© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5864.t1 |
| Gene name | |
| Location | scaffold_034:111736..112732 |
| Strand | + |
| Gene length (bp) | 996 |
| Transcript length (bp) | 879 |
| Coding sequence length (bp) | 879 |
| Protein length (aa) | 293 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 2.8E-72 | 56 | 262 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 40 | 20 |
| 2 | 47 | 66 | 19 |
| 3 | 86 | 108 | 22 |
| 4 | 121 | 143 | 22 |
| 5 | 158 | 180 | 22 |
| 6 | 205 | 222 | 17 |
| 7 | 237 | 259 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5864.t1 MLGARDSASYDFAFYRYDPSMGGAVLFILLFIGTTGYHVFQMVKSRTWFFIPFVIGVEIIGYIGRAMSSKQSPNW TLGPYIVQTLFLLLAPALLAASIYMLLGRIILVLQAESHALLKKKWLTKIFVTGDVLSFLLQGAGGGIQASGSLA GMKNGEHIIVVGLVIQIFFFAFFMVTATHFYLKVHKYPFPRSCSPHIPWKKHMKVLYATSILIMVRSMFRLIEYI QGNNGYLLHHEAFLYIFDALLMFITMIIFNAVHPQEIGQLLRHPNDYSMATLPEEQAPNPYQGCNNV* |
| Coding | >Ani_SJS100_1|g5864.t1 ATGCTGGGCGCCAGGGATTCCGCCAGTTATGACTTCGCATTCTATCGCTATGACCCCAGTATGGGTGGCGCCGTT CTTTTCATCCTCCTGTTCATCGGCACAACAGGGTATCATGTCTTCCAAATGGTCAAGTCTCGCACATGGTTCTTC ATCCCATTTGTGATCGGAGTCGAGATTATCGGATATATCGGACGTGCCATGTCTAGCAAGCAAAGTCCAAATTGG ACGCTCGGACCCTACATCGTGCAGACGCTCTTTCTTTTACTCGCCCCAGCTCTCCTCGCAGCCTCCATATACATG CTACTCGGTCGGATTATCCTTGTGTTACAAGCCGAATCACACGCTCTCTTGAAGAAGAAATGGTTAACCAAGATA TTTGTCACGGGTGATGTCCTTTCATTTTTATTGCAGGGAGCGGGTGGCGGCATTCAGGCCAGTGGAAGCCTGGCC GGCATGAAGAATGGCGAGCACATCATCGTCGTTGGTCTCGTGATCCAAATATTCTTCTTCGCATTCTTTATGGTC ACTGCGACGCACTTTTACTTGAAGGTCCATAAATATCCCTTCCCGCGATCTTGTTCTCCACATATTCCTTGGAAG AAACACATGAAGGTACTCTATGCGACGAGCATATTGATCATGGTTCGATCCATGTTTCGATTGATTGAGTATATT CAGGGGAACAATGGGTACCTCTTACACCATGAAGCCTTTCTCTACATATTTGATGCATTGTTGATGTTTATCACC ATGATAATATTCAATGCTGTCCATCCGCAAGAAATCGGTCAACTACTCCGTCATCCAAATGACTATAGTATGGCG ACTCTTCCAGAAGAGCAGGCTCCGAATCCTTACCAAGGCTGCAATAATGTGTGA |
| Transcript | >Ani_SJS100_1|g5864.t1 ATGCTGGGCGCCAGGGATTCCGCCAGTTATGACTTCGCATTCTATCGCTATGACCCCAGTATGGGTGGCGCCGTT CTTTTCATCCTCCTGTTCATCGGCACAACAGGGTATCATGTCTTCCAAATGGTCAAGTCTCGCACATGGTTCTTC ATCCCATTTGTGATCGGAGTCGAGATTATCGGATATATCGGACGTGCCATGTCTAGCAAGCAAAGTCCAAATTGG ACGCTCGGACCCTACATCGTGCAGACGCTCTTTCTTTTACTCGCCCCAGCTCTCCTCGCAGCCTCCATATACATG CTACTCGGTCGGATTATCCTTGTGTTACAAGCCGAATCACACGCTCTCTTGAAGAAGAAATGGTTAACCAAGATA TTTGTCACGGGTGATGTCCTTTCATTTTTATTGCAGGGAGCGGGTGGCGGCATTCAGGCCAGTGGAAGCCTGGCC GGCATGAAGAATGGCGAGCACATCATCGTCGTTGGTCTCGTGATCCAAATATTCTTCTTCGCATTCTTTATGGTC ACTGCGACGCACTTTTACTTGAAGGTCCATAAATATCCCTTCCCGCGATCTTGTTCTCCACATATTCCTTGGAAG AAACACATGAAGGTACTCTATGCGACGAGCATATTGATCATGGTTCGATCCATGTTTCGATTGATTGAGTATATT CAGGGGAACAATGGGTACCTCTTACACCATGAAGCCTTTCTCTACATATTTGATGCATTGTTGATGTTTATCACC ATGATAATATTCAATGCTGTCCATCCGCAAGAAATCGGTCAACTACTCCGTCATCCAAATGACTATAGTATGGCG ACTCTTCCAGAAGAGCAGGCTCCGAATCCTTACCAAGGCTGCAATAATGTGTGA |
| Gene | >Ani_SJS100_1|g5864.t1 ATGCTGGGCGCCAGGGATTCCGCCAGTTATGACTTCGCATTCTATCGCTATGACCCCAGTATGGGTGGCGCCGTT CTTTTCATCCTCCTGTTCATCGGCACAACAGGGTATCATGTCTTCCAAATGGTCAAGTCTCGCACATGGTTCTTC ATCCCATTTGTGATCGGAGGTATATGTATGAGCACCTTCCAATGTGCGTGAGTGTTGAACCATCATGCTAATTTT CCTAGTCGAGATTATCGGATATATCGGACGTGCCATGTCTAGCAAGCAAAGTCCAAATTGGACGCTCGGACCCTA CATCGTGCAGACGCTCTTTCTTTTACTCGCCCCAGCTCTCCTCGCAGCCTCCATATACATGCTACTCGGTCGGAT TATCCTTGTGTTACAAGCCGAATCACACGCTCTCTTGAAGAAGAAATGGTTAACCAAGATATTTGTCACGGGTGA TGTCCTTTCATTTTTATTGCAGGGAGCGGGTACGAATCGCATAAGGCAACCCCATATTACCAAATAGTTCTCTGA CCCTGACCAGGTGGCGGCATTCAGGCCAGTGGAAGCCTGGCCGGCATGAAGAATGGCGAGCACATCATCGTCGTT GGTCTCGTGATCCAAATATTCTTCTTCGCATTCTTTATGGTCACTGCGACGCACTTTTACTTGAAGGTCCATAAA TATCCCTTCCCGCGATCTTGTTCTCCACATATTCCTTGGAAGAAACACATGAAGGTACTCTATGCGACGAGCATA TTGATCATGGTTCGATCCATGTTTCGATTGATTGAGTATATTCAGGGGAACAATGGGTACCTCTTACACCATGAA GCCTTTCTCTACATATTTGATGCATTGTTGATGTTTATCACCATGATAATATTCAATGCTGTCCATCCGCAAGAA ATCGGTCAACTACTCCGTCATCCAAATGACTATAGTATGGCGACTCTTCCAGAAGAGCAGGCTCCGAATCCTTAC CAAGGCTGCAATAATGTGTGA |