Protein ID | Ani_SJS100_1|g6252.t1 |
Gene name | |
Location | scaffold_038:63882..67684 |
Strand | + |
Gene length (bp) | 3802 |
Transcript length (bp) | 2706 |
Coding sequence length (bp) | 2706 |
Protein length (aa) | 902 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-11 | 351 | 405 |
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.2E-11 | 576 | 633 |
PF10378 | RRM | Putative RRM domain | 3.3E-05 | 139 | 168 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0003676 | nucleic acid binding | No |
GO:0005488 | binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0003674 | molecular_function | No |
Domain # | Start | End | Length |
---|---|---|---|
1 | 39 | 61 | 22 |
Orthofinder run ID | 3 |
Orthogroup | 6533 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g6252.t1 MMVQSEHNFTLALVSRPPQPAKPPKATKPAQTRPYWQSFCSVLFAVSVFFLISPLLFSGVIFGPGLFSLPPGHSY RVDCLGDNCFSHLNADSTGFSHGAYASNNIPLQGLTDRNARRANIPAINTSAPVSDNMAASGAAFDMNFTPLLPS QLLLGSPFQPGTPSAFASPQFANFGGFPQTNASSHAQNHQSHHQLGSPTQPSQNAGLYSGMMSTDGIGNSQMLGA PQSPVGGLGPMGNAAYGSPAASVTPGLLSGTSRTVYLGNIPAETSAEEILNHVRSGQIESVRLLPDKNCAFISFL DSNSATHFHSDAILKKLAIKGNDIKVGWGKASQVPTSVALAVQQSGASRNVYLGNLSEDMTEEELREELGKFGPI DTVKIVKEKAIGFVHFLSISNAMKAVSQLPQEAKWQAPRRVFYGKDRCAYVSKTQQQNAAQFLGIAPGYAHILNS ADRDLITNALAQQSVAAAAVATTAGGVNNLGNRTIYLGNIHPETTIEEICNVVRGGLLHHIRYIPDKHICFVTFI DPTSAASFYALSNLQGLMIHNRRLKIGWGKHSGPLPPAIALAVSGGASRNVYVGNLDETWSEERLRQDFSEYGEI ELVNTLREKSCAFVNFTNIANAIKAIEGMRNRDEYKRFKINFGKDRCGNPPRQAGNGGPQGRNGSGFEGPQSPSP ALNGFQQNLSQSGSGSSPTHPALSPAPGSTGSQNGQHHRHPLQTVSSPSGILNVGANNPLTMYLNQMSAQQAQEQ ENRLNDPMTLAGLQSQPQPPQQQSLYNGASTGELSNGSIEAPLHQHKPSTNGFLNVTNGSTGPGHHATASTSSLN VPRAQHSRAVSLPSFSQEPFGSVSSQPPRSGLAHQPQSSFSSFTSALGGLSHAGFGLAIQNESSLPGWAEEEIGA K* |
Coding | >Ani_SJS100_1|g6252.t1 ATGATGGTTCAGTCGGAGCACAACTTCACTCTTGCTTTAGTCTCTCGGCCTCCTCAACCCGCAAAGCCCCCTAAA GCAACTAAACCAGCGCAGACACGTCCTTATTGGCAGTCTTTCTGCTCCGTGCTCTTTGCCGTCTCTGTTTTCTTC CTTATTTCCCCCCTTCTCTTTTCGGGGGTGATCTTCGGGCCCGGCCTTTTTTCCCTCCCTCCTGGCCATTCCTAC CGTGTTGATTGCCTAGGGGACAATTGTTTTTCCCACCTCAACGCGGACAGCACCGGTTTCTCTCACGGAGCATAC GCCTCCAACAATATTCCCCTGCAGGGCCTAACGGACCGGAACGCTCGTCGAGCCAATATCCCTGCCATTAATACC TCTGCTCCCGTTTCGGACAACATGGCCGCCTCTGGCGCCGCGTTCGACATGAACTTCACTCCCCTACTACCCTCT CAGTTGTTGCTTGGTAGCCCCTTCCAGCCCGGTACTCCCTCCGCGTTCGCCTCGCCTCAATTCGCCAATTTCGGT GGCTTTCCTCAGACGAATGCCTCTTCACATGCCCAGAATCACCAGAGCCACCATCAGCTCGGAAGTCCGACCCAG CCCTCGCAGAATGCTGGCCTATATTCTGGTATGATGTCGACGGATGGTATAGGTAACTCTCAAATGCTGGGGGCC CCTCAATCTCCTGTTGGTGGTTTGGGGCCCATGGGCAACGCAGCGTACGGAAGTCCCGCTGCCTCGGTAACCCCT GGCTTGCTTTCGGGTACGAGCCGAACCGTATACCTAGGCAATATTCCGGCAGAAACCTCCGCGGAAGAAATCTTG AACCATGTTCGAAGCGGCCAAATTGAGTCGGTTCGTTTGCTTCCTGACAAGAACTGTGCTTTCATCTCCTTCCTG GACAGCAACTCCGCAACCCACTTTCACTCGGATGCAATCTTGAAGAAGCTTGCAATCAAGGGAAATGATATCAAG GTGGGTTGGGGCAAAGCATCTCAGGTGCCTACTTCGGTCGCTTTGGCTGTGCAGCAGTCCGGCGCATCACGGAAT GTATACTTGGGGAACCTGTCGGAGGACATGACAGAGGAAGAACTGCGGGAGGAGCTAGGAAAATTCGGCCCCATT GACACCGTCAAGATAGTCAAGGAGAAAGCGATTGGATTTGTCCACTTCTTGTCGATCAGCAATGCAATGAAGGCT GTTTCTCAACTTCCTCAGGAGGCTAAGTGGCAGGCACCCAGGCGGGTATTCTACGGCAAAGATCGGTGCGCTTAT GTTTCCAAAACTCAGCAGCAAAATGCAGCTCAGTTCTTGGGCATTGCCCCTGGTTATGCACACATTCTCAATTCG GCGGACCGTGATTTGATCACCAACGCACTCGCTCAGCAATCTGTCGCCGCCGCGGCTGTGGCCACCACAGCCGGT GGAGTCAACAACTTGGGCAACCGGACCATCTATTTGGGCAACATTCACCCCGAAACGACTATCGAGGAGATTTGC AATGTCGTGCGTGGTGGTTTGCTACATCATATTCGCTACATTCCCGATAAGCATATCTGCTTTGTCACTTTCATT GATCCTACGTCAGCCGCGTCCTTTTACGCCCTGAGCAACCTGCAGGGCCTCATGATTCATAACCGTCGTCTGAAG ATTGGCTGGGGTAAGCATTCCGGTCCTCTTCCGCCGGCCATTGCCCTGGCCGTGAGTGGCGGAGCTTCTCGAAAT GTCTATGTCGGTAACCTCGATGAGACCTGGTCGGAGGAGCGCCTTCGCCAAGACTTCTCCGAGTATGGAGAGATC GAGCTTGTCAACACGCTCCGTGAAAAGAGCTGCGCATTCGTCAATTTTACCAACATTGCCAATGCCATTAAGGCA ATTGAAGGGATGCGGAACCGGGATGAATACAAGCGATTCAAGATCAATTTCGGGAAGGATCGCTGCGGTAATCCC CCGCGTCAAGCCGGCAATGGAGGTCCGCAGGGTCGCAATGGGTCCGGGTTTGAGGGGCCTCAGTCACCTTCCCCA GCTTTGAATGGCTTCCAGCAGAACCTAAGCCAATCTGGCTCGGGCTCTAGCCCGACTCATCCTGCCCTCTCTCCT GCTCCTGGGTCTACGGGTTCTCAGAACGGCCAGCACCACAGGCATCCCCTGCAGACGGTCTCATCCCCATCTGGC ATTCTAAATGTCGGTGCCAACAATCCGTTGACCATGTACCTCAACCAAATGTCCGCCCAGCAAGCCCAGGAGCAG GAAAACCGGCTGAACGACCCCATGACCTTGGCTGGTCTTCAGTCCCAGCCTCAACCGCCGCAACAGCAGTCGCTC TACAATGGCGCCAGCACTGGTGAGCTTTCCAATGGCAGCATCGAAGCCCCATTGCATCAGCACAAGCCGTCGACC AACGGATTCTTGAACGTAACCAATGGATCTACGGGCCCCGGCCACCACGCTACCGCTAGCACCAGCAGCCTGAAT GTACCACGGGCGCAGCATTCCCGGGCCGTGAGTTTGCCTTCGTTCTCTCAGGAGCCTTTCGGATCTGTTTCAAGC CAGCCTCCCCGCTCCGGACTTGCTCATCAGCCGCAAAGCAGCTTTTCAAGCTTCACCTCTGCCCTAGGCGGTCTC AGCCACGCCGGCTTCGGATTGGCCATCCAGAACGAGAGTTCGCTGCCCGGCTGGGCTGAGGAGGAGATTGGGGCC AAATAA |
Transcript | >Ani_SJS100_1|g6252.t1 ATGATGGTTCAGTCGGAGCACAACTTCACTCTTGCTTTAGTCTCTCGGCCTCCTCAACCCGCAAAGCCCCCTAAA GCAACTAAACCAGCGCAGACACGTCCTTATTGGCAGTCTTTCTGCTCCGTGCTCTTTGCCGTCTCTGTTTTCTTC CTTATTTCCCCCCTTCTCTTTTCGGGGGTGATCTTCGGGCCCGGCCTTTTTTCCCTCCCTCCTGGCCATTCCTAC CGTGTTGATTGCCTAGGGGACAATTGTTTTTCCCACCTCAACGCGGACAGCACCGGTTTCTCTCACGGAGCATAC GCCTCCAACAATATTCCCCTGCAGGGCCTAACGGACCGGAACGCTCGTCGAGCCAATATCCCTGCCATTAATACC TCTGCTCCCGTTTCGGACAACATGGCCGCCTCTGGCGCCGCGTTCGACATGAACTTCACTCCCCTACTACCCTCT CAGTTGTTGCTTGGTAGCCCCTTCCAGCCCGGTACTCCCTCCGCGTTCGCCTCGCCTCAATTCGCCAATTTCGGT GGCTTTCCTCAGACGAATGCCTCTTCACATGCCCAGAATCACCAGAGCCACCATCAGCTCGGAAGTCCGACCCAG CCCTCGCAGAATGCTGGCCTATATTCTGGTATGATGTCGACGGATGGTATAGGTAACTCTCAAATGCTGGGGGCC CCTCAATCTCCTGTTGGTGGTTTGGGGCCCATGGGCAACGCAGCGTACGGAAGTCCCGCTGCCTCGGTAACCCCT GGCTTGCTTTCGGGTACGAGCCGAACCGTATACCTAGGCAATATTCCGGCAGAAACCTCCGCGGAAGAAATCTTG AACCATGTTCGAAGCGGCCAAATTGAGTCGGTTCGTTTGCTTCCTGACAAGAACTGTGCTTTCATCTCCTTCCTG GACAGCAACTCCGCAACCCACTTTCACTCGGATGCAATCTTGAAGAAGCTTGCAATCAAGGGAAATGATATCAAG GTGGGTTGGGGCAAAGCATCTCAGGTGCCTACTTCGGTCGCTTTGGCTGTGCAGCAGTCCGGCGCATCACGGAAT GTATACTTGGGGAACCTGTCGGAGGACATGACAGAGGAAGAACTGCGGGAGGAGCTAGGAAAATTCGGCCCCATT GACACCGTCAAGATAGTCAAGGAGAAAGCGATTGGATTTGTCCACTTCTTGTCGATCAGCAATGCAATGAAGGCT GTTTCTCAACTTCCTCAGGAGGCTAAGTGGCAGGCACCCAGGCGGGTATTCTACGGCAAAGATCGGTGCGCTTAT GTTTCCAAAACTCAGCAGCAAAATGCAGCTCAGTTCTTGGGCATTGCCCCTGGTTATGCACACATTCTCAATTCG GCGGACCGTGATTTGATCACCAACGCACTCGCTCAGCAATCTGTCGCCGCCGCGGCTGTGGCCACCACAGCCGGT GGAGTCAACAACTTGGGCAACCGGACCATCTATTTGGGCAACATTCACCCCGAAACGACTATCGAGGAGATTTGC AATGTCGTGCGTGGTGGTTTGCTACATCATATTCGCTACATTCCCGATAAGCATATCTGCTTTGTCACTTTCATT GATCCTACGTCAGCCGCGTCCTTTTACGCCCTGAGCAACCTGCAGGGCCTCATGATTCATAACCGTCGTCTGAAG ATTGGCTGGGGTAAGCATTCCGGTCCTCTTCCGCCGGCCATTGCCCTGGCCGTGAGTGGCGGAGCTTCTCGAAAT GTCTATGTCGGTAACCTCGATGAGACCTGGTCGGAGGAGCGCCTTCGCCAAGACTTCTCCGAGTATGGAGAGATC GAGCTTGTCAACACGCTCCGTGAAAAGAGCTGCGCATTCGTCAATTTTACCAACATTGCCAATGCCATTAAGGCA ATTGAAGGGATGCGGAACCGGGATGAATACAAGCGATTCAAGATCAATTTCGGGAAGGATCGCTGCGGTAATCCC CCGCGTCAAGCCGGCAATGGAGGTCCGCAGGGTCGCAATGGGTCCGGGTTTGAGGGGCCTCAGTCACCTTCCCCA GCTTTGAATGGCTTCCAGCAGAACCTAAGCCAATCTGGCTCGGGCTCTAGCCCGACTCATCCTGCCCTCTCTCCT GCTCCTGGGTCTACGGGTTCTCAGAACGGCCAGCACCACAGGCATCCCCTGCAGACGGTCTCATCCCCATCTGGC ATTCTAAATGTCGGTGCCAACAATCCGTTGACCATGTACCTCAACCAAATGTCCGCCCAGCAAGCCCAGGAGCAG GAAAACCGGCTGAACGACCCCATGACCTTGGCTGGTCTTCAGTCCCAGCCTCAACCGCCGCAACAGCAGTCGCTC TACAATGGCGCCAGCACTGGTGAGCTTTCCAATGGCAGCATCGAAGCCCCATTGCATCAGCACAAGCCGTCGACC AACGGATTCTTGAACGTAACCAATGGATCTACGGGCCCCGGCCACCACGCTACCGCTAGCACCAGCAGCCTGAAT GTACCACGGGCGCAGCATTCCCGGGCCGTGAGTTTGCCTTCGTTCTCTCAGGAGCCTTTCGGATCTGTTTCAAGC CAGCCTCCCCGCTCCGGACTTGCTCATCAGCCGCAAAGCAGCTTTTCAAGCTTCACCTCTGCCCTAGGCGGTCTC AGCCACGCCGGCTTCGGATTGGCCATCCAGAACGAGAGTTCGCTGCCCGGCTGGGCTGAGGAGGAGATTGGGGCC AAATAA |
Gene | >Ani_SJS100_1|g6252.t1 ATGATGGTTCAGGTTCACTATGGAGCATTGACTGGTTGAGGAATCCTTCTGCCGCAAATCCCCTTTCTTACCCAC CTGCTTTTTTCCCCCCTTTGATACATCGATTACATACTTGCTGCTTTGTCTCGGCCCATTCCTTGCTTACCTGAC CCTGTACCAGTCTGTCTCCTTTTGGCTAGTTCCTCGCGTTCTTCACTATCTGGGATTGTTGGTTCTCCCACAACA GTTCCCTTGGTTCGAGTGTGACTTTTGTTTAATTACTCGGGTTGTTGATGATAATTTTCTGATAAGCTTTCTTTT GTTTGATTACTGTTTACTTTTCAGTTTCATAAGATAGTTTGGGGAAAGCACAAGAGAAGAATTGGAGGGTGTTGT TCTTGTTCTTTTTTCGCGGATATCATTCATCATTATCTTTATTTTCCTCTCACTATTTATCGCGCCTGTGTCCCT CAAACACGCGCCCCCCTTTTTCCCCTACCAGGGGCCCTCTTTTTTCCTCACCCTTCTTTTCCGCTTAACTTGTAC TGGCGGCTGTAATCTTTTAGTTTAATTGTCCTTTGCAATTACTTTCTCTCTTTCCCTTTGCTTTTCTTTACTCTT CGTCTACTGTTATTACCACTTATCCCTTTTCAGTTGGATTGTCGGCGGCCTTTGGATACCTTCTTTGTCAACGTT TGGGTCCGCTGCAACCTGGCACTCTGGCAGGTCTGGGGCGTTCTCCCTCTCCAGTACTCCGTACTCTCATTTGAC AGGGCCATCTTTATTTCTATCATTATTTTTATCTTTTTATCTTTGTCCTTTCCATTCTAATCTCGGTTGGTTCTC AGTCGGAGCACAACTTCACTCTTGCTTTAGTCTCTCGGCCTCCTCAACCCGCAAAGCCCCCTAAAGCAACTAAAC CAGCGCAGGTTTGTCTCCGTTTCCACCAACTCAACCACTCATTGTCCATGCACATTCCAATTGACTAGCGGGATC CCTTCTAGACACGTCCTTATTGGCAGTCTTTCTGCTCCGTGCTCTTTGCCGTCCTTTCTGCTCTTCTTTCTCATT TTGATTACCCTCATTCTGGCCTCTCCAGGTCTCTGTTTTCTTCCTTATTTCCCCCCTTCTCTTTTCGGGGGTGAT CTTCGGGCCCGGCCTTTTTTCCCTCCCTCCTGGCCATTCCTACCGTGTTGATTGCCTAGTACGTCTCCCCCTTGA CTAAGTGATATCGTCTATTTCTCATCGACCACGAACTCATCTTATTCCGTTTCTCTTCATTAGGGGGACAATTGT GTCCTACTCGCTCCCTCTCCTCGCCATGCAAACCTCCGATGCAAGCATTCCGAGTCGTCTGATCCCTTCCAAGTT TTCCCACCTCAACGCGGACAGCACCGGTTTCTCTCACGGAGCATACGCCTCCAACAATATTCCCCTGCAGGGCCT AACGGACCGGAACGCTCGTCGAGCCAATATCCCTGCCATTAATACCTCTGCTCCCGTTTCGGACAACATGGCCGC CTCTGGCGCCGCGTTCGACATGAACTTCACTCCCCTACTACCCTCTCAGTTGTTGCTTGGTAGCCCCTTCCAGCC CGGTACTCCCTCCGCGTTCGCCTCGCCTCAATTCGCCAATTTCGGTGGCTTTCCTCAGACGAATGCCTCTTCACA TGCCCAGAATCACCAGAGCCACCATCAGCTCGGAAGTCCGACCCAGCCCTCGCAGAATGCTGGCCTATATTCTGG TATGATGTCGACGGATGGTATAGGTAACTCTCAAATGCTGGGGGCCCCTCAATCTCCTGTTGGTGGTTTGGGGCC CATGGGCAACGCAGCGTACGGAAGTCCCGCTGCCTCGGTAACCCCTGGCTTGCTTTCGGGTACGAGCCGAACCGT ATACCTAGGCAATATTCCGGCAGAAACCTCCGCGGAAGAAATCTTGAACCATGTTCGAAGCGGCCAAATTGAGTC