© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g6506.t1 |
| Gene name | |
| Location | scaffold_040:268185..269981 |
| Strand | - |
| Gene length (bp) | 1796 |
| Transcript length (bp) | 1398 |
| Coding sequence length (bp) | 1398 |
| Protein length (aa) | 466 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 1.1E-12 | 262 | 434 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030001 | metal ion transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0006812 | cation transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0006811 | ion transport | No |
| GO:0005215 | transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 388 | 410 | 22 |
| 2 | 417 | 434 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6506.t1 MFDIPKLDVMEHHLKQALDTEVARKLKAAGSPAETIEALPNDVRLSCLTQTDTRGSTPLALARQRRLLPIVQLFL RYRAEVDLFRDKADWFNLLQDRQDKRDFRYPEEAYQNVSLELVQKKSNIHLFEFYDAKDVTPKGLLAERCDTLRH LWLHNSKQNWIASLNYGLYHEDESYAYSSVHLDTELSEVTCVFSAEFPDTKEGFFKRHTPFQTEDITSYKCWSVS WTKPQYPNAEGYELPAYYSSTLSRGQMPEGDDKFLQHYIFELFQEWSRICDEIETHVIGHCHGDEINATILITDL SDDSRYLAAIQKALQDQVKEIQNVIDEYRRVDERHLSCLGNSEKDLKSFKSIINDRLDKQHERVRDLRQMEFARL SVEETVFMRRISLITFIFLPLMFASSLFGMNVNALQSNPDWRWYIVFGAASLLLTYALWKVSDQNIRLSQIWSEV RARRAMKNKKKDCEG* |
| Coding | >Ani_SJS100_1|g6506.t1 ATGTTTGATATCCCCAAACTTGATGTTATGGAGCATCACCTCAAACAAGCTCTAGATACCGAGGTAGCTAGAAAG CTCAAAGCGGCGGGTTCGCCGGCGGAAACCATTGAGGCCCTACCAAATGATGTGCGGCTGTCCTGTTTAACGCAA ACAGACACGCGAGGCTCTACACCCCTCGCTTTGGCAAGACAAAGACGTCTACTCCCTATTGTACAGCTATTTCTT CGATACCGTGCCGAAGTTGATCTTTTCCGAGATAAAGCAGATTGGTTCAATCTCTTGCAAGACAGGCAAGACAAG CGAGACTTCCGCTACCCAGAAGAAGCGTACCAAAATGTGTCATTGGAGCTTGTACAGAAGAAGAGCAATATTCAC CTGTTTGAATTCTATGACGCGAAGGACGTAACACCAAAAGGCCTTCTTGCTGAACGGTGCGATACTCTACGGCAT CTCTGGCTACATAACAGCAAGCAGAACTGGATAGCCTCTCTGAACTATGGCCTGTACCATGAGGATGAGTCTTAC GCATATAGCTCCGTACATCTTGACACCGAACTGTCCGAGGTAACTTGCGTATTTTCTGCCGAATTCCCTGACACG AAAGAAGGATTTTTCAAAAGACATACGCCATTCCAAACTGAGGATATTACGAGTTATAAATGCTGGTCCGTATCG TGGACAAAACCACAATATCCAAACGCAGAAGGCTATGAGCTACCAGCATACTACAGCAGTACCCTTTCTCGTGGC