© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g606.t1 |
| Gene name | |
| Location | scaffold_002:479162..480057 |
| Strand | - |
| Gene length (bp) | 895 |
| Transcript length (bp) | 741 |
| Coding sequence length (bp) | 741 |
| Protein length (aa) | 247 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09177 | Syntaxin-6_N | Syntaxin 6, N-terminal | 1.9E-27 | 5 | 103 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0048193 | Golgi vesicle transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 223 | 245 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g606.t1 MDHTDPFLQVQADVLSTLQSTRPLFSSYLRIRSLAKSPNNPELQQARSELETTLTDLTADLDDLVESVRAIEQDP YRFGLELEEVQRRRSLVNDVGAEIEKMREELQRTVTASSGGGKGTGALPNPADFDNVLSPSAEDQGDDYYAAMEQ QRQMELMHEQDEQLDGVFRTVGNLRQQADDMGRELEEQGVMIDEVDTLADRVGGKLQNGMSRLKYIIRKNEDTMS SFCIAVLIFVLVLLLILLIVL* |
| Coding | >Ani_SJS100_1|g606.t1 ATGGACCACACAGACCCCTTCCTCCAAGTCCAAGCCGACGTCCTCTCAACCCTCCAATCCACACGTCCTCTATTC TCCTCCTATCTCCGCATCCGCTCCCTCGCCAAGTCTCCCAATAACCCGGAGCTCCAACAAGCGCGCTCCGAGCTT GAGACGACCCTCACCGATCTTACCGCGGACTTAGACGATCTAGTCGAGAGTGTGCGTGCAATCGAGCAAGATCCA TATCGATTCGGCCTAGAACTAGAAGAAGTTCAGCGCCGGCGAAGTCTTGTTAACGATGTCGGTGCCGAGATCGAG AAGATGAGGGAGGAGTTGCAGAGGACGGTTACAGCTTCGAGTGGTGGTGGGAAGGGCACGGGTGCGCTGCCAAAC CCGGCTGATTTCGATAATGTCTTATCGCCGTCGGCGGAGGATCAGGGAGATGATTACTATGCTGCGATGGAGCAG CAGCGGCAGATGGAGCTGATGCACGAGCAAGATGAGCAGTTGGATGGGGTGTTTCGGACTGTGGGGAACCTGCGA CAGCAGGCTGATGATATGGGGAGGGAGTTGGAGGAACAGGGGGTGATGATAGATGAGGTGGATACGTTGGCCGAC CGAGTGGGCGGCAAGCTGCAGAATGGCATGTCGAGGCTAAAATACATTATACGGAAAAATGAGGATACAATGTCA TCCTTTTGCATTGCCGTCCTCATATTCGTTTTGGTCCTCCTCCTCATCCTGCTCATTGTTCTTTAA |
| Transcript | >Ani_SJS100_1|g606.t1 ATGGACCACACAGACCCCTTCCTCCAAGTCCAAGCCGACGTCCTCTCAACCCTCCAATCCACACGTCCTCTATTC TCCTCCTATCTCCGCATCCGCTCCCTCGCCAAGTCTCCCAATAACCCGGAGCTCCAACAAGCGCGCTCCGAGCTT GAGACGACCCTCACCGATCTTACCGCGGACTTAGACGATCTAGTCGAGAGTGTGCGTGCAATCGAGCAAGATCCA TATCGATTCGGCCTAGAACTAGAAGAAGTTCAGCGCCGGCGAAGTCTTGTTAACGATGTCGGTGCCGAGATCGAG AAGATGAGGGAGGAGTTGCAGAGGACGGTTACAGCTTCGAGTGGTGGTGGGAAGGGCACGGGTGCGCTGCCAAAC CCGGCTGATTTCGATAATGTCTTATCGCCGTCGGCGGAGGATCAGGGAGATGATTACTATGCTGCGATGGAGCAG CAGCGGCAGATGGAGCTGATGCACGAGCAAGATGAGCAGTTGGATGGGGTGTTTCGGACTGTGGGGAACCTGCGA CAGCAGGCTGATGATATGGGGAGGGAGTTGGAGGAACAGGGGGTGATGATAGATGAGGTGGATACGTTGGCCGAC CGAGTGGGCGGCAAGCTGCAGAATGGCATGTCGAGGCTAAAATACATTATACGGAAAAATGAGGATACAATGTCA TCCTTTTGCATTGCCGTCCTCATATTCGTTTTGGTCCTCCTCCTCATCCTGCTCATTGTTCTTTAA |
| Gene | >Ani_SJS100_1|g606.t1 ATGGACCACACAGACCCCTTCCTCCAAGTCCAAGCGTAAGTTTCTCTCCCCCTTATTCATCCACTCTACAACCCA TCAAGCCAGCTAGCTGACGTAGCACCAATCCAATGCCAACAGCGACGTCCTCTCAACCCTCCAATCCACACGTCC TCTATTCTCCTCCTATCTCCGCATCCGCTCCCTCGCCAAGTCTCCCAATAACCCGGAGCTCCAACAAGCGCGCTC CGAGCTTGAGACGACCCTCACCGATCTTACCGCGGACTTAGACGATCTAGTCGAGAGTGTGCGTGCAATCGAGCA AGATCCATATCGATTCGGCCTAGAACTAGAAGAAGTTCAGCGCCGGCGAAGTCTTGTTAACGATGTCGGTGCCGA GATCGAGAAGATGAGGGAGGAGTTGCAGAGGACGGTTACAGCTTCGAGTGGTGGTGGGAAGGGCACGGGTGCGCT GCCAAACCCGGCTGATTTCGATAATGTCTTATCGCCGTCGGCGGAGGATCAGGGAGATGATTACTATGCTGCGAT GGAGCAGCAGCGGCAGATGGAGCTGATGCACGAGCAAGATGAGCAGTTGGATGGGGTGTTTCGGACTGTGGGGAA CCTGCGACAGCAGGCTGATGATATGGGGAGGGAGTTGGAGGAACAGGGGGTGATGATAGATGAGGTGGATACGTT GGCCGACCGAGTGGGCGGCAAGCTGCAGAATGGCATGTCGAGGCTAAAATACATTATACGGAAAAATGAGGGTAA GTGCTTCCGCTGCGACTTCTTTACATTGTCCTTTTTCGGAAGAAAAACGTTGGCTGATTATCAATTAGATACAAT GTCATCCTTTTGCATTGCCGTCCTCATATTCGTTTTGGTCCTCCTCCTCATCCTGCTCATTGTTCTTTAA |