© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g6245.t1 |
| Gene name | |
| Location | scaffold_038:38517..40940 |
| Strand | + |
| Gene length (bp) | 2423 |
| Transcript length (bp) | 2358 |
| Coding sequence length (bp) | 2358 |
| Protein length (aa) | 786 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05764 | YL1 | YL1 nuclear protein | 2.2E-61 | 23 | 261 |
| PF08265 | YL1_C | YL1 nuclear protein C-terminal domain | 1.5E-11 | 640 | 668 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0006338 | chromatin remodeling | Yes |
| GO:0043486 | histone exchange | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0050794 | regulation of cellular process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043226 | organelle | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0050789 | regulation of biological process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0016043 | cellular component organization | No |
| GO:0006325 | chromatin organization | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0071824 | protein-DNA complex subunit organization | No |
| GO:0008150 | biological_process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0034728 | nucleosome organization | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| YL1 nuclear protein |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g6245.t1 MADDYESPSSPEEAPVESLIQGRAKRSTAGLHMSALLDAAADDDLALLFEEVEDDNEFAMDVEEEGGEEDDMRFE SSSDDEDDQGPESRADDMEGEQQLQKEERQEKKKKRAREDLRFKIASKKVKIDPTAVSTVPTPRPKKKSERISWI PTPEEGPTRSSSRRQTMQNKELTHARLKDSEEKRIRLIATMEEAAKRKAQFKPKEMTQAERLAEAERVERHNSKS LNRWEEMEKRKAEERRAKIEALQNRRLEGPVMSYWSGIATWVNGRLTRIGKVDVTPKPEKEDNNTRKKSKKTDKE NKIVIEQNPTENPIVVGSATSQTAPPPTQTEGSTLPQTSGDGEPAKPNQNPEQQQTSSEPTQTNGAISQEKPVDT PVEAPTDTPKKAPTNEPTDTPMEEPTPSQVNTEAPAAADPVQPATTAVNDESATEAVPESGSSKVEDEKKEEATE TKAPDAAPEEGTSDEKPNVQQKDDTIHAVDAQQPTSQQSGEKPTLESEQQPDRDPPSAAAKSDDASKETVPDPTA AAEAVSEPARMQQELSPTTVPDVTVAPSQTNPQKETSNQTQPGQEAPEVHTDQPVVVTEETPQPEVPEAPPVIEQ TGRTLTVLENFDDKTAQSREFSIYFNAKKPPRLTKISSSLCVITSLPSRYRDPETSLPFANSHAYNEIRHTVAQK YSWSPMLGCYVGPVGVAARGVPARFLGGPEAKEEEAKENGKGDKGASNEATTTTDKTEKKKEKENEAKTSTGEAP PSTSSPSAAAAPASAPTPTATPVAATVGDPMDVDK* |
| Coding | >Ani_SJS100_1|g6245.t1 ATGGCAGATGATTACGAAAGCCCCTCCTCCCCGGAGGAGGCGCCAGTCGAGTCGCTCATTCAGGGGCGTGCGAAG CGAAGCACAGCCGGCCTTCATATGTCAGCTCTCCTGGACGCCGCTGCCGACGATGATCTTGCGCTCTTGTTCGAG GAAGTGGAGGATGACAACGAGTTTGCGATGGATGTGGAGGAAGAAGGGGGAGAAGAGGATGATATGCGCTTCGAG TCTTCCTCGGATGATGAGGATGATCAAGGACCTGAGTCTCGAGCTGACGACATGGAAGGGGAGCAACAACTACAG AAGGAGGAGCGACAAGAGAAGAAAAAAAAGAGAGCGCGAGAAGACCTTCGATTCAAGATAGCCAGCAAGAAGGTG AAAATCGATCCTACTGCTGTGTCTACAGTGCCTACTCCTCGCCCCAAGAAGAAGTCAGAGCGTATCTCATGGATC CCCACGCCGGAAGAAGGGCCCACGCGATCATCCTCTCGTCGCCAGACTATGCAGAACAAGGAACTTACGCATGCA CGCCTGAAGGACAGCGAAGAGAAGCGCATCCGCCTCATTGCCACCATGGAGGAGGCAGCTAAAAGGAAGGCCCAG TTCAAGCCGAAGGAGATGACGCAAGCCGAGCGTCTTGCAGAAGCCGAAAGGGTGGAGAGGCATAACAGCAAGAGT CTTAACCGATGGGAAGAAATGGAAAAGAGGAAGGCTGAAGAAAGACGTGCGAAGATCGAGGCCCTTCAAAATCGC CGCCTTGAAGGTCCGGTTATGTCGTACTGGAGTGGCATAGCAACCTGGGTTAATGGTCGCTTAACGCGCATTGGC AAGGTTGATGTAACGCCAAAACCGGAGAAGGAGGATAATAATACACGCAAGAAAAGCAAGAAGACGGACAAAGAG AATAAAATTGTGATAGAGCAAAACCCGACCGAGAATCCTATTGTTGTTGGTTCTGCCACGTCGCAAACAGCCCCT CCTCCCACCCAAACTGAGGGTTCTACGCTACCACAAACATCCGGCGACGGAGAGCCTGCAAAACCGAACCAAAAC CCTGAACAGCAGCAAACAAGCTCTGAGCCCACTCAGACCAATGGCGCAATATCCCAAGAGAAACCCGTTGATACA CCAGTGGAGGCACCCACAGATACGCCAAAGAAGGCACCCACGAATGAACCCACCGATACGCCAATGGAGGAACCC ACCCCCTCTCAGGTGAACACAGAGGCTCCTGCTGCTGCTGATCCTGTACAGCCTGCCACAACTGCAGTCAACGAC GAGTCTGCTACAGAAGCAGTGCCAGAATCAGGTTCATCAAAAGTCGAAGATGAAAAGAAAGAGGAAGCTACTGAG ACCAAGGCTCCAGATGCAGCTCCGGAAGAGGGCACGTCAGATGAGAAGCCAAATGTACAACAAAAAGACGACACT ATACACGCAGTTGACGCTCAACAGCCCACGTCGCAGCAGTCTGGCGAGAAGCCTACGCTAGAATCCGAACAGCAG CCTGACCGAGATCCACCATCTGCGGCCGCAAAGTCCGATGACGCATCGAAGGAAACAGTCCCTGACCCAACCGCA GCCGCTGAAGCTGTATCTGAGCCTGCTAGGATGCAGCAGGAGCTGTCTCCTACTACAGTACCAGATGTTACTGTC GCCCCTTCGCAGACTAACCCGCAGAAGGAGACGTCCAATCAAACACAACCGGGCCAAGAGGCTCCGGAGGTGCAT ACAGACCAGCCAGTTGTTGTGACTGAGGAAACCCCACAACCGGAGGTTCCAGAGGCCCCTCCAGTTATCGAGCAA ACAGGACGAACCCTTACGGTGTTGGAGAACTTTGATGACAAGACCGCCCAAAGTCGCGAGTTCAGTATCTACTTC AACGCAAAGAAACCTCCTAGGCTAACCAAAATCTCTTCATCCCTCTGCGTTATTACATCACTTCCCTCGCGCTAT CGGGATCCCGAGACCTCCCTGCCCTTCGCAAACTCACATGCTTACAATGAAATCCGACATACGGTGGCACAAAAG TACAGTTGGAGCCCGATGCTGGGATGCTACGTTGGTCCTGTCGGAGTCGCTGCGCGAGGAGTACCGGCGCGGTTC CTCGGCGGCCCTGAAGCAAAAGAAGAAGAAGCAAAAGAGAACGGAAAGGGCGATAAAGGCGCTAGCAACGAGGCC ACCACTACTACTGACAAAACAGAAAAAAAAAAAGAGAAAGAGAACGAAGCAAAGACTTCCACCGGAGAGGCTCCT CCATCTACATCCAGCCCTTCAGCTGCAGCTGCACCCGCTTCCGCACCCACACCAACAGCCACCCCCGTTGCAGCT ACCGTGGGCGATCCAATGGATGTCGATAAATGA |
