Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g6220.t1
Gene name
Location	scaffold_037:270420..271052
Strand	-
Gene length (bp)	632
Transcript length (bp)	552
Coding sequence length (bp)	552
Protein length (aa)	184

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00125	Histone	Core histone H2A/H2B/H3/H4	1.3E-42	44	176

GO

GO Term	Description	Terminal node
GO:0003677	DNA binding	Yes
GO:0003676	nucleic acid binding	No
GO:0005488	binding	No
GO:1901363	heterocyclic compound binding	No
GO:0097159	organic cyclic compound binding	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g6220.t1 MPPKTGGRGRKSIVAAPRQSTAGDRAAASSSKAAATTSPAAKKVRKSTGPARGGKRPAGKAPRESDVQPGDPTPQ GRVRRYKPGTVALKEIRKYQRSYDLLIQKLPFARLVREVALDLLPSEVGAELRWQSHAIQALQEAAEAFLVHLFE DTNLCAIHAKRVTIMQKDIQLARRIRGVWGGLG*
Coding	>Ani_SJS100_1\|g6220.t1 ATGCCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCGCCGCGACAATCAACAGCTGGCGACCGT GCTGCCGCAAGCTCGTCGAAAGCAGCTGCAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGACCG GCTAGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGACGTTCAGCCTGGTGATCCCACACCACAA GGACGTGTACGCCGCTACAAGCCTGGAACCGTGGCTCTCAAAGAGATCCGCAAGTACCAGCGCTCTTATGATCTG CTTATCCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCTCTTGACCTCCTCCCTTCAGAAGTTGGCGCC GAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAAGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCGAG GACACCAACCTCTGTGCTATTCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGACGCATT CGTGGTGTCTGGGGTGGTTTGGGCTAA
Transcript	>Ani_SJS100_1\|g6220.t1 ATGCCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCGCCGCGACAATCAACAGCTGGCGACCGT GCTGCCGCAAGCTCGTCGAAAGCAGCTGCAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGACCG GCTAGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGACGTTCAGCCTGGTGATCCCACACCACAA GGACGTGTACGCCGCTACAAGCCTGGAACCGTGGCTCTCAAAGAGATCCGCAAGTACCAGCGCTCTTATGATCTG CTTATCCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCTCTTGACCTCCTCCCTTCAGAAGTTGGCGCC GAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAAGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCGAG GACACCAACCTCTGTGCTATTCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGACGCATT CGTGGTGTCTGGGGTGGTTTGGGCTAA
Gene	>Ani_SJS100_1\|g6220.t1 ATGCCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCGCCGCGACAATCAACAGCTGGCGACCGT GCTGCCGCAAGCTCGTCGAAAGCAGCTGCAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGACCG GCTAGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGACGTTCAGCGTGCGTACCCCCACCTTCAA TCCAAAATCCTCTCTGCGCTCTCTCTCTCTCCTGAAGAATGAAAATTGACATCCTCGCAGCTGGTGATCCCACAC CACAAGGACGTGTACGCCGCTACAAGCCTGGAACCGTGGCTCTCAAAGAGATCCGCAAGTACCAGCGCTCTTATG ATCTGCTTATCCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCTCTTGACCTCCTCCCTTCAGAAGTTG GCGCCGAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAAGAAGCAGCCGAAGCTTTCCTTGTACATCTCT TCGAGGACACCAACCTCTGTGCTATTCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGAC GCATTCGTGGTGTCTGGGGTGGTTTGGGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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