© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5945.t1 |
| Gene name | |
| Location | scaffold_035:19439..21288 |
| Strand | + |
| Gene length (bp) | 1849 |
| Transcript length (bp) | 1728 |
| Coding sequence length (bp) | 1728 |
| Protein length (aa) | 576 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01566 | Nramp | Natural resistance-associated macrophage protein | 1.1E-93 | 143 | 523 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030001 | metal ion transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0006811 | ion transport | No |
| GO:0005215 | transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0006812 | cation transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 121 | 138 | 17 |
| 2 | 153 | 174 | 21 |
| 3 | 195 | 214 | 19 |
| 4 | 229 | 248 | 19 |
| 5 | 261 | 283 | 22 |
| 6 | 306 | 328 | 22 |
| 7 | 380 | 402 | 22 |
| 8 | 422 | 444 | 22 |
| 9 | 464 | 486 | 22 |
| 10 | 496 | 515 | 19 |
| 11 | 551 | 573 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5945.t1 MNCPSRTDDTLEHPGWNQNPPALNADITTRSDFNGIANSKVHRRHAGGMGGAAAEGIAAMDHRPNSLDGNEPEME KKTPGEVIAAAPGDQSPRTSSESPRRPFKKSTISFFLRLAQSIKKFGRFVGPGFLIAVAYIDPGNYSTDVAAGAE FRYALLFIVLVSNLFAIFLQSLCIKLGTVTGLNLAENCREHLPKWLNYILYVFAEAAIVATDIAEVVGSAISLNL LLKIPLVAGCAITLADVLFILIFYRPNGAMWGLRLFEFFVMLLVLGVVICFCIQLALIKEQSVGAVFRGYLPSSA IVQSNGLYQSCGILGATVMPHSMFLGSGVVQSRLKEFDVTQGYVDPSVCLGSTNGEVEYRPSIQAIRGCLKYSVI ELTLSLFTFALFVNSAILIVAGASLYGTSGADEADLWGIYNLLSSSIAPAAGLIFALALLLSGISAGIVCTMAGQ MVSEGMLNWSIRPWLRRLVTRSISIIPSIIIAAAVGKEGLNKTLNASQVVLSVILPFVTAPLVYFTCRNRYMTVP TDRNFTGEDSSADGVKMRNNWLVTAIAVIVWVIIAVMNVALLILIGLGKA* |
| Coding | >Ani_SJS100_1|g5945.t1 ATGAATTGTCCTTCGCGCACCGATGACACCCTCGAGCACCCGGGATGGAACCAGAATCCGCCGGCGCTGAATGCC GACATTACCACTCGAAGCGACTTCAACGGCATTGCGAACTCGAAGGTGCATCGGAGACATGCAGGCGGTATGGGA GGGGCTGCAGCTGAAGGTATTGCGGCGATGGATCATAGACCAAATAGTCTAGATGGAAACGAGCCCGAGATGGAG AAGAAGACACCCGGCGAAGTGATTGCTGCCGCTCCTGGGGACCAATCACCCAGGACGAGCAGCGAATCACCTCGC CGTCCTTTCAAAAAATCAACTATATCTTTCTTTCTCCGTCTAGCTCAAAGTATCAAGAAGTTTGGTCGCTTCGTG GGCCCTGGATTCCTGATCGCGGTAGCCTACATTGATCCGGGAAACTACTCCACCGATGTCGCCGCAGGCGCGGAG TTTCGCTATGCTTTGCTCTTCATCGTCCTAGTGTCCAACCTTTTTGCTATTTTTCTACAGTCGCTGTGTATCAAA CTCGGCACAGTGACAGGGCTCAATCTGGCGGAAAACTGCAGGGAGCATCTGCCCAAGTGGTTGAACTACATCCTG TATGTTTTTGCGGAGGCCGCCATCGTGGCAACCGATATCGCAGAGGTTGTCGGGTCTGCGATTTCGCTCAACCTT CTCCTGAAAATCCCTCTGGTGGCTGGATGCGCAATCACATTAGCCGATGTTCTTTTCATCCTGATATTCTACCGA