© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g6453.t1 |
| Gene name | |
| Location | scaffold_040:106272..108054 |
| Strand | - |
| Gene length (bp) | 1782 |
| Transcript length (bp) | 1449 |
| Coding sequence length (bp) | 1449 |
| Protein length (aa) | 483 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00270 | DEAD | DEAD/DEAH box helicase | 3.4E-34 | 99 | 267 |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | 8.2E-24 | 305 | 424 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043168 | anion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6453.t1 MASEQPEAGSLADRITKPEESAPAEAPEQTEDIPQTDGAAAQQGGSDLHEPDYTVEVKLSDLQADPNNPLFSVKN FEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLGNPAKNLVGQSQSGTGKTAAFVLNILSRLDLSSEQLQKTPQ ALILAPTRELARQIVGVIQVMGQFLDGLVIGTAVPADTGARPAKMECSVVVGTPGTVMDMIKRRIMIANKLRVLV LDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPAHVHEYASKFAPQANEITLQHEELTVEGIKQLYLDCS NDEDKYQTLVNLYGLLTVGSSIIFVKTRASAQEIEKRMVAEGHTVASLTGGIEGSQRDAVIDQFRAGHAKVLITT NVLARGIDVSTVSMVINYDIPEIHQPGARQRQADFQTYLHRIGRTGRFGRVGVSISFVSNREEWEMLNQIQRYFN TNIQRIDTKDWDEVEEIIKKTIKSSRAQLGFR* |
| Coding | >Ani_SJS100_1|g6453.t1 ATGGCGTCTGAACAACCTGAGGCCGGTTCTCTTGCGGACCGCATCACCAAGCCGGAGGAATCTGCCCCTGCTGAA GCTCCCGAACAGACCGAAGACATCCCTCAGACCGATGGTGCCGCCGCTCAGCAGGGTGGCTCCGATCTCCATGAG CCTGACTACACCGTTGAAGTCAAGCTCAGCGATCTCCAGGCCGACCCGAATAACCCCCTTTTCTCCGTAAAGAAC TTTGAAGATCTCGGCCTGGACCCCCGTATCCTCCAGGGATTGTCGGCAATGAACTTCCGGAAACCCTCCAAGATC CAAGAGAGAGCCCTCCCGCTGCTACTTGGCAACCCCGCCAAGAATCTGGTCGGTCAGTCTCAGTCCGGTACTGGA AAGACTGCGGCCTTCGTCCTGAACATCCTCAGTCGATTGGACCTCTCGTCGGAGCAGTTGCAAAAGACCCCCCAG GCGTTGATCCTGGCCCCCACACGAGAGCTGGCTCGTCAGATTGTTGGTGTCATTCAAGTTATGGGCCAGTTCCTT GATGGGCTCGTTATTGGTACCGCTGTGCCGGCAGATACCGGCGCACGCCCGGCCAAGATGGAGTGCTCCGTCGTT GTGGGTACTCCTGGTACTGTTATGGACATGATTAAGAGGCGCATCATGATTGCGAACAAGCTCCGCGTGCTTGTT CTCGACGAAGCCGACAACATGCTGGACCAGCAAGGTCTGGGTGACCAGTGTATCCGTGTGAAGGCTTTGTTGCCT AGGGATATCCAGGTCGTCCTCTTTTCCGCTACCTTCCCTGCTCACGTCCACGAATATGCGTCCAAGTTCGCTCCT