© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6604.t1 |
| Gene name | |
| Location | scaffold_041:253835..254808 |
| Strand | + |
| Gene length (bp) | 973 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 861 |
| Protein length (aa) | 287 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 5.5E-70 | 44 | 254 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 39 | 61 | 22 |
| 3 | 76 | 98 | 22 |
| 4 | 118 | 140 | 22 |
| 5 | 150 | 172 | 22 |
| 6 | 197 | 214 | 17 |
| 7 | 229 | 251 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6604.t1 MAFTLYYYTPSAAAAGIFVVLFGISTVLHFLQLVRTRTWFMIPFFIGGILETIGYVGRLLSSLESPNYSTGSYAM QSALILIAPAFLAASIYMTLGRIIRMVQAEQYSVFRLNWVTKIFVAGDVLSFLMQASGAGLMVSNSSDPSTGEHI IIGGLFVQIIFFGFFIITALIFQMRLAKAPTGTSVDLSHIWRRHMNALYISSVLIFVRSIVRVVEYLQGYDGYLM KHEVFIYVFDALLMFLAMEILQFIHPSQVNCYLGRGDRYSDKVIKTQKFMSVPVEMEVSSV* |
| Coding | >Ani_SJS100_1|g6604.t1 ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTTG GAAACAATCGGATATGTTGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATG CAAAGCGCCCTTATTCTGATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGA ATGGTCCAAGCCGAACAGTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTT TCCTTTCTGATGCAAGCCTCTGGCGCTGGTCTCATGGTCAGCAACTCTAGCGACCCATCCACGGGCGAGCACATT ATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGGCTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGA CTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATCGCACATCTGGCGTCGCCACATGAACGCTCTTTACATC TCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGTGGTGGAGTACCTGCAGGGATATGACGGCTATCTCATG AAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCTGATGTTCCTGGCGATGGAGATACTCCAATTCATCCAT CCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCGTTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATG TCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA |
| Transcript | >Ani_SJS100_1|g6604.t1 ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTTG GAAACAATCGGATATGTTGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATG CAAAGCGCCCTTATTCTGATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGA ATGGTCCAAGCCGAACAGTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTT TCCTTTCTGATGCAAGCCTCTGGCGCTGGTCTCATGGTCAGCAACTCTAGCGACCCATCCACGGGCGAGCACATT ATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGGCTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGA CTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATCGCACATCTGGCGTCGCCACATGAACGCTCTTTACATC TCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGTGGTGGAGTACCTGCAGGGATATGACGGCTATCTCATG AAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCTGATGTTCCTGGCGATGGAGATACTCCAATTCATCCAT CCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCGTTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATG TCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA |
| Gene | >Ani_SJS100_1|g6604.t1 ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTGT CAGTCACCCAACCCCGACCATGCAGAACTACTACTGACATTATGCTTCATCTTCAGTGGAAACAATCGGATATGT TGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATGCAAAGCGCCCTTATTCT GATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGAATGGTCCAAGCCGAACA GTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTTTCCTTTCTGATGCAAGC CTCTGGTGCGTATATTCCTGTCTCCGAATCCTTTCTGGCAGTATCGCTAAGAACAGTAGGCGCTGGTCTCATGGT CAGCAACTCTAGCGACCCATCCACGGGCGAGCACATTATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGG CTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGACTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATC GCACATCTGGCGTCGCCACATGAACGCTCTTTACATCTCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGT GGTGGAGTACCTGCAGGGATATGACGGCTATCTCATGAAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCT GATGTTCCTGGCGATGGAGATACTCCAATTCATCCATCCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCG TTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATGTCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA |