© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6356.t1 |
| Gene name | |
| Location | scaffold_039:107774..108570 |
| Strand | - |
| Gene length (bp) | 796 |
| Transcript length (bp) | 507 |
| Coding sequence length (bp) | 507 |
| Protein length (aa) | 169 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01466 | Skp1 | Skp1 family, dimerisation domain | 6.4E-30 | 118 | 165 |
| PF03931 | Skp1_POZ | Skp1 family, tetramerisation domain | 1.2E-22 | 11 | 72 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | Yes |
| GO:0006508 | proteolysis | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6356.t1 MADTPAPHSGPMLTFISGDGVHIECERDVAERSLLIKNMLEDLGGANEEIPIPNVNEAVLKKVIEWCRHHKNDPP STGEEDDSRRKTTDIDEWDQKFTQVDQEMLFEIILAANYLDIKGLLDVGCKTVANMIKGKSPEEIRKTFNIQNDF TPEEEDQIRRENEWAEDR* |
| Coding | >Ani_SJS100_1|g6356.t1 ATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGACCTTCATCAGTGGCGACGGCGTGCATATTGAGTGT GAACGCGATGTTGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTGGGTGGCGCCAACGAGGAGATC CCGATCCCTAATGTCAACGAAGCTGTCTTGAAGAAGGTCATCGAATGGTGCAGACATCACAAGAACGACCCCCCC AGCACTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTACCCAGGTC GATCAAGAAATGTTGTTCGAGATCATTCTGGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGACGTCGGATGC AAAACCGTTGCGAACATGATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACATCCAGAACGATTTC ACCCCCGAGGAGGAGGATCAGATCCGCCGTGAGAACGAGTGGGCCGAGGATCGCTAA |
| Transcript | >Ani_SJS100_1|g6356.t1 ATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGACCTTCATCAGTGGCGACGGCGTGCATATTGAGTGT GAACGCGATGTTGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTGGGTGGCGCCAACGAGGAGATC CCGATCCCTAATGTCAACGAAGCTGTCTTGAAGAAGGTCATCGAATGGTGCAGACATCACAAGAACGACCCCCCC AGCACTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTACCCAGGTC GATCAAGAAATGTTGTTCGAGATCATTCTGGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGACGTCGGATGC AAAACCGTTGCGAACATGATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACATCCAGAACGATTTC ACCCCCGAGGAGGAGGATCAGATCCGCCGTGAGAACGAGTGGGCCGAGGATCGCTAA |
| Gene | >Ani_SJS100_1|g6356.t1 ATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGACCTTCATCAGTGGCGACGGCGTGCATATTGAGTGT GGTAAGTGCACGCGTTTCAATAAGCTCAGCAGACGCGCTCAGTGTCTGTGTCACGATGAGACCATATATGCTAAC ATGTGTGTGAAAATACAGAACGCGATGTTGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTGGGTG GCGCCAACGAGGAGATCCCGATCCCTAATGTGAGTTATCCGTTCGAAGTAAAATGGCCATTGGTGACCATAGCTA ACCACACCCGCAACACAGGTCAACGAAGCTGTCTTGAAGAAGGTCATCGAATGGTGCAGACATCACAAGAACGAC CCCCCCAGCACTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTACC CAGGTCGATCAAGAAATGTTGTTCGAGATCATTCTGGTACGCGTTACGAACTATGATCTACAAAAGCCCCTCAGC TAACTTGGCGCTTAACTTGATAGGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGACGTCGGATGCAAAACCG TTGCGAACATGATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACATCCAGAACGATTTCACCCCCG AGGAGGAGGATCAGATCCGCCGTGAGAACGAGTGGGCCGAGGAGTAAGTTCCTTACAAACCCATCCCCCGCTATC TTACCACCTGATCGTATGCTAACATTGTACTTGCTATAGTCGCTAA |