CAGGCCAACGAGATTACCCTCCAGCACGAGGAGTTGACCGTCGAGGGTATCAAGCAGCTGTACCTGGACTGCTCG AATGACGAGGACAAGTACCAGACCCTTGTCAATCTCTACGGTCTGCTCACCGTCGGCTCGTCCATCATCTTCGTT AAGACCCGTGCTTCGGCCCAGGAGATCGAAAAGCGCATGGTTGCCGAGGGTCACACCGTGGCATCTCTTACCGGT GGCATTGAGGGTTCGCAGCGTGATGCAGTCATTGACCAATTCCGTGCCGGACACGCGAAGGTCTTGATTACGACC AACGTGCTTGCCCGAGGTATTGATGTCTCGACTGTGTCCATGGTTATCAACTACGATATCCCTGAGATCCACCAA CCCGGCGCCCGTCAACGACAGGCCGACTTCCAGACCTACCTGCACCGTATTGGCCGTACGGGACGTTTCGGCCGC GTGGGTGTATCCATCTCCTTTGTGTCCAACCGGGAAGAGTGGGAGATGCTCAACCAGATTCAGAGATACTTCAAC ACCAACATCCAGCGGATTGACACCAAGGACTGGGACGAGGTGGAGGAGATTATCAAGAAGACGATCAAGAGCTCG CGTGCTCAGCTCGGCTTCCGGTAG |
| Transcript | >Ani_SJS100_1|g6453.t1 ATGGCGTCTGAACAACCTGAGGCCGGTTCTCTTGCGGACCGCATCACCAAGCCGGAGGAATCTGCCCCTGCTGAA GCTCCCGAACAGACCGAAGACATCCCTCAGACCGATGGTGCCGCCGCTCAGCAGGGTGGCTCCGATCTCCATGAG CCTGACTACACCGTTGAAGTCAAGCTCAGCGATCTCCAGGCCGACCCGAATAACCCCCTTTTCTCCGTAAAGAAC TTTGAAGATCTCGGCCTGGACCCCCGTATCCTCCAGGGATTGTCGGCAATGAACTTCCGGAAACCCTCCAAGATC CAAGAGAGAGCCCTCCCGCTGCTACTTGGCAACCCCGCCAAGAATCTGGTCGGTCAGTCTCAGTCCGGTACTGGA AAGACTGCGGCCTTCGTCCTGAACATCCTCAGTCGATTGGACCTCTCGTCGGAGCAGTTGCAAAAGACCCCCCAG GCGTTGATCCTGGCCCCCACACGAGAGCTGGCTCGTCAGATTGTTGGTGTCATTCAAGTTATGGGCCAGTTCCTT GATGGGCTCGTTATTGGTACCGCTGTGCCGGCAGATACCGGCGCACGCCCGGCCAAGATGGAGTGCTCCGTCGTT GTGGGTACTCCTGGTACTGTTATGGACATGATTAAGAGGCGCATCATGATTGCGAACAAGCTCCGCGTGCTTGTT CTCGACGAAGCCGACAACATGCTGGACCAGCAAGGTCTGGGTGACCAGTGTATCCGTGTGAAGGCTTTGTTGCCT AGGGATATCCAGGTCGTCCTCTTTTCCGCTACCTTCCCTGCTCACGTCCACGAATATGCGTCCAAGTTCGCTCCT CAGGCCAACGAGATTACCCTCCAGCACGAGGAGTTGACCGTCGAGGGTATCAAGCAGCTGTACCTGGACTGCTCG AATGACGAGGACAAGTACCAGACCCTTGTCAATCTCTACGGTCTGCTCACCGTCGGCTCGTCCATCATCTTCGTT AAGACCCGTGCTTCGGCCCAGGAGATCGAAAAGCGCATGGTTGCCGAGGGTCACACCGTGGCATCTCTTACCGGT GGCATTGAGGGTTCGCAGCGTGATGCAGTCATTGACCAATTCCGTGCCGGACACGCGAAGGTCTTGATTACGACC AACGTGCTTGCCCGAGGTATTGATGTCTCGACTGTGTCCATGGTTATCAACTACGATATCCCTGAGATCCACCAA CCCGGCGCCCGTCAACGACAGGCCGACTTCCAGACCTACCTGCACCGTATTGGCCGTACGGGACGTTTCGGCCGC GTGGGTGTATCCATCTCCTTTGTGTCCAACCGGGAAGAGTGGGAGATGCTCAACCAGATTCAGAGATACTTCAAC ACCAACATCCAGCGGATTGACACCAAGGACTGGGACGAGGTGGAGGAGATTATCAAGAAGACGATCAAGAGCTCG CGTGCTCAGCTCGGCTTCCGGTAG |
