Protein ID | Ani_SJS100_1|g6300.t1 |
Gene name | |
Location | scaffold_038:222630..224873 |
Strand | - |
Gene length (bp) | 2243 |
Transcript length (bp) | 2184 |
Coding sequence length (bp) | 2184 |
Protein length (aa) | 728 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06011 | TRP | Transient receptor potential (TRP) ion channel | 1.3E-142 | 169 | 623 |
PF14558 | TRP_N | ML-like domain | 2.5E-41 | 26 | 164 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 23 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 352 | 374 | 22 |
2 | 394 | 416 | 22 |
3 | 431 | 453 | 22 |
4 | 490 | 512 | 22 |
5 | 522 | 539 | 17 |
6 | 552 | 569 | 17 |
7 | 584 | 606 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g6300.t1 MRLIPSFSTLTALGLLATRALAADTLSTNGLTTCMSDSAIQVDKLSVTYTRSTREIVFDVSGTNGVEQNVTAILT IYAYGSQLYSETFDPCSSKYYVEQLCPVAAGSFSATGTQTLPESIASEIPSIAFAIPDLDGQVKLQLLSKTDNDE LACIQSELTNGNTMQIAGVSYAAAGVAGAALAVSGLSALGAVGHPGAVSSSPSFGDVVSWFHTMATNGMLSVSYP TVYRSFSKNFAFSTGLIPWGQMQESIDNFRKSTGGNLTDNSYQYLLNATLVYSDGTNSSSKSKRGLDLVTGMANL AAREVSTSYSSNTTSSSNSTSDDSSSFEHFVSGIEAYAEQLTIPQANTFMTVLLIFAILIAAIAVGILLLKVILE VWALYGSFPDKLTNFRKDYWGLLGRTITNLILLLYGVWVIWCVYQLSSGDSWAAKLLAAVALTVFTAVLLYFGLK IMFVARKYKKTEGDASHLYDNDETWRKYSLFYDNYKKDYWWAFVPAIVYMFAKGCVIAAGDGHGLAQSAGQLIVE ALMLTLLLWNRPYVAKSSQWINISVQVVRVLSIACVLIFVDELGLSETTKTVTGIVLIAIQSGLSGILAILIATN AIILCIRENPHAKRKREANKMNRDLDDLTPLDARESLLMEHPPRKDYAEMSKFNFTGPYEPYRDQHDSKSRHSPT GSTDRLVDSSYPLEDVNGRSISRESRRSHDSHGSHENPEKHHATTPGYGFAY* |
Coding | >Ani_SJS100_1|g6300.t1 ATGCGGCTCATTCCTTCTTTTTCGACCCTTACGGCGCTGGGTCTCCTGGCCACTCGAGCCCTCGCTGCCGATACC CTCAGCACCAATGGTCTGACAACTTGTATGTCAGACTCTGCTATCCAAGTCGACAAACTATCCGTCACCTATACC CGTTCTACTAGAGAAATCGTCTTCGATGTTTCCGGCACCAATGGGGTAGAACAGAATGTCACGGCAATCTTGACC ATCTATGCCTACGGCAGTCAACTCTACTCCGAAACGTTCGACCCGTGCAGCAGCAAATACTACGTGGAGCAACTC TGTCCCGTGGCTGCCGGTAGCTTCTCCGCGACTGGCACGCAGACCCTACCTGAATCGATCGCTAGTGAAATCCCC TCCATCGCCTTCGCCATCCCAGACTTGGATGGCCAAGTGAAGCTTCAATTGCTGTCCAAGACCGACAATGACGAG CTGGCATGCATCCAATCGGAACTGACCAACGGCAATACTATGCAGATCGCTGGTGTATCCTATGCTGCTGCTGGT GTGGCTGGTGCGGCATTGGCCGTGAGCGGGCTGTCAGCTCTGGGTGCTGTTGGCCACCCTGGTGCCGTCTCATCT AGTCCCAGCTTTGGTGATGTCGTGAGTTGGTTTCACACTATGGCCACTAATGGAATGCTCAGTGTCAGCTACCCG ACGGTGTACCGCAGCTTTTCGAAGAACTTTGCCTTCAGCACGGGTTTGATTCCTTGGGGTCAAATGCAGGAGTCC ATCGATAACTTCCGGAAGTCGACCGGCGGCAATCTCACCGACAACAGCTACCAGTATCTTCTCAATGCCACGCTC GTGTACTCTGACGGCACGAATTCTAGCTCAAAGTCGAAGCGAGGACTGGATCTGGTCACAGGCATGGCTAACCTA GCTGCGCGCGAGGTCTCGACTTCGTATAGCAGCAATACTACTTCGTCGTCTAACAGCACCAGTGACGACAGCAGT AGTTTCGAACATTTCGTCTCCGGAATTGAGGCCTATGCCGAACAGTTGACCATCCCTCAAGCCAACACCTTCATG ACCGTTCTGCTCATTTTCGCTATCCTAATTGCCGCTATTGCCGTTGGCATCTTGTTGCTCAAGGTCATCCTCGAA GTTTGGGCGCTCTACGGCTCTTTCCCGGACAAACTCACCAACTTCCGCAAAGACTACTGGGGTCTCCTGGGTCGC ACAATTACCAACTTGATTCTGCTGCTGTACGGCGTTTGGGTGATTTGGTGTGTCTATCAGCTCAGCAGTGGGGAT TCGTGGGCGGCGAAGCTCTTGGCTGCTGTGGCGCTTACAGTTTTCACGGCTGTGTTATTGTACTTTGGTCTCAAG ATCATGTTCGTGGCTCGGAAGTACAAGAAGACTGAAGGTGATGCGTCCCATTTGTACGACAACGATGAAACCTGG CGCAAGTACAGTCTTTTCTACGACAACTACAAAAAGGACTACTGGTGGGCATTCGTCCCTGCCATTGTATACATG TTTGCCAAGGGTTGCGTCATTGCTGCTGGAGATGGTCATGGGCTTGCCCAAAGCGCTGGCCAACTCATCGTGGAG GCTCTCATGCTCACCCTTTTGCTGTGGAACCGTCCGTACGTTGCCAAGTCTAGCCAGTGGATCAACATTTCAGTC CAGGTGGTTCGTGTCTTGTCAATCGCGTGTGTGTTGATCTTCGTCGACGAGCTGGGGCTCTCGGAGACGACCAAA ACTGTTACCGGCATTGTCCTCATTGCTATTCAGTCGGGACTGAGTGGTATCTTGGCCATTCTTATTGCCACCAAC GCCATTATCCTCTGCATTCGCGAGAACCCTCATGCTAAACGGAAGAGGGAAGCTAACAAAATGAATCGTGATCTC GATGATTTGACCCCTCTTGACGCCCGTGAATCTCTGCTCATGGAGCATCCTCCTCGCAAGGATTACGCTGAAATG AGCAAGTTCAACTTTACCGGTCCTTACGAACCATACCGGGATCAACATGATTCGAAATCGCGACACAGCCCTACA GGTAGCACGGATCGGCTGGTTGATTCAAGCTACCCTCTTGAAGACGTCAATGGTCGAAGTATAAGTCGAGAAAGC CGCCGAAGCCATGACAGTCATGGCAGCCATGAAAACCCTGAAAAGCACCATGCCACGACCCCGGGTTATGGGTTC GCTTACTGA |
Transcript | >Ani_SJS100_1|g6300.t1 ATGCGGCTCATTCCTTCTTTTTCGACCCTTACGGCGCTGGGTCTCCTGGCCACTCGAGCCCTCGCTGCCGATACC CTCAGCACCAATGGTCTGACAACTTGTATGTCAGACTCTGCTATCCAAGTCGACAAACTATCCGTCACCTATACC CGTTCTACTAGAGAAATCGTCTTCGATGTTTCCGGCACCAATGGGGTAGAACAGAATGTCACGGCAATCTTGACC ATCTATGCCTACGGCAGTCAACTCTACTCCGAAACGTTCGACCCGTGCAGCAGCAAATACTACGTGGAGCAACTC TGTCCCGTGGCTGCCGGTAGCTTCTCCGCGACTGGCACGCAGACCCTACCTGAATCGATCGCTAGTGAAATCCCC