GGTTCGTTTGCTTCCTGACAAGAACTGTGCTTTCATCTCCTTCCTGGACAGCAACTCCGCAACCCACTTTCACTC GGATGCAATCTTGAAGAAGCTTGCAATCAAGGGAAATGATATCAAGGTGGGTTGGGGCAAAGCATCTCAGGTGCC TACTTCGGTCGCTTTGGCTGTGCAGCAGTCCGGCGCATCACGGAATGTATACTTGGGGAACCTGTCGGAGGACAT GACAGAGGAAGAACTGCGGGAGGAGCTAGGAAAATTCGGCCCCATTGACACCGTCAAGATAGTCAAGGAGAAAGC GATTGGATTTGTCCACTTCTTGTCGATCAGCAATGCAATGAAGGCTGTTTCTCAACTTCCTCAGGAGGCTAAGTG GCAGGCACCCAGGCGGGTATTCTACGGCAAAGATCGGTGCGCTTATGTTTCCAAAACTCAGCAGCAAAATGCAGC TCAGTTCTTGGGCATTGCCCCTGGTTATGCACACATTCTCAATTCGGCGGACCGTGATTTGATCACCAACGCACT CGCTCAGCAATCTGTCGCCGCCGCGGCTGTGGCCACCACAGCCGGTGGAGTCAACAACTTGGGCAACCGGACCAT CTATTTGGGCAACATTCACCCCGAAACGACTATCGAGGAGATTTGCAATGTCGTGCGTGGTGGTTTGCTACATCA TATTCGCTACATTCCCGATAAGCATATCTGCTTTGTCACTTTCATTGATCCTACGTCAGCCGCGTCCTTTTACGC CCTGAGCAACCTGCAGGGCCTCATGATTCATAACCGTCGTCTGAAGATTGGCTGGGGTAAGCATTCCGGTCCTCT TCCGCCGGCCATTGCCCTGGCCGTGAGTGGCGGAGCTTCTCGAAATGTCTATGTCGGTAACCTCGATGAGACCTG GTCGGAGGAGCGCCTTCGCCAAGACTTCTCCGAGTATGGAGAGATCGAGCTTGTCAACACGCTCCGTGAAAAGAG CTGCGCATTCGTCAATTTTACCAACATTGCCAATGCCATTAAGGCAATTGAAGGGATGCGGAACCGGGATGAATA CAAGCGATTCAAGATCAATTTCGGGAAGGATCGCTGCGGTAATCCCCCGCGTCAAGCCGGCAATGGAGGTCCGCA GGGTCGCAATGGGTCCGGGTTTGAGGGGCCTCAGTCACCTTCCCCAGCTTTGAATGGCTTCCAGCAGAACCTAAG CCAATCTGGCTCGGGCTCTAGCCCGACTCATCCTGCCCTCTCTCCTGCTCCTGGGTCTACGGGTTCTCAGAACGG CCAGCACCACAGGCATCCCCTGCAGACGGTCTCATCCCCATCTGGCATTCTAAATGTCGGTGCCAACAATCCGTT GACCATGTACCTCAACCAAATGTCCGCCCAGCAAGCCCAGGAGCAGGAAAACCGGCTGAACGACCCCATGACCTT GGCTGGTCTTCAGTCCCAGCCTCAACCGCCGCAACAGCAGTCGCTCTACAATGGCGCCAGCACTGGTGAGCTTTC CAATGGCAGCATCGAAGCCCCATTGCATCAGCACAAGCCGTCGACCAACGGATTCTTGAACGTAACCAATGGATC TACGGGCCCCGGCCACCACGCTACCGCTAGCACCAGCAGCCTGAATGTACCACGGGCGCAGCATTCCCGGGCCGT GAGTTTGCCTTCGTTCTCTCAGGAGCCTTTCGGATCTGTTTCAAGCCAGCCTCCCCGCTCCGGACTTGCTCATCA GCCGCAAAGCAGCTTTTCAAGCTTCACCTCTGCCCTAGGCGGTCTCAGCCACGCCGGCTTCGGATTGGCCATCCA GAACGAGAGTTCGCTGCCCGGCTGGGCTGAGGAGGAGATTGGGGCCAAATAA |