Protein ID | Ani_SJS100_1|g6604.t1 |
Gene name | |
Location | scaffold_041:253835..254808 |
Strand | + |
Gene length (bp) | 973 |
Transcript length (bp) | 861 |
Coding sequence length (bp) | 861 |
Protein length (aa) | 287 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04479 | RTA1 | RTA1 like protein | 5.5E-70 | 44 | 254 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016021 | integral component of membrane | Yes |
GO:0005575 | cellular_component | No |
GO:0110165 | cellular anatomical entity | No |
GO:0031224 | intrinsic component of membrane | No |
Domain # | Start | End | Length |
---|---|---|---|
1 | 10 | 32 | 22 |
2 | 39 | 61 | 22 |
3 | 76 | 98 | 22 |
4 | 118 | 140 | 22 |
5 | 150 | 172 | 22 |
6 | 197 | 214 | 17 |
7 | 229 | 251 | 22 |
Orthofinder run ID | 3 |
Orthogroup | 6883 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g6604.t1 MAFTLYYYTPSAAAAGIFVVLFGISTVLHFLQLVRTRTWFMIPFFIGGILETIGYVGRLLSSLESPNYSTGSYAM QSALILIAPAFLAASIYMTLGRIIRMVQAEQYSVFRLNWVTKIFVAGDVLSFLMQASGAGLMVSNSSDPSTGEHI IIGGLFVQIIFFGFFIITALIFQMRLAKAPTGTSVDLSHIWRRHMNALYISSVLIFVRSIVRVVEYLQGYDGYLM KHEVFIYVFDALLMFLAMEILQFIHPSQVNCYLGRGDRYSDKVIKTQKFMSVPVEMEVSSV* |
Coding | >Ani_SJS100_1|g6604.t1 ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTTG GAAACAATCGGATATGTTGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATG CAAAGCGCCCTTATTCTGATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGA ATGGTCCAAGCCGAACAGTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTT TCCTTTCTGATGCAAGCCTCTGGCGCTGGTCTCATGGTCAGCAACTCTAGCGACCCATCCACGGGCGAGCACATT ATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGGCTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGA CTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATCGCACATCTGGCGTCGCCACATGAACGCTCTTTACATC TCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGTGGTGGAGTACCTGCAGGGATATGACGGCTATCTCATG AAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCTGATGTTCCTGGCGATGGAGATACTCCAATTCATCCAT CCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCGTTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATG TCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA |
Transcript | >Ani_SJS100_1|g6604.t1 ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTTG GAAACAATCGGATATGTTGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATG CAAAGCGCCCTTATTCTGATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGA ATGGTCCAAGCCGAACAGTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTT TCCTTTCTGATGCAAGCCTCTGGCGCTGGTCTCATGGTCAGCAACTCTAGCGACCCATCCACGGGCGAGCACATT ATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGGCTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGA CTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATCGCACATCTGGCGTCGCCACATGAACGCTCTTTACATC TCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGTGGTGGAGTACCTGCAGGGATATGACGGCTATCTCATG AAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCTGATGTTCCTGGCGATGGAGATACTCCAATTCATCCAT CCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCGTTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATG TCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA |
Gene | >Ani_SJS100_1|g6604.t1 ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTGT CAGTCACCCAACCCCGACCATGCAGAACTACTACTGACATTATGCTTCATCTTCAGTGGAAACAATCGGATATGT TGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATGCAAAGCGCCCTTATTCT GATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGAATGGTCCAAGCCGAACA GTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTTTCCTTTCTGATGCAAGC CTCTGGTGCGTATATTCCTGTCTCCGAATCCTTTCTGGCAGTATCGCTAAGAACAGTAGGCGCTGGTCTCATGGT CAGCAACTCTAGCGACCCATCCACGGGCGAGCACATTATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGG CTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGACTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATC GCACATCTGGCGTCGCCACATGAACGCTCTTTACATCTCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGT GGTGGAGTACCTGCAGGGATATGACGGCTATCTCATGAAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCT GATGTTCCTGGCGATGGAGATACTCCAATTCATCCATCCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCG TTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATGTCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA |