© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g5563.t1 |
| Gene name | |
| Location | scaffold_031:288794..290091 |
| Strand | - |
| Gene length (bp) | 1297 |
| Transcript length (bp) | 1110 |
| Coding sequence length (bp) | 1110 |
| Protein length (aa) | 370 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01940 | DUF92 | Integral membrane protein DUF92 | 3.2E-82 | 9 | 348 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 58 | 19 |
| 2 | 180 | 202 | 22 |
| 3 | 217 | 239 | 22 |
| 4 | 339 | 361 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5563.t1 MKPYIGMPAVIVLVHRAWSRKSLTTPGLIAAALTASAHALHPWSAPFVLLGVFYFGGTKVTKVKHDVKARLTLSA TGSEGGEGQRTHIQVLANSVVATVLALLHTYVLAGKPASATQCFSNGHDVADLLVVGIVANYAAVAADTYSSELG ILSKSKPRLITSPTFRVVPPGTNGGVTGTGLLAGVLGAFTIAVSSAAILPFCSEGDTLSTLKSRAQWILAVTMWG GLGSVLDSVLGGLLQASVVDKRTGKVIEGAGGQKVLVHPSSTKPGVPADTTGLKPAGSSSSAQVHATEAVANTAT LKGTRATGTSTGTSAGEIESGHESRRVESGRDLLDNNAVNLLMAFAMSVGAMGAASWAWGLNLADLASW* |
| Coding | >Ani_SJS100_1|g5563.t1 ATGAAACCATACATCGGTATGCCAGCGGTGATAGTGCTCGTTCATCGTGCTTGGTCGCGAAAGTCGCTGACCACC CCCGGCCTCATTGCGGCTGCGCTGACGGCCAGCGCCCATGCTCTTCATCCATGGTCCGCTCCTTTTGTCTTATTA GGAGTATTCTACTTTGGGGGCACCAAAGTTACCAAGGTTAAACACGATGTCAAAGCTCGTTTGACGCTCTCCGCG ACCGGCTCCGAGGGCGGCGAGGGTCAACGTACCCACATCCAAGTCCTGGCGAACTCTGTTGTCGCGACAGTGCTT GCTCTCCTACATACATATGTTCTGGCAGGGAAGCCTGCGAGCGCAACACAGTGCTTTTCGAATGGTCATGATGTG GCGGATCTGTTGGTCGTGGGAATAGTCGCGAACTACGCCGCTGTCGCCGCTGATACATACTCCTCCGAGCTTGGT ATTCTGTCCAAGTCCAAACCCCGCCTGATCACCTCTCCCACGTTCCGCGTTGTCCCCCCCGGTACCAATGGCGGT GTAACGGGCACCGGACTCCTAGCAGGAGTGCTGGGTGCATTTACAATTGCCGTGTCATCCGCTGCTATTCTACCT TTCTGCTCCGAAGGCGATACTCTCTCGACACTCAAGAGCCGGGCTCAGTGGATTCTGGCTGTGACAATGTGGGGA GGTTTGGGCAGTGTGCTGGATAGTGTCTTGGGTGGATTGCTCCAGGCCAGCGTGGTGGACAAGAGAACAGGAAAG GTCATCGAAGGAGCCGGTGGCCAGAAGGTCCTTGTTCACCCCTCTTCTACTAAGCCCGGCGTCCCAGCTGATACC ACCGGTCTGAAGCCTGCCGGATCAAGCTCGAGTGCGCAGGTACACGCCACAGAGGCAGTCGCTAACACTGCCACT CTGAAAGGAACCAGGGCTACTGGAACGTCGACGGGGACGTCCGCAGGAGAAATTGAATCGGGACACGAAAGCCGG AGGGTAGAGAGTGGACGGGACCTCTTGGATAACAATGCCGTGAATCTTCTGATGGCCTTTGCAATGAGTGTTGGG GCTATGGGTGCTGCAAGTTGGGCCTGGGGTTTAAATCTGGCTGACTTGGCTTCGTGGTAG |