CCGAATGGCGCCATGTGGGGACTGCGTCTATTCGAGTTCTTCGTCATGCTGTTGGTTCTGGGAGTTGTCATATGC TTTTGCATCCAGCTTGCCCTTATCAAAGAACAGTCGGTCGGAGCTGTTTTCCGGGGCTACTTGCCTTCGTCTGCC ATAGTGCAGTCCAATGGTCTGTATCAAAGCTGTGGTATCCTCGGTGCTACAGTGATGCCTCACTCCATGTTTCTT GGCAGCGGAGTTGTCCAATCGCGACTGAAGGAATTCGATGTTACCCAAGGCTACGTCGATCCCTCCGTCTGCCTT GGAAGCACCAACGGAGAAGTGGAATACAGGCCGTCAATCCAGGCGATTAGGGGCTGTCTGAAGTATTCCGTCATT GAGCTTACGTTGTCCCTTTTTACATTTGCCCTCTTCGTCAACAGCGCCATTCTCATAGTTGCTGGTGCTTCCCTG TACGGAACGTCGGGAGCTGATGAAGCAGACCTCTGGGGCATCTACAATCTTCTCTCCAGCTCCATTGCTCCGGCT GCAGGTCTTATCTTTGCACTGGCCCTACTTCTCTCAGGTATCTCGGCCGGCATTGTCTGTACCATGGCTGGGCAA ATGGTTAGCGAGGGAATGCTGAACTGGAGCATCAGACCTTGGCTTCGCCGACTGGTCACGCGGTCCATCAGTATC ATCCCTAGCATAATCATTGCAGCTGCTGTCGGCAAGGAGGGATTGAACAAAACTCTCAACGCCAGTCAAGTGGTA TTGAGTGTCATCCTTCCGTTTGTCACCGCTCCTCTAGTTTACTTTACGTGCCGCAACCGTTACATGACTGTTCCT ACGGACAGAAACTTCACTGGCGAGGATTCCTCGGCTGACGGAGTCAAGATGAGAAACAACTGGCTTGTTACTGCC ATCGCTGTCATTGTTTGGGTAATCATTGCGGTCATGAACGTTGCTTTGCTCATCCTTATTGGGCTCGGCAAAGCC TGA |
| Transcript | >Ani_SJS100_1|g5945.t1 ATGAATTGTCCTTCGCGCACCGATGACACCCTCGAGCACCCGGGATGGAACCAGAATCCGCCGGCGCTGAATGCC GACATTACCACTCGAAGCGACTTCAACGGCATTGCGAACTCGAAGGTGCATCGGAGACATGCAGGCGGTATGGGA GGGGCTGCAGCTGAAGGTATTGCGGCGATGGATCATAGACCAAATAGTCTAGATGGAAACGAGCCCGAGATGGAG AAGAAGACACCCGGCGAAGTGATTGCTGCCGCTCCTGGGGACCAATCACCCAGGACGAGCAGCGAATCACCTCGC CGTCCTTTCAAAAAATCAACTATATCTTTCTTTCTCCGTCTAGCTCAAAGTATCAAGAAGTTTGGTCGCTTCGTG GGCCCTGGATTCCTGATCGCGGTAGCCTACATTGATCCGGGAAACTACTCCACCGATGTCGCCGCAGGCGCGGAG TTTCGCTATGCTTTGCTCTTCATCGTCCTAGTGTCCAACCTTTTTGCTATTTTTCTACAGTCGCTGTGTATCAAA CTCGGCACAGTGACAGGGCTCAATCTGGCGGAAAACTGCAGGGAGCATCTGCCCAAGTGGTTGAACTACATCCTG TATGTTTTTGCGGAGGCCGCCATCGTGGCAACCGATATCGCAGAGGTTGTCGGGTCTGCGATTTCGCTCAACCTT CTCCTGAAAATCCCTCTGGTGGCTGGATGCGCAATCACATTAGCCGATGTTCTTTTCATCCTGATATTCTACCGA CCGAATGGCGCCATGTGGGGACTGCGTCTATTCGAGTTCTTCGTCATGCTGTTGGTTCTGGGAGTTGTCATATGC TTTTGCATCCAGCTTGCCCTTATCAAAGAACAGTCGGTCGGAGCTGTTTTCCGGGGCTACTTGCCTTCGTCTGCC ATAGTGCAGTCCAATGGTCTGTATCAAAGCTGTGGTATCCTCGGTGCTACAGTGATGCCTCACTCCATGTTTCTT GGCAGCGGAGTTGTCCAATCGCGACTGAAGGAATTCGATGTTACCCAAGGCTACGTCGATCCCTCCGTCTGCCTT GGAAGCACCAACGGAGAAGTGGAATACAGGCCGTCAATCCAGGCGATTAGGGGCTGTCTGAAGTATTCCGTCATT GAGCTTACGTTGTCCCTTTTTACATTTGCCCTCTTCGTCAACAGCGCCATTCTCATAGTTGCTGGTGCTTCCCTG TACGGAACGTCGGGAGCTGATGAAGCAGACCTCTGGGGCATCTACAATCTTCTCTCCAGCTCCATTGCTCCGGCT