCTCTGTTCATCGCGACCAACATCTGCGAGTCGATCGTCTGGAAGGCTTTCTCTCCT ACGACCATCAACACTGGCCGTGGTCCCGAGTTTGAGGGTGCCATCATTGCCCTCTTCCACCTTCTGTTGACCTGG TCCGACAAGCAACGCGCTCTCCGCGAGGCTTTCTACCGCCAGAACCTCCCCAACATCATGAACCTGCTGGCTACT CTCCTCGTTTTCGCCGCTGTGATCTACCTCCAGGGCTTCCGTGTTGAGATCCCTGTCAAGTCCTCCCGCCAGCGT GGCATGCGTGGTTCCTACCCTGTTCGCCTGTTCTACACCTCCAACATGCCCATCATGCTTCAGTCTGCTCTGTGC TCCAACATCTTCCTCATCAGTCAGATGCTGTACTCTCGCTTCTCTGACAACCTCCTTGTCAAGCTTCTCGGTGTT TGGGAGCCTCGTGAGGGTTCTGCCCAGCTCCACGCCGCCTCCGGCATTGCCTACTACATGTCTCCTCCCCTGAAC TTCAAGGAGGCCCTTCTTGACCCCATTCACACCGCCGTTTACATCACCTTCATGCTGGTTGCTTGTGCTCTCTTC TCCAAGACCTGGATTGAGGTTTCCGGCTCTGCTCCCCGCGATGTTGCCAAGCAGCTCAAGGACCAGGGTCTCGTG ATGGCTGGTCACCGTGAGCAGAGCATGTACAAGGAGCTCAAGCGCGTCATCCCTACTGCTGCTGCTTTCGGTGGT GCCTGCATTGGTGCCCTGTCCGTCGCTTCTGACCTGCTTGGTGCTCTTGGCAGCGGTACTGGTATCCTCCTTGCC GTTACGATTATATACGGATACTTTGAAATTGCCGCCCGTGAGGGCGACATTGGATCGGGCCTCAAGGGCCTTGTT CCGGGTAACTAG |
| Transcript | >Ani_SJS100_1|g6712.t1 ATGAGCGGACTCCGGTTTCTCGATCTCATCAAGCCCTTCACGCCCCTCCTCCCGGAGGTGGCCGCCCCGGAAACC AAGGTTCCCTTCAACCAGAAGTTGATGTGGACGGGGTTGACCCTATTGATCTTCCTGGTCATGAGCCAGATGCCC TTGTACGGAATTGTCTCCTCTGACACCTCCGACCCTCTGTACTGGCTCCGTATGATGTTGGCCAGTAACCGGGGT ACCCTGATGGAACTGGGTATCACCCCCATCATCTCCTCTGGCATGGTTTTCCAGCTTCTCGCTGGTACCCACCTC ATCGATGTCAACCTGGACCTGAAGACCGACCGTGAACTGTATCAGACCGCTCAGAAGCTCTTCGCTATCATCCTG TCCTTCGGTCAGGCCTGCGTCTACGTCCTCACTGGTCTTTACGGCCAGCCCAGTGACCTTGGTGCCGGTATCTGT GTTCTGCTGATTGTTCAGCTGGTCGTTGCTGGCTTGGTTGTCATCCTGCTGGATGAGCTGCTCCAGAAGGGCTAT GGTCTTGGTAGCGGTATCTCTCTGTTCATCGCGACCAACATCTGCGAGTCGATCGTCTGGAAGGCTTTCTCTCCT ACGACCATCAACACTGGCCGTGGTCCCGAGTTTGAGGGTGCCATCATTGCCCTCTTCCACCTTCTGTTGACCTGG TCCGACAAGCAACGCGCTCTCCGCGAGGCTTTCTACCGCCAGAACCTCCCCAACATCATGAACCTGCTGGCTACT CTCCTCGTTTTCGCCGCTGTGATCTACCTCCAGGGCTTCCGTGTTGAGATCCCTGTCAAGTCCTCCCGCCAGCGT GGCATGCGTGGTTCCTACCCTGTTCGCCTGTTCTACACCTCCAACATGCCCATCATGCTTCAGTCTGCTCTGTGC TCCAACATCTTCCTCATCAGTCAGATGCTGTACTCTCGCTTCTCTGACAACCTCCTTGTCAAGCTTCTCGGTGTT TGGGAGCCTCGTGAGGGTTCTGCCCAGCTCCACGCCGCCTCCGGCATTGCCTACTACATGTCTCCTCCCCTGAAC TTCAAGGAGGCCCTTCTTGACCCCATTCACACCGCCGTTTACATCACCTTCATGCTGGTTGCTTGTGCTCTCTTC