© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5789.t1 |
| Gene name | |
| Location | scaffold_033:249081..250932 |
| Strand | - |
| Gene length (bp) | 1851 |
| Transcript length (bp) | 1551 |
| Coding sequence length (bp) | 1551 |
| Protein length (aa) | 517 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 6.9E-75 | 43 | 489 |
| PF00324 | AA_permease | Amino acid permease | 3.7E-15 | 67 | 489 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 59 | 17 |
| 2 | 74 | 96 | 22 |
| 3 | 125 | 147 | 22 |
| 4 | 167 | 186 | 19 |
| 5 | 193 | 215 | 22 |
| 6 | 235 | 257 | 22 |
| 7 | 278 | 300 | 22 |
| 8 | 327 | 349 | 22 |
| 9 | 379 | 401 | 22 |
| 10 | 406 | 428 | 22 |
| 11 | 448 | 470 | 22 |
| 12 | 480 | 502 | 22 |
| Orthofinder run ID | 3 |
| Orthogroup | 6066 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5789.t1 MLDEEVEMKSGSAVQSTVADGRPHGAASSSIEYRQRQKLDRYLNFFSSLAFSATLLASWESAGGSLQAGLFNGGP AAIVYGIIMSGVGNLAIATSLAELASVHPTAGAQYHWSYVLAPRYRRFISFFQGWVTFFSWAALVCISPYFIGTE IEGMAILAYPDYDAKRWQGTLLMWAVVLIPIIINIFARRLLAIIEVAAGVMHVVFLPVMIATFVILAPRNSNAFV WDTFVSGLSGWENPGVVYSVGLLGVITPLSGVDGIIHMSEEVKNAKVVIPRSMIYGTIINSVMAFGYLIAVLYCM GDYTAALTSPTGYPIITIAYQATGSKAATYVLMAMGMLPGWIALFNGLASVTRLTWAFARDNGLPFSDFFVKVDP RFKIPIRALFLVTTLVILLSFIQIGSSAAFNAILSLSTLGLYISYLIPLVLLVWKRFTAPKDIPQGTFSLGKWGL PINLVAILFATYFSIFLPFPSEVPVTGETMNYAGPVLGFVMLFACGDWLVRGRHKWNGPTMAYSRE* |
| Coding | >Ani_SJS100_1|g5789.t1 ATGCTCGACGAGGAGGTTGAGATGAAAAGCGGCAGCGCCGTCCAATCCACAGTTGCTGATGGACGCCCTCATGGT GCCGCAAGCAGCAGCATCGAATATCGTCAGCGACAAAAGCTAGACCGATACTTGAATTTCTTTTCCTCACTAGCG TTTTCGGCGACTCTTCTTGCGTCGTGGGAATCAGCTGGAGGCAGCTTGCAGGCCGGTCTCTTTAACGGAGGTCCT GCTGCCATTGTATATGGCATCATTATGAGCGGAGTGGGGAATCTGGCAATTGCCACTTCACTGGCTGAACTGGCG TCAGTGCACCCGACAGCTGGGGCGCAGTATCACTGGAGCTATGTTCTGGCGCCACGCTACCGGCGCTTCATTAGT TTCTTCCAAGGCTGGGTTACCTTCTTTTCTTGGGCTGCACTGGTCTGCATCTCGCCCTATTTTATCGGCACAGAG ATCGAAGGCATGGCTATCCTGGCCTATCCCGACTATGATGCAAAACGGTGGCAGGGAACCCTGCTCATGTGGGCA GTAGTCCTGATCCCGATCATCATCAACATCTTCGCCCGGCGCCTGCTCGCCATCATCGAAGTCGCAGCAGGCGTG ATGCATGTTGTCTTCCTCCCCGTGATGATAGCGACCTTTGTCATTCTAGCCCCGCGCAATTCTAATGCTTTCGTC TGGGATACTTTCGTGAGTGGTCTCAGTGGCTGGGAAAACCCAGGCGTCGTGTACTCCGTGGGACTGTTAGGTGTC