GCAGGTCTTATCTTTGCACTGGCCCTACTTCTCTCAGGTATCTCGGCCGGCATTGTCTGTACCATGGCTGGGCAA ATGGTTAGCGAGGGAATGCTGAACTGGAGCATCAGACCTTGGCTTCGCCGACTGGTCACGCGGTCCATCAGTATC ATCCCTAGCATAATCATTGCAGCTGCTGTCGGCAAGGAGGGATTGAACAAAACTCTCAACGCCAGTCAAGTGGTA TTGAGTGTCATCCTTCCGTTTGTCACCGCTCCTCTAGTTTACTTTACGTGCCGCAACCGTTACATGACTGTTCCT ACGGACAGAAACTTCACTGGCGAGGATTCCTCGGCTGACGGAGTCAAGATGAGAAACAACTGGCTTGTTACTGCC ATCGCTGTCATTGTTTGGGTAATCATTGCGGTCATGAACGTTGCTTTGCTCATCCTTATTGGGCTCGGCAAAGCC TGA |
| Gene | >Ani_SJS100_1|g5945.t1 ATGAATTGTCCTTCGCGCACCGATGACACCCTCGAGCACCCGGGATGGAACCAGAATCCGCCGGCGCTGAATGCC GACATTACCACTCGAAGCGACTTCAACGGCATTGCGAACTCGAAGGTGCATCGGAGACATGCAGGCGGTATGGGA GGGGCTGCAGCTGAAGGTATTGCGGCGATGGATCATAGACCAAATAGTCTAGATGGAAACGAGCCCGAGATGGAG AAGAAGACACCCGGCGAAGTGATTGCTGCCGCTCCTGGGGACCAATCACCCAGGACGAGCAGCGAATCACCTCGC CGTCCTTTCAAAAAATCAACTATATCTTTCTTTCTCCGTCTAGCTCAAAGTATCAAGAAGTTTGGTCGCTTCGTG GGCCCTGGATTCCTGATCGCGGTAGCCTACATTGATCCGGGAAACTACTCCACCGATGTCGCCGCAGGCGCGGAG TTTCGCTATGCTTTGCTCTTCATCGTCCTAGTGTCCAACCTTTTTGCTATTTTTCTACAGTCGCTGTGTATCAAA CTCGGCACAGTGACAGGGCTCAATCTGGCGGAAAACTGCAGGGAGCATCTGCCCAAGTGGTTGAACTACATCCTG TATGTTTTTGCGGAGGCCGCCATCGTGGCAACCGATATCGCAGAGGTACGCAGCCAATGTTTCCCCTCCCTGTTT TCTGACGCTGGTGCTAAGCTGGTTTCCTAGGTTGTCGGGTCTGCGATTTCGCTCAACCTTCTCCTGAAAATCCCT CTGGTGGCTGGATGCGCAATCACATTAGCCGATGTTCTTTTCATCCTGATATTCTACCGACCGAATGGCGCCATG TGGGGACTGCGTCTATTCGAGTTCTTCGTCATGCTGTTGGTTCTGGGAGTTGTCATATGCTTTTGCATCCAGCTT GCCCTTATCAAAGAACAGTCGGTCGGAGCTGTTTTCCGGGGCTACTTGCCTTCGTCTGCCATAGTGCAGTCCAAT GGGTGAGTAGCCCGATTTGTATATGACTGGAAACACTGAGTTTGCTAATATATTGTTTTCCAGTCTGTATCAAAG CTGTGGTATCCTCGGTGCTACAGTGATGCCTCACTCCATGTTTCTTGGCAGCGGAGTTGTCCAATCGCGACTGAA GGAATTCGATGTTACCCAAGGCTACGTCGATCCCTCCGTCTGCCTTGGAAGCACCAACGGAGAAGTGGAATACAG GCCGTCAATCCAGGCGATTAGGGGCTGTCTGAAGTATTCCGTCATTGAGCTTACGTTGTCCCTTTTTACATTTGC CCTCTTCGTCAACAGCGCCATTCTCATAGTTGCTGGTGCTTCCCTGTACGGAACGTCGGGAGCTGATGAAGCAGA CCTCTGGGGCATCTACAATCTTCTCTCCAGCTCCATTGCTCCGGCTGCAGGTCTTATCTTTGCACTGGCCCTACT TCTCTCAGGTATCTCGGCCGGCATTGTCTGTACCATGGCTGGGCAAATGGTTAGCGAGGGAATGCTGAACTGGAG CATCAGACCTTGGCTTCGCCGACTGGTCACGCGGTCCATCAGTATCATCCCTAGCATAATCATTGCAGCTGCTGT CGGCAAGGAGGGATTGAACAAAACTCTCAACGCCAGTCAAGTGGTATTGAGTGTCATCCTTCCGTTTGTCACCGC TCCTCTAGTTTACTTTACGTGCCGCAACCGTTACATGACTGTTCCTACGGACAGAAACTTCACTGGCGAGGATTC CTCGGCTGACGGAGTCAAGATGAGAAACAACTGGCTTGTTACTGCCATCGCTGTCATTGTTTGGGTAATCATTGC GGTCATGAACGTTGCTTTGCTCATCCTTATTGGGCTCGGCAAAGCCTGA |