TCCAAGACCTGGATTGAGGTTTCCGGCTCTGCTCCCCGCGATGTTGCCAAGCAGCTCAAGGACCAGGGTCTCGTG ATGGCTGGTCACCGTGAGCAGAGCATGTACAAGGAGCTCAAGCGCGTCATCCCTACTGCTGCTGCTTTCGGTGGT GCCTGCATTGGTGCCCTGTCCGTCGCTTCTGACCTGCTTGGTGCTCTTGGCAGCGGTACTGGTATCCTCCTTGCC GTTACGATTATATACGGATACTTTGAAATTGCCGCCCGTGAGGGCGACATTGGATCGGGCCTCAAGGGCCTTGTT CCGGGTAACTAG |
| Gene | >Ani_SJS100_1|g6712.t1 ATGAGCGGACGTGAGTCTTGCACGCGATCGCTGCCATCTCCGCGACAGCGTTCCATCCTTTACCTCAATGGATCA GCAAATGCTGATACTCGATTCTAGTCCGGTTTCTCGATCTCATCAAGCCCTTCACGCCCCTCCTCCCGGAGGTGG CCGCCCCGGAAACCAAGGTTCCCTTCAACCAGAAGTTGATGTGGACGGGGGTACGTGATACTTGTCCAGCTCGAC ATGAGCTTCTAAGCTAATGGATTACCCCTGCAGTTGACCCTATTGATCTTCCTGGTCATGAGCCAGATGCCCTTG TACGGAATTGTCTCCTCTGACACCTCCGACCCTCTGTACTGGCTCCGTATGATGTTGGCCAGTAACCGGGGTACC CTGATGGAACTGGGTATCACCCCCATCATCTCCTCTGGCATGGTTTTCCAGGTATGTAATGGGGAAATTGCAATC TGATCACGGATATCGGGCATTGCTAATATGTGGCTTTTGTCTGATAGCTTCTCGCTGGTACCCACCTCATCGATG TCAACCTGGACCTGAAGACCGACCGTGAACTGTATCAGACCGCTCAGAAGCTCTTCGCTATCATCCTGTCCTTCG GTCAGGCCTGCGTCTACGTCCTCACTGGTCTTTACGGCCAGCCCAGTGACCTTGGTGCCGGTATCTGTGTTCTGC TGATTGTTCAGCTGGTCGTTGCTGGCTTGGTTGTCATCCTGCTGGATGAGCTGCTCCAGAAGGGCTATGGTCTTG GTAGCGGTATCTCTCTGTTCATCGCGACCAACATCTGCGAGTCGATCGTCTGGAAGGCTTTCTCTCCTACGACCA TCAACACTGGCCGTGGTCCCGAGTTTGAGGGTGCCATCATTGCCCTCTTCCACCTTCTGTTGACCTGGTCCGACA AGCAACGCGCTCTCCGCGAGGCTTTCTACCGCCAGAACCTCCCCAACATCATGAACCTGCTGGCTACTCTCCTCG TTTTCGCCGCTGTGATCTACCTCCAGGGCTTCCGTGTTGAGATCCCTGTCAAGTCCTCCCGCCAGCGTGGCATGC GTGGTTCCTACCCTGTTCGCCTGTTCTACACCTCCAACATGCCCATCATGCTTCAGTCTGCTCTGTGCTCCAACA TCTTCCTCATCAGTCAGATGCTGTACTCTCGCTTCTCTGACAACCTCCTTGTCAAGCTTCTCGGTGTTTGGGAGC CTCGTGAGGGTTCTGCCCAGCTCCACGCCGCCTCCGGCATTGCCTACTACATGTCTCCTCCCCTGAACTTCAAGG AGGCCCTTCTTGACCCCATTCACACCGCCGTTTACATCACCTTCATGCTGGTTGCTTGTGCTCTCTTCTCCAAGA CCTGGATTGAGGTTTCCGGCTCTGCTCCCCGCGATGTTGCCAAGCAGCTCAAGGACCAGGGTCTCGTGATGGCTG GTCACCGTGAGCAGAGCATGTACAAGGAGCTCAAGCGCGTCATCCCTACTGCTGCTGCTTTCGGTGGTGCCTGCA TTGGTGCCCTGTCCGTCGCTTCTGACCTGCTTGGTGCTCTTGGCAGCGGTACTGGTATCCTCCTTGCCGTTACGT AAGTCTTCACTTTGGTCTCAGATTTTCTGAAGTGGATACTAACATTCAAATGCAGGATTATATACGGATACTTTG AAATTGCCGCCCGTGAGGGCGACATTGGATCGGGCCTCAAGGGCCTTGTTCCGGGTAACTAG |