Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g6499.t1
Gene name
Locationscaffold_040:245640..246819
Strand+
Gene length (bp)1179
Transcript length (bp)972
Coding sequence length (bp)972
Protein length (aa) 324

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00544 Pectate_lyase_4 Pectate lyase 1.7E-42 84 260

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g6499.t1
MTNFKWIVAAAGLLSGQVLAAPTATSTHAKRATVSDAAFGYASLNGGTTGGAGGTTTTVSSYAAFTSAVSGDDAK
VVYVDGTIKQTADQVKIGSNTSIIGKDANAILEGFGVLVKEKENVIIRNLGVSKVLADNGDAIGVQYSNNVWIDH
CDVSSDRDHDKDYYDGLIDITHGSDYVTVSNTFIHDHWKASLVGHSDSNEDEDSGHLTVTYANNYWYNVNSRAPS
FRFGTGHVYNSYYLDVSDGINTRDGAQLLVESNQFVDSKKALYSTDDGYAVSNDNDFGDSENTAEEGTLTSMPYD
YTLLGSANVKAAVVGTAGQTLTF*
Coding >Ani_SJS100_1|g6499.t1
ATGACCAACTTCAAGTGGATCGTTGCCGCCGCCGGTCTCCTGTCTGGACAGGTCCTGGCTGCTCCTACTGCCACT
TCTACCCATGCCAAGCGCGCAACCGTCAGCGACGCTGCGTTCGGCTATGCTAGCCTGAACGGCGGCACCACCGGT
GGTGCCGGCGGTACTACCACTACCGTCTCGTCCTACGCTGCCTTCACCTCCGCTGTCTCCGGCGATGACGCCAAG
GTCGTCTACGTCGACGGCACCATCAAGCAGACCGCCGACCAGGTCAAGATTGGCAGCAACACCTCCATCATCGGC
AAGGACGCCAACGCCATCCTCGAGGGATTCGGAGTTCTCGTCAAGGAGAAGGAGAACGTTATCATCCGTAACCTC
GGAGTCTCCAAGGTCCTTGCTGACAACGGCGATGCCATTGGTGTCCAGTACTCCAACAACGTCTGGATCGACCAC
TGCGATGTCTCCTCCGACCGTGACCACGACAAGGACTACTACGACGGTCTGATTGACATTACCCACGGCTCCGAC
TACGTGACCGTCTCCAACACCTTCATCCACGACCACTGGAAGGCTTCCCTGGTCGGCCACTCCGATAGCAACGAA
GACGAGGACAGCGGCCACCTCACCGTCACCTACGCCAACAACTACTGGTACAACGTCAACTCCCGCGCTCCCTCT
TTCCGCTTCGGTACCGGCCACGTCTACAACAGCTACTACCTGGACGTCAGCGACGGCATCAACACCCGTGACGGC
GCCCAGCTGCTCGTCGAGTCCAACCAGTTCGTCGACTCCAAGAAGGCTCTCTACTCCACCGACGATGGCTACGCC
GTCTCCAACGACAACGACTTCGGTGATTCTGAGAACACTGCCGAGGAGGGTACCCTGACTTCCATGCCTTATGAC
TACACCCTTCTTGGCTCCGCCAACGTTAAGGCTGCTGTCGTCGGCACTGCCGGTCAGACTCTTACTTTCTAA
Transcript >Ani_SJS100_1|g6499.t1
ATGACCAACTTCAAGTGGATCGTTGCCGCCGCCGGTCTCCTGTCTGGACAGGTCCTGGCTGCTCCTACTGCCACT
TCTACCCATGCCAAGCGCGCAACCGTCAGCGACGCTGCGTTCGGCTATGCTAGCCTGAACGGCGGCACCACCGGT
GGTGCCGGCGGTACTACCACTACCGTCTCGTCCTACGCTGCCTTCACCTCCGCTGTCTCCGGCGATGACGCCAAG
GTCGTCTACGTCGACGGCACCATCAAGCAGACCGCCGACCAGGTCAAGATTGGCAGCAACACCTCCATCATCGGC
AAGGACGCCAACGCCATCCTCGAGGGATTCGGAGTTCTCGTCAAGGAGAAGGAGAACGTTATCATCCGTAACCTC
GGAGTCTCCAAGGTCCTTGCTGACAACGGCGATGCCATTGGTGTCCAGTACTCCAACAACGTCTGGATCGACCAC
TGCGATGTCTCCTCCGACCGTGACCACGACAAGGACTACTACGACGGTCTGATTGACATTACCCACGGCTCCGAC
TACGTGACCGTCTCCAACACCTTCATCCACGACCACTGGAAGGCTTCCCTGGTCGGCCACTCCGATAGCAACGAA
GACGAGGACAGCGGCCACCTCACCGTCACCTACGCCAACAACTACTGGTACAACGTCAACTCCCGCGCTCCCTCT
TTCCGCTTCGGTACCGGCCACGTCTACAACAGCTACTACCTGGACGTCAGCGACGGCATCAACACCCGTGACGGC
GCCCAGCTGCTCGTCGAGTCCAACCAGTTCGTCGACTCCAAGAAGGCTCTCTACTCCACCGACGATGGCTACGCC
GTCTCCAACGACAACGACTTCGGTGATTCTGAGAACACTGCCGAGGAGGGTACCCTGACTTCCATGCCTTATGAC
TACACCCTTCTTGGCTCCGCCAACGTTAAGGCTGCTGTCGTCGGCACTGCCGGTCAGACTCTTACTTTCTAA
Gene >Ani_SJS100_1|g6499.t1
ATGACCAACTTCAAGTGGATCGTTGCCGCCGCCGGTCTCCTGTCTGGACAGGTCCTGGCTGCTCCTACTGCCACT
TCTACCCATGCCAAGCGCGCAACCGTCAGCGACGTAAGCACCCTCCCTGTGAAGAACCCCACAGATATTGACATT
GGCAGGCTGCGTTCGGCTATGCTAGCCTGAACGGCGGCACCACCGGTGGTGCCGGCGGTACTACCACTACCGTCT
CGTCCTACGCTGCCTTCACCTCCGCTGTCTCCGGCGATGACGCCAAGGTCGTCTACGTCGACGGCACCATCAAGC
AGACCGCCGACCAGGTCAAGATTGGCAGCAACACCTCCATCATCGGCAAGGACGCCAACGCCATCCTCGAGGGAT
TCGGAGTGTAAGCACGTCCCAACAAGAGGGAGCTGAATTAAGCTTACATGCAACAGTCTCGTCAAGGAGAAGGAG
AACGTTATCATCCGTAACCTCGGAGTCTCCAAGGTCCTTGCTGACAACGGCGATGCCATTGGTGTCCGTACGTGA
CACCCACTCATCCTGCACACCCTACCAGATGCTAATTCAAGCAGAGTACTCCAACAACGTCTGGATCGACCACTG
CGATGTCTCCTCCGACCGTGACCACGACAAGGACTACTACGACGGTCTGATTGACGTATGCCACCCACCACCACC
ATCATACCAAAAGGGTCCTCACTCACTAACAACTACTAGATTACCCACGGCTCCGACTACGTGACCGTCTCCAAC
ACCTTCATCCACGACCACTGGAAGGCTTCCCTGGTCGGCCACTCCGATAGCAACGAAGACGAGGACAGCGGCCAC
CTCACCGTCACCTACGCCAACAACTACTGGTACAACGTCAACTCCCGCGCTCCCTCTTTCCGCTTCGGTACCGGC
CACGTCTACAACAGCTACTACCTGGACGTCAGCGACGGCATCAACACCCGTGACGGCGCCCAGCTGCTCGTCGAG
TCCAACCAGTTCGTCGACTCCAAGAAGGCTCTCTACTCCACCGACGATGGCTACGCCGTCTCCAACGACAACGAC
TTCGGTGATTCTGAGAACACTGCCGAGGAGGGTACCCTGACTTCCATGCCTTATGACTACACCCTTCTTGGCTCC
GCCAACGTTAAGGCTGCTGTCGTCGGCACTGCCGGTCAGACTCTTACTTTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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