TCCATCGCCTTCGCCATCCCAGACTTGGATGGCCAAGTGAAGCTTCAATTGCTGTCCAAGACCGACAATGACGAG CTGGCATGCATCCAATCGGAACTGACCAACGGCAATACTATGCAGATCGCTGGTGTATCCTATGCTGCTGCTGGT GTGGCTGGTGCGGCATTGGCCGTGAGCGGGCTGTCAGCTCTGGGTGCTGTTGGCCACCCTGGTGCCGTCTCATCT AGTCCCAGCTTTGGTGATGTCGTGAGTTGGTTTCACACTATGGCCACTAATGGAATGCTCAGTGTCAGCTACCCG ACGGTGTACCGCAGCTTTTCGAAGAACTTTGCCTTCAGCACGGGTTTGATTCCTTGGGGTCAAATGCAGGAGTCC ATCGATAACTTCCGGAAGTCGACCGGCGGCAATCTCACCGACAACAGCTACCAGTATCTTCTCAATGCCACGCTC GTGTACTCTGACGGCACGAATTCTAGCTCAAAGTCGAAGCGAGGACTGGATCTGGTCACAGGCATGGCTAACCTA GCTGCGCGCGAGGTCTCGACTTCGTATAGCAGCAATACTACTTCGTCGTCTAACAGCACCAGTGACGACAGCAGT AGTTTCGAACATTTCGTCTCCGGAATTGAGGCCTATGCCGAACAGTTGACCATCCCTCAAGCCAACACCTTCATG ACCGTTCTGCTCATTTTCGCTATCCTAATTGCCGCTATTGCCGTTGGCATCTTGTTGCTCAAGGTCATCCTCGAA GTTTGGGCGCTCTACGGCTCTTTCCCGGACAAACTCACCAACTTCCGCAAAGACTACTGGGGTCTCCTGGGTCGC ACAATTACCAACTTGATTCTGCTGCTGTACGGCGTTTGGGTGATTTGGTGTGTCTATCAGCTCAGCAGTGGGGAT TCGTGGGCGGCGAAGCTCTTGGCTGCTGTGGCGCTTACAGTTTTCACGGCTGTGTTATTGTACTTTGGTCTCAAG ATCATGTTCGTGGCTCGGAAGTACAAGAAGACTGAAGGTGATGCGTCCCATTTGTACGACAACGATGAAACCTGG CGCAAGTACAGTCTTTTCTACGACAACTACAAAAAGGACTACTGGTGGGCATTCGTCCCTGCCATTGTATACATG TTTGCCAAGGGTTGCGTCATTGCTGCTGGAGATGGTCATGGGCTTGCCCAAAGCGCTGGCCAACTCATCGTGGAG GCTCTCATGCTCACCCTTTTGCTGTGGAACCGTCCGTACGTTGCCAAGTCTAGCCAGTGGATCAACATTTCAGTC CAGGTGGTTCGTGTCTTGTCAATCGCGTGTGTGTTGATCTTCGTCGACGAGCTGGGGCTCTCGGAGACGACCAAA ACTGTTACCGGCATTGTCCTCATTGCTATTCAGTCGGGACTGAGTGGTATCTTGGCCATTCTTATTGCCACCAAC GCCATTATCCTCTGCATTCGCGAGAACCCTCATGCTAAACGGAAGAGGGAAGCTAACAAAATGAATCGTGATCTC GATGATTTGACCCCTCTTGACGCCCGTGAATCTCTGCTCATGGAGCATCCTCCTCGCAAGGATTACGCTGAAATG AGCAAGTTCAACTTTACCGGTCCTTACGAACCATACCGGGATCAACATGATTCGAAATCGCGACACAGCCCTACA GGTAGCACGGATCGGCTGGTTGATTCAAGCTACCCTCTTGAAGACGTCAATGGTCGAAGTATAAGTCGAGAAAGC CGCCGAAGCCATGACAGTCATGGCAGCCATGAAAACCCTGAAAAGCACCATGCCACGACCCCGGGTTATGGGTTC GCTTACTGA |