ATCACCCCCCTGAGTGGAGTCGACGGCATCATCCACATGTCGGAGGAAGTCAAGAACGCCAAAGTCGTTATTCCC CGGTCCATGATCTACGGTACCATCATTAACTCTGTCATGGCATTTGGCTATCTCATCGCCGTCCTCTACTGCATG GGCGACTACACCGCTGCCCTCACCAGTCCAACGGGATACCCCATCATTACCATCGCCTACCAAGCCACCGGATCC AAAGCAGCCACATATGTGCTGATGGCCATGGGTATGCTTCCGGGTTGGATAGCACTGTTTAATGGCCTTGCGTCT GTCACTCGACTTACGTGGGCCTTTGCACGCGACAACGGGCTTCCGTTCTCTGATTTCTTTGTGAAGGTTGATCCA CGATTTAAAATTCCTATTCGGGCATTATTCCTCGTCACAACATTGGTTATCCTTCTCTCCTTTATTCAAATCGGG TCATCGGCCGCCTTCAACGCTATTCTCTCCCTGAGTACGTTGGGTTTGTATATTTCATACCTAATTCCATTGGTC CTTCTGGTGTGGAAAAGGTTTACCGCACCGAAGGATATTCCACAAGGCACATTCTCTCTGGGGAAGTGGGGATTA CCCATCAACCTGGTAGCGATTCTGTTCGCTACTTACTTCTCCATCTTCTTACCCTTTCCCTCTGAGGTGCCGGTG ACTGGGGAGACCATGAATTATGCCGGGCCGGTGTTGGGCTTCGTGATGCTGTTTGCTTGTGGAGATTGGCTGGTG CGAGGCCGCCATAAGTGGAATGGTCCGACTATGGCGTATTCACGGGAGTGA |
| Transcript | >Ani_SJS100_1|g5789.t1 ATGCTCGACGAGGAGGTTGAGATGAAAAGCGGCAGCGCCGTCCAATCCACAGTTGCTGATGGACGCCCTCATGGT GCCGCAAGCAGCAGCATCGAATATCGTCAGCGACAAAAGCTAGACCGATACTTGAATTTCTTTTCCTCACTAGCG TTTTCGGCGACTCTTCTTGCGTCGTGGGAATCAGCTGGAGGCAGCTTGCAGGCCGGTCTCTTTAACGGAGGTCCT GCTGCCATTGTATATGGCATCATTATGAGCGGAGTGGGGAATCTGGCAATTGCCACTTCACTGGCTGAACTGGCG TCAGTGCACCCGACAGCTGGGGCGCAGTATCACTGGAGCTATGTTCTGGCGCCACGCTACCGGCGCTTCATTAGT TTCTTCCAAGGCTGGGTTACCTTCTTTTCTTGGGCTGCACTGGTCTGCATCTCGCCCTATTTTATCGGCACAGAG ATCGAAGGCATGGCTATCCTGGCCTATCCCGACTATGATGCAAAACGGTGGCAGGGAACCCTGCTCATGTGGGCA GTAGTCCTGATCCCGATCATCATCAACATCTTCGCCCGGCGCCTGCTCGCCATCATCGAAGTCGCAGCAGGCGTG ATGCATGTTGTCTTCCTCCCCGTGATGATAGCGACCTTTGTCATTCTAGCCCCGCGCAATTCTAATGCTTTCGTC TGGGATACTTTCGTGAGTGGTCTCAGTGGCTGGGAAAACCCAGGCGTCGTGTACTCCGTGGGACTGTTAGGTGTC ATCACCCCCCTGAGTGGAGTCGACGGCATCATCCACATGTCGGAGGAAGTCAAGAACGCCAAAGTCGTTATTCCC CGGTCCATGATCTACGGTACCATCATTAACTCTGTCATGGCATTTGGCTATCTCATCGCCGTCCTCTACTGCATG GGCGACTACACCGCTGCCCTCACCAGTCCAACGGGATACCCCATCATTACCATCGCCTACCAAGCCACCGGATCC AAAGCAGCCACATATGTGCTGATGGCCATGGGTATGCTTCCGGGTTGGATAGCACTGTTTAATGGCCTTGCGTCT GTCACTCGACTTACGTGGGCCTTTGCACGCGACAACGGGCTTCCGTTCTCTGATTTCTTTGTGAAGGTTGATCCA CGATTTAAAATTCCTATTCGGGCATTATTCCTCGTCACAACATTGGTTATCCTTCTCTCCTTTATTCAAATCGGG TCATCGGCCGCCTTCAACGCTATTCTCTCCCTGAGTACGTTGGGTTTGTATATTTCATACCTAATTCCATTGGTC CTTCTGGTGTGGAAAAGGTTTACCGCACCGAAGGATATTCCACAAGGCACATTCTCTCTGGGGAAGTGGGGATTA CCCATCAACCTGGTAGCGATTCTGTTCGCTACTTACTTCTCCATCTTCTTACCCTTTCCCTCTGAGGTGCCGGTG ACTGGGGAGACCATGAATTATGCCGGGCCGGTGTTGGGCTTCGTGATGCTGTTTGCTTGTGGAGATTGGCTGGTG CGAGGCCGCCATAAGTGGAATGGTCCGACTATGGCGTATTCACGGGAGTGA |
| Gene | >Ani_SJS100_1|g5789.t1 ATGCTCGACGAGGAGGTTGAGATGAAAAGCGGCAGCGCCGTCCAATCCACAGTTGCTGATGGACGCCCTCATGGT GCCGCAAGCAGCAGCATCGAATATCGTCAGCGACAAAAGCTAGACGTACATGATCCTCGTCTAAATCACTGTCCG CTGTTCGCATGCTAACTTGGTTCTCGGCAGCGATACTTGAATTTCTTTTCCTCACTAGCGTTTTCGGCGACTCTT CTTGCGTCGTGGGAATCAGCTGGAGGCAGCTTGCAGGCCGGTCTCTTTAACGGAGGTCCTGCTGCCATTGTATAT GGCATCATTATGAGCGGAGTGGGGAATCTGGCAATTGCCACTTCACTGGCTGAACTGGCGTCAGTGTATGTAAGG CCCATTCACTATGACAATTCTTAGAAACTCACTGCTGATCAAACATCCATATTTGCCAGGCACCCGACAGCTGGG GCGCAGTATCACTGGAGCTATGTTCTGGCGCCACGCTACCGGCGCTTCATTAGTTTCTTCCAAGGTCAGACATAA CAATCACATTTGCACCGCGGGTAGATGTGTATGCTAACTAGCAACGGGTATATACAGGCTGGGTTACCGTACGAT GCTTCTCACCTTTATGTTTGCTACACTCGCTGAAAGATGACAGTTCTTTTCTTGGGCTGCACTGGTCTGCATCTC GCCCTATTTTATCGGCACAGAGATCGAAGGCATGGCTATCCTGGCCTATCCCGACTATGATGCAAAACGGTGGCA GGGAACCCTGCTCATGTGGGCAGTAGTCCTGATCCCGATCATCATCAACATCTTCGCCCGGCGCCTGCTCGCCAT CATCGAAGTCGCAGCAGGCGTGATGCATGTTGTCTTCCTCCCCGTGATGATAGCGACCTTTGTCATTCTAGCCCC GCGCAATTCTAATGCTTTCGTCTGGGATACTTTCGTGAGTGGTCTCAGTGGCTGGGAAAACCCAGGCGTCGTGTA CTCCGTGGGACTGTTAGGTGTCATCACCCCCCTGAGTGGTACTTATCCTTGGCCCTGACCATACTACCAACCAAC TAATCAATCTTCTCAGGAGTCGACGGCATCATCCACATGTCGGAGGAAGTCAAGAACGCCAAAGTCGTTATTCCC CGGTCCATGATCTACGGTACCATCATTAACTCTGTCATGGCATTTGGCTATCTCATCGCCGTCCTCTACTGCATG GGCGACTACACCGCTGCCCTCACCAGTCCAACGGGATACCCCATCATTACCATCGCCTACCAAGCCACCGGATCC AAAGCAGCCACATATGTGCTGATGGCCATGGGTATGCTTCCGGGTTGGATAGCACTGTTTAATGGCCTTGCGTCT GTCACTCGACTTACGTGGGCCTTTGCACGCGACAACGGGCTTCCGTTCTCTGATTTCTTTGTGAAGGTTGATCCA CGATTTAAAATTCCTATTCGGGCATTATTCCTCGTCACAACATTGGTTATCCTTCTCTCCTTTATTCAAATCGGG TCATCGGCCGCCTTCAACGCTATTCTCTCCCTGAGTACGTTGGGTTTGTATATTTCATACCTAATTCCATTGGTC CTTCTGGTGTGGAAAAGGTTTACCGCACCGAAGGATATTCCACAAGGCACATTCTCTCTGGGGAAGTGGGGATTA CCCATCAACCTGGTAGCGATTCTGTTCGCTACTTACTTCTCCATCTTCTTACCCTTTCCCTCTGAGGTGCCGGTG ACTGGGGAGACCATGAATTATGCCGGGCCGGTGTTGGGCTTCGTGATGCTGTTTGCTTGTGGAGATTGGCTGGTG CGAGGCCGCCATAAGTGGAATGGTCCGACTATGGCGTATTCACGGGAGTGA |