| Transcript | >Ani_SJS100_1|g6245.t1 ATGGCAGATGATTACGAAAGCCCCTCCTCCCCGGAGGAGGCGCCAGTCGAGTCGCTCATTCAGGGGCGTGCGAAG CGAAGCACAGCCGGCCTTCATATGTCAGCTCTCCTGGACGCCGCTGCCGACGATGATCTTGCGCTCTTGTTCGAG GAAGTGGAGGATGACAACGAGTTTGCGATGGATGTGGAGGAAGAAGGGGGAGAAGAGGATGATATGCGCTTCGAG TCTTCCTCGGATGATGAGGATGATCAAGGACCTGAGTCTCGAGCTGACGACATGGAAGGGGAGCAACAACTACAG AAGGAGGAGCGACAAGAGAAGAAAAAAAAGAGAGCGCGAGAAGACCTTCGATTCAAGATAGCCAGCAAGAAGGTG AAAATCGATCCTACTGCTGTGTCTACAGTGCCTACTCCTCGCCCCAAGAAGAAGTCAGAGCGTATCTCATGGATC CCCACGCCGGAAGAAGGGCCCACGCGATCATCCTCTCGTCGCCAGACTATGCAGAACAAGGAACTTACGCATGCA CGCCTGAAGGACAGCGAAGAGAAGCGCATCCGCCTCATTGCCACCATGGAGGAGGCAGCTAAAAGGAAGGCCCAG TTCAAGCCGAAGGAGATGACGCAAGCCGAGCGTCTTGCAGAAGCCGAAAGGGTGGAGAGGCATAACAGCAAGAGT CTTAACCGATGGGAAGAAATGGAAAAGAGGAAGGCTGAAGAAAGACGTGCGAAGATCGAGGCCCTTCAAAATCGC CGCCTTGAAGGTCCGGTTATGTCGTACTGGAGTGGCATAGCAACCTGGGTTAATGGTCGCTTAACGCGCATTGGC AAGGTTGATGTAACGCCAAAACCGGAGAAGGAGGATAATAATACACGCAAGAAAAGCAAGAAGACGGACAAAGAG AATAAAATTGTGATAGAGCAAAACCCGACCGAGAATCCTATTGTTGTTGGTTCTGCCACGTCGCAAACAGCCCCT CCTCCCACCCAAACTGAGGGTTCTACGCTACCACAAACATCCGGCGACGGAGAGCCTGCAAAACCGAACCAAAAC CCTGAACAGCAGCAAACAAGCTCTGAGCCCACTCAGACCAATGGCGCAATATCCCAAGAGAAACCCGTTGATACA CCAGTGGAGGCACCCACAGATACGCCAAAGAAGGCACCCACGAATGAACCCACCGATACGCCAATGGAGGAACCC ACCCCCTCTCAGGTGAACACAGAGGCTCCTGCTGCTGCTGATCCTGTACAGCCTGCCACAACTGCAGTCAACGAC GAGTCTGCTACAGAAGCAGTGCCAGAATCAGGTTCATCAAAAGTCGAAGATGAAAAGAAAGAGGAAGCTACTGAG ACCAAGGCTCCAGATGCAGCTCCGGAAGAGGGCACGTCAGATGAGAAGCCAAATGTACAACAAAAAGACGACACT ATACACGCAGTTGACGCTCAACAGCCCACGTCGCAGCAGTCTGGCGAGAAGCCTACGCTAGAATCCGAACAGCAG CCTGACCGAGATCCACCATCTGCGGCCGCAAAGTCCGATGACGCATCGAAGGAAACAGTCCCTGACCCAACCGCA GCCGCTGAAGCTGTATCTGAGCCTGCTAGGATGCAGCAGGAGCTGTCTCCTACTACAGTACCAGATGTTACTGTC GCCCCTTCGCAGACTAACCCGCAGAAGGAGACGTCCAATCAAACACAACCGGGCCAAGAGGCTCCGGAGGTGCAT ACAGACCAGCCAGTTGTTGTGACTGAGGAAACCCCACAACCGGAGGTTCCAGAGGCCCCTCCAGTTATCGAGCAA ACAGGACGAACCCTTACGGTGTTGGAGAACTTTGATGACAAGACCGCCCAAAGTCGCGAGTTCAGTATCTACTTC AACGCAAAGAAACCTCCTAGGCTAACCAAAATCTCTTCATCCCTCTGCGTTATTACATCACTTCCCTCGCGCTAT CGGGATCCCGAGACCTCCCTGCCCTTCGCAAACTCACATGCTTACAATGAAATCCGACATACGGTGGCACAAAAG TACAGTTGGAGCCCGATGCTGGGATGCTACGTTGGTCCTGTCGGAGTCGCTGCGCGAGGAGTACCGGCGCGGTTC CTCGGCGGCCCTGAAGCAAAAGAAGAAGAAGCAAAAGAGAACGGAAAGGGCGATAAAGGCGCTAGCAACGAGGCC ACCACTACTACTGACAAAACAGAAAAAAAAAAAGAGAAAGAGAACGAAGCAAAGACTTCCACCGGAGAGGCTCCT CCATCTACATCCAGCCCTTCAGCTGCAGCTGCACCCGCTTCCGCACCCACACCAACAGCCACCCCCGTTGCAGCT ACCGTGGGCGATCCAATGGATGTCGATAAATGA |