Gene | >Ani_SJS100_1|g6300.t1 ATGCGGCTCATTCCTTCTTTTTCGACCCTTACGGCGCTGGGTCTCCTGGCCACTCGAGCCCTCGCTGCCGATACC CTCAGCACCAATGGTCTGACAACTTGTATGTCAGACTCTGCTATCCAAGTCGACAAACTATCCGTCACCTATACC CGTTCTACTAGAGAAATCGTCTTCGATGTTTCCGGCACCAATGGGGTAGAACAGAATGTCACGGCAATCTTGACC ATCTATGCCTACGGCAGTCAACTCTACTCCGAAACGTTCGACCCGTGCAGCAGCAAATACTACGTGGAGCAACTC TGTCCCGTGGCTGCCGGTAGCTTCTCCGCGACTGGCACGCAGACCCTACCTGAATCGATCGCTAGTGAAATCCCC TCCATCGCCTTCGCCATCCCAGACTTGGATGGCCAAGTGAAGCTTCAATTGCTGTCCAAGACCGACAATGACGAG CTGGCATGCATCCAATCGGAACTGACCAACGGCAATACTATGCAGATCGCTGGTGTATCCTATGCTGCTGCTGGT GTGGCTGGTGCGGCATTGGCCGTGAGCGGGCTGTCAGCTCTGGGTGCTGTTGGCCACCCTGGTGCCGTCTCATCT AGTCCCAGCTTTGGTGATGTCGTGAGTTGGTTTCACACTATGGCCACTAATGGAATGCTCAGTGTCAGCTACCCG ACGGTGTACCGCAGCTTTTCGAAGAACTTTGCCTTCAGCACGGGTTTGATTCCTTGGGGTCAAATGCAGGAGTCC ATCGATAACTTCCGGAAGTCGACCGGCGGCAATCTCACCGACAACAGCTACCAGTATCTTCTCAATGCCACGCTC GTGTACTCTGACGGCACGAATTCTAGCTCAAAGTCGAAGCGAGGACTGGATCTGGTCACAGGCATGGCTAACCTA GCTGCGCGCGAGGTCTCGACTTCGTATAGCAGCAATACTACTTCGTCGTCTAACAGCACCAGTGACGACAGCAGT AGTTTCGAACATTTCGTCTCCGGAATTGAGGCCTATGCCGAACAGTTGACCATCCCTCAAGCCAACACCTTCATG ACCGTTCTGCTCATTTTCGCTATCCTAATTGCCGCTATTGCCGTTGGCATCTTGTTGCTCAAGGTCATCCTCGAA GTTTGGGCGCTCTACGGCTCTTTCCCGGACAAACTCACCAACTTCCGCAAAGACTACTGGGGTCTCCTGGGTCGC ACAATTACCAACTTGATTCTGCTGCTGTACGGCGTTTGGGTGATTTGGTGTGTCTATCAGCTCAGCAGTGGGGAT TCGTGGGCGGCGAAGCTCTTGGCTGCTGTGGCGCTTACAGTTTTCACGGCTGTGTTATTGTACTTTGGTCTCAAG ATCATGTTCGTGGCTCGGAAGTACAAGAAGACTGAAGGTGATGCGTCCCATTTGTACGACAACGATGAAACCTGG CGCAAGTACAGTCTTTTCTACGACAACTACAAAAAGGACTACTGGTGGGCATTCGTCCCTGCCATTGTATACATG TTTGCCAAGGGTTGCGTCATTGCTGCTGGAGATGGTCATGGGCTTGCCCAAAGCGCTGGCCAACTCATCGTGGAG GCTCTCATGCTCACCCTTTTGCTGTGGAACCGTCCGTACGTTGCCAAGTCTAGCCAGTGGATCAACATTTCAGTC CAGGTGGTTCGTGTCTTGTCAATCGCGTGTGTGTTGATCTTCGTCGACGAGCTGGGGCTCTCGGAGACGACCAAA ACTGTTACCGGCATTGTCCTCATTGCTATTCAGTCGGGACTGAGTGGTATCTTGGCCATTCTTATTGCCACCAAC GCCATTATCCTCTGCATTCGCGAGAACCCTCATGCTAAACGGAAGAGGGAAGCTAGTAAGTGAATTGGCCACTGT GTTCGACACTCTTTGGGTTGCTGACTATTGTGTTACCAGACAAAATGAATCGTGATCTCGATGATTTGACCCCTC TTGACGCCCGTGAATCTCTGCTCATGGAGCATCCTCCTCGCAAGGATTACGCTGAAATGAGCAAGTTCAACTTTA CCGGTCCTTACGAACCATACCGGGATCAACATGATTCGAAATCGCGACACAGCCCTACAGGTAGCACGGATCGGC TGGTTGATTCAAGCTACCCTCTTGAAGACGTCAATGGTCGAAGTATAAGTCGAGAAAGCCGCCGAAGCCATGACA GTCATGGCAGCCATGAAAACCCTGAAAAGCACCATGCCACGACCCCGGGTTATGGGTTCGCTTACTGA |