CAGATGCCCGAAGGTGACGACAAATTCCTCCAACATTATATTTTTGAGTTATTCCAAGAATGGTCTCGCATATGC GATGAGATTGAGACTCATGTGATTGGTCATTGCCATGGTGATGAGATCAACGCCACTATTCTGATTACTGATCTA TCTGATGATTCACGTTACTTGGCAGCAATCCAGAAGGCTCTGCAGGATCAGGTGAAGGAAATACAGAATGTGATT GATGAGTATCGCAGGGTGGACGAGCGCCACCTTTCTTGTTTGGGGAACTCAGAAAAGGATCTTAAATCCTTCAAG TCAATTATCAATGATCGATTAGACAAGCAGCACGAGCGTGTGCGGGATCTTCGTCAGATGGAATTTGCTAGGCTT TCCGTTGAAGAAACGGTCTTCATGAGACGCATCAGTCTCATCACTTTTATCTTCTTACCATTGATGTTTGCATCG AGTCTATTCGGAATGAACGTCAACGCGCTGCAAAGCAACCCTGACTGGCGCTGGTATATCGTTTTTGGTGCCGCC TCGCTCCTTTTGACCTATGCCTTGTGGAAGGTTTCTGATCAGAACATCCGATTATCTCAGATATGGTCTGAAGTA CGTGCGAGGAGGGCTATGAAGAACAAGAAGAAGGATTGCGAGGGCTAG |
| Transcript | >Ani_SJS100_1|g6506.t1 ATGTTTGATATCCCCAAACTTGATGTTATGGAGCATCACCTCAAACAAGCTCTAGATACCGAGGTAGCTAGAAAG CTCAAAGCGGCGGGTTCGCCGGCGGAAACCATTGAGGCCCTACCAAATGATGTGCGGCTGTCCTGTTTAACGCAA ACAGACACGCGAGGCTCTACACCCCTCGCTTTGGCAAGACAAAGACGTCTACTCCCTATTGTACAGCTATTTCTT CGATACCGTGCCGAAGTTGATCTTTTCCGAGATAAAGCAGATTGGTTCAATCTCTTGCAAGACAGGCAAGACAAG CGAGACTTCCGCTACCCAGAAGAAGCGTACCAAAATGTGTCATTGGAGCTTGTACAGAAGAAGAGCAATATTCAC CTGTTTGAATTCTATGACGCGAAGGACGTAACACCAAAAGGCCTTCTTGCTGAACGGTGCGATACTCTACGGCAT CTCTGGCTACATAACAGCAAGCAGAACTGGATAGCCTCTCTGAACTATGGCCTGTACCATGAGGATGAGTCTTAC GCATATAGCTCCGTACATCTTGACACCGAACTGTCCGAGGTAACTTGCGTATTTTCTGCCGAATTCCCTGACACG AAAGAAGGATTTTTCAAAAGACATACGCCATTCCAAACTGAGGATATTACGAGTTATAAATGCTGGTCCGTATCG TGGACAAAACCACAATATCCAAACGCAGAAGGCTATGAGCTACCAGCATACTACAGCAGTACCCTTTCTCGTGGC CAGATGCCCGAAGGTGACGACAAATTCCTCCAACATTATATTTTTGAGTTATTCCAAGAATGGTCTCGCATATGC GATGAGATTGAGACTCATGTGATTGGTCATTGCCATGGTGATGAGATCAACGCCACTATTCTGATTACTGATCTA TCTGATGATTCACGTTACTTGGCAGCAATCCAGAAGGCTCTGCAGGATCAGGTGAAGGAAATACAGAATGTGATT GATGAGTATCGCAGGGTGGACGAGCGCCACCTTTCTTGTTTGGGGAACTCAGAAAAGGATCTTAAATCCTTCAAG TCAATTATCAATGATCGATTAGACAAGCAGCACGAGCGTGTGCGGGATCTTCGTCAGATGGAATTTGCTAGGCTT TCCGTTGAAGAAACGGTCTTCATGAGACGCATCAGTCTCATCACTTTTATCTTCTTACCATTGATGTTTGCATCG AGTCTATTCGGAATGAACGTCAACGCGCTGCAAAGCAACCCTGACTGGCGCTGGTATATCGTTTTTGGTGCCGCC TCGCTCCTTTTGACCTATGCCTTGTGGAAGGTTTCTGATCAGAACATCCGATTATCTCAGATATGGTCTGAAGTA CGTGCGAGGAGGGCTATGAAGAACAAGAAGAAGGATTGCGAGGGCTAG |
| Gene | >Ani_SJS100_1|g6506.t1 ATGTTTGATATCCCCAAACTTGATGTTATGGAGCATCACCTCAAACAAGCTCTAGATACCGAGGTAGCTAGAAAG CTCAAAGCGGCGGGTTCGCCGGCGGAAACCATTGAGGCCCTACCAAATGATGTGCGGCTGTCCTGTTTAACGCAA ACAGACACGCGAGGCTCTACACCCCTCGCTTTGGCAAGACAAAGACGTCTACTCCCTATTGTACAGCTATTTCTT CGATACCGTGCCGAAGTTGATCTTTTCCGAGATAAAGCAGATTGGTTCAATCTCTTGCAAGACAGGCAAGACAAG CGAGACTTCCGCTACCCAGAAGAAGCGTACCAAAATGTGTCATTGGAGCTTGTACAGAAGAAGAGCAATATTCAC CTGTTTGAATTCTATGACGCGAAGGACGTAACACCAAAAGGCCTTCTTGCTGAACGGTGCGATACTCTACGGCAT CTCTGGTAAGCCGTATTCACCCTAGCATCTCTCGAGCTACTAACAAAATGAATTGACAGGCTACATAACAGCAAG CAGAACTGGATAGCCTCTCTGAACTATGGCCTGTACCATGAGGATGAGTCTTACGCATATAGCTCCGTACATCTT GACACCGAACTGTCCGAGGTAACTTGCGTATTTTCTGCCGAATTCCCTGACACGAAAGAAGGATTTTTCAAAAGA CATACGCCATTCCAAACTGAGGATATTACGAGTTATAAATGCTGGTCCGTATCGTGGACAAAACCACAATATCCA AACGCAGAAGGCTATGAGCTACCAGCATACTACAGCAGTACCCTTTCTCGTGGCCAGATGCCCGAAGGTGACGAC AAATTCCTCCAACATTATATTTTTGAGTTATTCCAAGAATGGTCTCGCATATGCGATGAGATTGAGACTCATGTG ATTGGTCATGTATATCGAATCCCTACCTCGGCTTTTGTGTGCTACACTGACGCTTTCTGATCACTAGTGCCATGG TGATGAGATCAACGCCACTATTCTGATTACTGATCTATCTGATGATTCACGTTACTTGGCAGCAATCCAGAAGGC TCTGCAGGATCAGGTGAAGGAAATACAGAATGTGATTGATGAGTATCGCAGGGTGGACGAGCGCCACCTTTCTTG TTTGGGGAACTCAGAAAAGGATCTTAAATCCTTCAAGTCAATTATCAATGATCGATTAGACAAGCAGCACGAGCG TGTGCGGGATCTTCGTCAGATGGTAAGGGAACTAGATTCTTAACCGAATTGAATGGACCTGACAGTATCAGGAAT TTGCTAGGCTTTCCGTTGAAGAAACGGTCTTCATGAGACGCATCAGTCTCATCACTGTGAGTAGCGCCTCTTCTC CAATCGTCTATTTTGCATTTGATCTTTTGGCTGACAGAGGTAGTTTATCTTCTTACCATTGATGTTTGCATCGGT ACATACCCACTATTACTGCTTCTATATTCTCTCTTCTTCTTTCACCCGGCTGATAGCAACAGAGTCTATTCGGAA TGAACGTCAACGCGCTGCAAAGCAACCCTGACTGGCGCTGGTATATCGTTTTTGGTGCCGCCTCGCTCCTTTTGA CCTATGCCTTGTGGAAGGTTTCTGATCAGGTTAGTTAGTAGTTATCTTGGAGCTCTACTTCATTGCCCCAATCTA CAATTGCTTTTTTTCCGTTCTTCTTCATTTTGCTTCGATAGTATACCGTGCTAATGCGTTATCAGAACATCCGAT TATCTCAGATATGGTCTGAAGTACGTGCGAGGAGGGCTATGAAGAACAAGAAGAAGGATTGCGAGGGCTAG |