| Gene | >Ani_SJS100_1|g6453.t1 ATGGCGTCTGAACAACCTGAGGCCGGTTCTCTTGCGGACCGCATCACCAAGCCGGAGGAATCTGCCCCTGCTGGT ACGATATTTGTCTACTTCTATGCCACCGCTCGTTTCACTTCCATGTCACTTTCTTACCAATCCCTATCGGACCCT GACTTATGCGATCATCTTGTGCAGAAGCTCCCGAACAGACCGAAGACATCCCTCAGACCGATGGTGCCGCCGCTC AGCAGGGTGGCTCCGATCTCCATGAGCCTGACTACACCGTTGAAGTCAAGCTCAGCGATCTCCAGGCCGACCCGA ATAACCCCCTTTTCTCCGTAAAGAACTTTGAAGATCTCGGCCTGTGCGTGGATCCGTCAATCTCGGTTGTTGTGC TGCTACACTAGGGTGCTAACCCATCGTGAAATCAGGGACCCCCGTATCCTCCAGGGATTGTCGGCAATGAACTTC CGGAAACCCTCCAAGATCCAAGAGAGAGCCCTCCCGCTGCTACTTGGCAACCCCGCCAAGAATCTGGTCGGTCAG TCTCAGTCCGGTACTGGAAAGACTGCGGCCTTCGTCCTGAACATCCTCAGTCGATTGGACCTCTCGTCGGAGCAG TTGCAAAAGACCCCCCAGGCGTTGATCCTGGCCCCCACACGAGAGCTGGCTCGTCAGATTGTTGGTGTCATTCAA GTTATGGGCCAGTTCCTTGATGGGCTCGTTATTGGTACCGCTGTGCCGGCAGATACCGGCGCACGCCCGGCCAAG ATGGAGTGCTCCGTCGTTGTGGGTACTCCTGGTACTGTTATGGACATGATTAAGAGGCGCATCATGATTGCGAAC AAGCTCCGCGTGCTTGTTCTCGACGAAGCCGACAACATGCTGGACCAGCAAGGTCTGGGTGACCAGTGTATCCGT GTGAAGGCGTCAGTATCTCTACTTTTACGCTTTGCGCCACTCGTACTAAAGTCCATCCAGTTTGTTGCCTAGGGA TATCCAGGTCGTCCTCTTTTCCGCTACCTTCCCTGCTCACGTCCACGAATATGCGTCCAAGTTCGCTCCTCAGGC CAACGAGATTACCCTCCAGCACGAGGAGTTGACCGTCGAGGGTATCAAGCAGCTGTACCTGGACTGCTCGAATGA CGAGGACAAGTACCAGACCCTTGTCAATCTCTACGGTCTGCTCACCGTCGGCTCGTCCATCATCTTCGTTAAGGT TTGTTCACGTCCTCTACAACATTGCAATGTCTCTAACGGAGGATTAGACCCGTGCTTCGGCCCAGGAGATCGAAA AGCGCATGGTTGCCGAGGGTCACACCGTGGCATCTCTTACCGGTGGCATTGAGGGTTCGCAGCGTGATGCAGTCA TTGACCAATTCCGTGCCGGACACGCGAAGGTCTTGATTACGACCAACGTGCTTGCCCGAGGTATTGATGTCTCGA CTGTGTCCATGGTTATCAACTACGTAAGCAATGCCCTTTCGATGATCGTTGCGGGTTGAAATGCTAATGACGCAT CCTAATAAATAGGATATCCCTGAGATCCACCAACCCGGCGCCCGTCAACGACAGGCCGACTTCCAGACCTACCTG CACCGTATTGGCCGTACGGGACGTTTCGGCCGCGTGGGTGTATCCATCTCCTTTGTGTCCAACCGGGAAGAGTGG GAGATGCTCAACCAGATTCAGAGATACTTCAACACCAACATCCAGCGGATTGACACCAAGGACTGGGACGAGGTG GAGGAGATTATCAAGAAGACGATCAAGAGCTCGCGTGCTCAGCTCGGCTTCCGGTAG |