| Gene | >Ani_SJS100_1|g6245.t1 ATGGCAGATGATTACGAAAGCCCCTCCTCCCCGGAGGAGGCGCCAGTCGAGTCGCTCATTCAGGGGCGTGCGAAG CGAAGCACAGCCGGCCTTCATATGTCAGCTCTCCTGGACGCCGCTGCCGACGATGATCTTGCGCTCTTGTTCGAG GAAGTGGAGGATGACAACGAGTTTGCGATGGATGTGGAGGAAGAAGGGGGAGAAGAGGATGATATGCGCTTCGAG TCTTCCTCGGATGATGAGGATGATCAAGGACCTGAGTCTCGAGCTGACGACATGGAAGGGGAGCAACAACTACAG AAGGAGGAGCGACAAGAGAAGAAAAAAAAGAGAGCGCGAGAAGACCTTCGATTCAAGATAGCCAGCAAGAAGGTG AAAATCGATCCTACTGCTGTGTCTACAGTGCCTACTCCTCGCCCCAAGAAGAAGTCAGAGCGTATCTCATGGATC CCCACGCCGGAAGAAGGGCCCACGCGATCATCCTCTCGTCGCCAGACTATGCAGAACAAGGAACTTACGCATGCA CGCCTGAAGGACAGCGAAGAGAAGCGCATCCGCCTCATTGCCACCATGGAGGAGGCAGCTAAAAGGAAGGCCCAG TTCAAGCCGAAGGAGATGACGCAAGCCGAGCGTCTTGCAGAAGCCGAAAGGGTGGAGAGGCATAACAGCAAGAGT CTTAACCGATGGGAAGAAATGGAAAAGAGGAAGGCTGAAGAAAGACGTGCGAAGATCGAGGCCCTTCAAAATCGC CGCCTTGAAGGTCCGGTTATGTCGTACTGGAGTGGCATAGCAACCTGGGTTAATGGTCGCTTAACGCGCATTGGC AAGGTTGATGTAACGCCAAAACCGGAGAAGGAGGATAATAATACACGCAAGAAAAGCAAGAAGACGGACAAAGAG AATAAAATTGTGATAGAGCAAAACCCGACCGAGAATCCTATTGTTGTTGGTTCTGCCACGTCGCAAACAGCCCCT CCTCCCACCCAAACTGAGGGTTCTACGCTACCACAAACATCCGGCGACGGAGAGCCTGCAAAACCGAACCAAAAC CCTGAACAGCAGCAAACAAGCTCTGAGCCCACTCAGACCAATGGCGCAATATCCCAAGAGAAACCCGTTGATACA CCAGTGGAGGCACCCACAGATACGCCAAAGAAGGCACCCACGAATGAACCCACCGATACGCCAATGGAGGAACCC ACCCCCTCTCAGGTGAACACAGAGGCTCCTGCTGCTGCTGATCCTGTACAGCCTGCCACAACTGCAGTCAACGAC GAGTCTGCTACAGAAGCAGTGCCAGAATCAGGTTCATCAAAAGTCGAAGATGAAAAGAAAGAGGAAGCTACTGAG ACCAAGGCTCCAGATGCAGCTCCGGAAGAGGGCACGTCAGATGAGAAGCCAAATGTACAACAAAAAGACGACACT ATACACGCAGTTGACGCTCAACAGCCCACGTCGCAGCAGTCTGGCGAGAAGCCTACGCTAGAATCCGAACAGCAG CCTGACCGAGATCCACCATCTGCGGCCGCAAAGTCCGATGACGCATCGAAGGAAACAGTCCCTGACCCAACCGCA GCCGCTGAAGCTGTATCTGAGCCTGCTAGGATGCAGCAGGAGCTGTCTCCTACTACAGTACCAGATGTTACTGTC GCCCCTTCGCAGACTAACCCGCAGAAGGAGACGTCCAATCAAACACAACCGGGCCAAGAGGCTCCGGAGGTGCAT ACAGACCAGCCAGTTGTTGTGACTGAGGAAACCCCACAACCGGAGGTTCCAGAGGCCCCTCCAGTTATCGAGCAA ACAGGACGAACCCTTACGGTGTTGGAGAACTTTGATGACAAGACCGCCCAAAGTCGCGAGTTCAGTATCTACTTC AACGCAAAGAAACCTCCTAGGCTAACCAGTATGTAATGCACCTATACCTCCACTGCATGCACGAACACATTGGAC ATGCTAACAGCAAAACAGAAATCTCTTCATCCCTCTGCGTTATTACATCACTTCCCTCGCGCTATCGGGATCCCG AGACCTCCCTGCCCTTCGCAAACTCACATGCTTACAATGAAATCCGACATACGGTGGCACAAAAGTACAGTTGGA GCCCGATGCTGGGATGCTACGTTGGTCCTGTCGGAGTCGCTGCGCGAGGAGTACCGGCGCGGTTCCTCGGCGGCC CTGAAGCAAAAGAAGAAGAAGCAAAAGAGAACGGAAAGGGCGATAAAGGCGCTAGCAACGAGGCCACCACTACTA CTGACAAAACAGAAAAAAAAAAAGAGAAAGAGAACGAAGCAAAGACTTCCACCGGAGAGGCTCCTCCATCTACAT CCAGCCCTTCAGCTGCAGCTGCACCCGCTTCCGCACCCACACCAACAGCCACCCCCGTTGCAGCTACCGTGGGCG ATCCAATGGATGTCGATAAATGA |