Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g5577.t1
Gene name
Locationscaffold_031:335259..335858
Strand+
Gene length (bp)599
Transcript length (bp)267
Coding sequence length (bp)267
Protein length (aa) 89

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 3.5E-18 11 74

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g5577.t1
MSFNPVNPRPFLQARVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIRCNNILWMG
SADSVEMTDLGLR*
Coding >Ani_SJS100_1|g5577.t1
ATGAGTTTCAACCCTGTCAACCCCCGGCCTTTCCTCCAGGCTAGAGTCGGTACCGAGCTCATCATCCGTCTGAAG
TGGGGCCAAACGGAATACAAGGGCAAGCTTGAGAGCATCGATTCGTACATGAACGTGCTGCTCCGTGATACGGAA
GAGTTCATTGACGGAAAGAACACGGGAACATTGGGTCTGGTCCTGATTAGGTGTAACAACATCCTCTGGATGGGC
TCTGCGGACAGCGTGGAAATGACGGACCTGGGACTACGATAG
Transcript >Ani_SJS100_1|g5577.t1
ATGAGTTTCAACCCTGTCAACCCCCGGCCTTTCCTCCAGGCTAGAGTCGGTACCGAGCTCATCATCCGTCTGAAG
TGGGGCCAAACGGAATACAAGGGCAAGCTTGAGAGCATCGATTCGTACATGAACGTGCTGCTCCGTGATACGGAA
GAGTTCATTGACGGAAAGAACACGGGAACATTGGGTCTGGTCCTGATTAGGTGTAACAACATCCTCTGGATGGGC
TCTGCGGACAGCGTGGAAATGACGGACCTGGGACTACGATAG
Gene >Ani_SJS100_1|g5577.t1
ATGAGTGTTCGTACTCTTCTATCCCTACTCCATTGACTCAAGCTTTATCTCAGGTGTACACTTGTATTACTAAAG
GAGTAAACTGACTCTGCGAATCTAGTTCAACCCTGTCAACCCCCGGCCTTTCCTCCAGGCTAGGTACGCACCCGG
TCCCTTGTCGCTTGATCGCCCCGCCGCAATCCCATCCTATAACTTCCAATTTCTATTGAAAAATATCCTCTAATT
CAAATCGCAGAGTCGGTACCGAGCTCATCATCCGTCTGAAGTGGGGCCAAACGGAATACAAGGGCAAGCTTGAGA
GCATCGATTCGTACATGAACGTGCTGCTCCGTGATACGGAAGAGTTCATTGACGGAAAGAACACGGGAACATTGG
GTCTGGTCCTGATTAGGTGCGTTTATTCGGTCGCCTGCTATCTCGGGGGCTGGGGTTTCCTGATCCCAGTGCTGG
GATCTGCGCATCCGTTACCCCTCTCCGGAGATACATTTGGACGCATATTGGAAGGATATTTGCTAACGCAATGCG
CTGATAGGTGTAACAACATCCTCTGGATGGGCTCTGCGGACAGCGTGGAAATGACGGACCTGGGACTACGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail