© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6531.t1 |
| Gene name | |
| Location | scaffold_041:49643..50631 |
| Strand | + |
| Gene length (bp) | 988 |
| Transcript length (bp) | 567 |
| Coding sequence length (bp) | 567 |
| Protein length (aa) | 189 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04062 | P21-Arc | ARP2/3 complex ARPC3 (21 kDa) subunit | 8.6E-74 | 1 | 187 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030833 | regulation of actin filament polymerization | Yes |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | Yes |
| GO:0005856 | cytoskeleton | Yes |
| GO:0005885 | Arp2/3 protein complex | Yes |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0097435 | supramolecular fiber organization | No |
| GO:0043254 | regulation of protein-containing complex assembly | No |
| GO:0032271 | regulation of protein polymerization | No |
| GO:0032991 | protein-containing complex | No |
| GO:0032956 | regulation of actin cytoskeleton organization | No |
| GO:0007015 | actin filament organization | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0030832 | regulation of actin filament length | No |
| GO:0050789 | regulation of biological process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0065007 | biological regulation | No |
| GO:0032535 | regulation of cellular component size | No |
| GO:0043226 | organelle | No |
| GO:0090066 | regulation of anatomical structure size | No |
| GO:1902903 | regulation of supramolecular fiber organization | No |
| GO:0044087 | regulation of cellular component biogenesis | No |
| GO:0051128 | regulation of cellular component organization | No |
| GO:0032970 | regulation of actin filament-based process | No |
| GO:0005575 | cellular_component | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0033043 | regulation of organelle organization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0016043 | cellular component organization | No |
| GO:0051493 | regulation of cytoskeleton organization | No |
| GO:0110053 | regulation of actin filament organization | No |
| GO:0045010 | actin nucleation | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008064 | regulation of actin polymerization or depolymerization | No |
| GO:0050794 | regulation of cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6531.t1 MPAYHSIFLEDRDVPVIGNFPILPLRTRTRGPAYTLPPLPPTADTTDVPADSESYDCVDEILSLFRANVLFRNFE INGPADRMLIYGTLFISECLGKVKPGMAMREAEKALINVALDHFAIPGDVSFPLNQAFEAPRDRQDAETLRQYLS QVRQEIAVRLHARLYPGGEGPSKWWLSFAKRKFMGKSF* |
| Coding | >Ani_SJS100_1|g6531.t1 ATGCCGGCATACCACTCCATCTTCCTCGAGGATCGGGATGTCCCCGTAATAGGAAACTTCCCCATCCTCCCCCTC CGCACACGCACCCGCGGCCCCGCATACACCCTCCCCCCGCTCCCGCCCACCGCCGACACCACCGATGTGCCCGCC GACAGCGAATCCTACGACTGCGTCGACGAGATCCTCTCCCTCTTCCGCGCCAATGTCCTCTTCCGTAACTTCGAA ATCAATGGCCCCGCCGATCGCATGCTCATCTACGGTACCTTGTTCATCAGCGAGTGCTTGGGGAAGGTTAAGCCC GGTATGGCTATGCGGGAGGCTGAGAAGGCATTGATCAACGTTGCGCTCGACCACTTCGCTATTCCCGGTGACGTG TCCTTCCCTTTGAACCAGGCGTTTGAGGCGCCCCGCGATCGTCAGGATGCGGAGACGTTGAGACAGTACCTTTCG CAAGTTAGGCAGGAGATCGCGGTTCGGTTGCATGCTAGATTATACCCCGGTGGTGAAGGGCCTTCGAAGTGGTGG CTTAGTTTCGCCAAGAGAAAGTTCATGGGAAAGAGCTTCTAG |
| Transcript | >Ani_SJS100_1|g6531.t1 ATGCCGGCATACCACTCCATCTTCCTCGAGGATCGGGATGTCCCCGTAATAGGAAACTTCCCCATCCTCCCCCTC CGCACACGCACCCGCGGCCCCGCATACACCCTCCCCCCGCTCCCGCCCACCGCCGACACCACCGATGTGCCCGCC GACAGCGAATCCTACGACTGCGTCGACGAGATCCTCTCCCTCTTCCGCGCCAATGTCCTCTTCCGTAACTTCGAA ATCAATGGCCCCGCCGATCGCATGCTCATCTACGGTACCTTGTTCATCAGCGAGTGCTTGGGGAAGGTTAAGCCC GGTATGGCTATGCGGGAGGCTGAGAAGGCATTGATCAACGTTGCGCTCGACCACTTCGCTATTCCCGGTGACGTG TCCTTCCCTTTGAACCAGGCGTTTGAGGCGCCCCGCGATCGTCAGGATGCGGAGACGTTGAGACAGTACCTTTCG CAAGTTAGGCAGGAGATCGCGGTTCGGTTGCATGCTAGATTATACCCCGGTGGTGAAGGGCCTTCGAAGTGGTGG CTTAGTTTCGCCAAGAGAAAGTTCATGGGAAAGAGCTTCTAG |
| Gene | >Ani_SJS100_1|g6531.t1 ATGCCGGTACTATCCCATTTTCTATCTTCCTCTCCATGAAACTCTCCAGACAAATTGACTAATCCCATTCTAGGC ATACCACTCCATCTTCCTCGAGGATCGGGATGTCCCCGTAATAGGTACGCCGCACTCTCCCCGCCATACACTTAC CTAGCTACACCCCATACATCGAGAGCTACCTCCACCATACACTCCAGCCCACCTCCGTATCAGCAGTCCAACTAA TATCCATTGATAGGAAACTTCCCCATCCTCCCCCTCCGCACACGCACCCGCGGCCCCGCATACACCCTCCCCCCG CTCCCGCCCACCGCCGACACCACCGATGTGCCCGCCGACAGCGAATCCTACGACTGCGTCGACGAGATCCTCTCC CTCTTCCGCGCCAATGTCCTCTTCCGTAACTTCGAAATCAATGGCCCCGCCGATCGCATGCTCATCTACGGTACC TTGTTCATCAGCGAGTGCTTGGGGAAGGTTAAGCCCGGTATGGCTATGCGGGAGGCTGAGAAGGTATGCTTTGCT TGCCCTTGTCGTGCTGAGTTGTGAGGGGTTGGTGGTGGCTGTTCGATGTTAGGTGTTGCTTAATGAGGTGAGCGT GCTAATGGGTACTGTTGCAGGCATTGATCAACGTTGCGCTCGACCACTTCGCTATTCCCGGTGACGTGTCCTTCC CTTTGAACCAGGCGTTTGAGGCGCCCCGCGATCGTCAGGATGCGGAGACGTTGAGACAGTACGTTTATTCTTTTT CGGCCCTCTTCGACTGAGGTCTGTGTTGGAGAGTGCTGATTTGGCTGTAATAGGTACCTTTCGCAAGTTAGGCAG GAGATCGCGGTTCGGTTGCATGCTAGATTATACCCCGGTGGTGAAGGGCCTTCGAAGGTATGTATTTCTTTCTTT CTACCCTGCAATTACAGATGGGAGGCTAATTAGGGTGTAGTGGTGGCTTAGTTTCGCCAAGAGAAAGTTCATGGG AAAGAGCTTCTAG |