| Transcript | >Ani_SJS100_1|g5563.t1 ATGAAACCATACATCGGTATGCCAGCGGTGATAGTGCTCGTTCATCGTGCTTGGTCGCGAAAGTCGCTGACCACC CCCGGCCTCATTGCGGCTGCGCTGACGGCCAGCGCCCATGCTCTTCATCCATGGTCCGCTCCTTTTGTCTTATTA GGAGTATTCTACTTTGGGGGCACCAAAGTTACCAAGGTTAAACACGATGTCAAAGCTCGTTTGACGCTCTCCGCG ACCGGCTCCGAGGGCGGCGAGGGTCAACGTACCCACATCCAAGTCCTGGCGAACTCTGTTGTCGCGACAGTGCTT GCTCTCCTACATACATATGTTCTGGCAGGGAAGCCTGCGAGCGCAACACAGTGCTTTTCGAATGGTCATGATGTG GCGGATCTGTTGGTCGTGGGAATAGTCGCGAACTACGCCGCTGTCGCCGCTGATACATACTCCTCCGAGCTTGGT ATTCTGTCCAAGTCCAAACCCCGCCTGATCACCTCTCCCACGTTCCGCGTTGTCCCCCCCGGTACCAATGGCGGT GTAACGGGCACCGGACTCCTAGCAGGAGTGCTGGGTGCATTTACAATTGCCGTGTCATCCGCTGCTATTCTACCT TTCTGCTCCGAAGGCGATACTCTCTCGACACTCAAGAGCCGGGCTCAGTGGATTCTGGCTGTGACAATGTGGGGA GGTTTGGGCAGTGTGCTGGATAGTGTCTTGGGTGGATTGCTCCAGGCCAGCGTGGTGGACAAGAGAACAGGAAAG GTCATCGAAGGAGCCGGTGGCCAGAAGGTCCTTGTTCACCCCTCTTCTACTAAGCCCGGCGTCCCAGCTGATACC ACCGGTCTGAAGCCTGCCGGATCAAGCTCGAGTGCGCAGGTACACGCCACAGAGGCAGTCGCTAACACTGCCACT CTGAAAGGAACCAGGGCTACTGGAACGTCGACGGGGACGTCCGCAGGAGAAATTGAATCGGGACACGAAAGCCGG AGGGTAGAGAGTGGACGGGACCTCTTGGATAACAATGCCGTGAATCTTCTGATGGCCTTTGCAATGAGTGTTGGG GCTATGGGTGCTGCAAGTTGGGCCTGGGGTTTAAATCTGGCTGACTTGGCTTCGTGGTAG |
| Gene | >Ani_SJS100_1|g5563.t1 ATGAAACCATACATCGGTATGCCAGCGGTGATAGTGCTCGTTCATCGTGCTTGGTCGCGAAAGTCGCTGACCACC CCCGGCCTCATTGCGGCTGCGCTGACGGCCAGCGCCCATGCTCTTCATCCATGGTCCGCTCCTTTTGTCTTATTA GGAGTATTCTACTTTGGGGGCACCAAAGTTACCAAGGTATATATCCTCTCCAACATCGTCGATCCGCGGTTTGTA ATTGCTAATCGCACACTTGCCAGGTTAAACACGATGTCAAAGCTCGTTTGACGCTCTCCGCGACCGGCTCCGAGG GCGGCGAGGGTCAACGTACCCACATCCAAGTCCTGGCGAACTCTGTTGTCGCGACAGTGCTTGCTCTCCTACATA CATATGTTCTGGCAGGGAAGCCTGCGAGCGCAACACAGTGCTTTTCGAATGGTCATGATGTGGCGGATCTGTTGG TCGTGGGAATAGTCGCGTAAGACTTACCTCTATTCCTTACCCTTTGTTATGCGCTTGCTGACAGGTCATCGTTGT AGGAACTACGCCGCTGTCGCCGCTGATACATACTCCTCCGAGCTTGGTATTCTGTCCAAGTCCAAACCCCGCCTG ATCACCTCTCCCACGTTCCGCGTTGTCCCCCCCGGTACCAATGGCGGTGTAACGGGCACCGGACTCCTAGCAGGA GTGCTGGGTGCATTTACAATTGCCGTGTCATCCGCTGCTATTCTACCTTTCTGCTCCGAAGGCGATACTCTCTCG ACACTCAAGAGCCGGGCTCAGTGGATTCTGGCTGTGACAATGTGGGGAGGTTTGGGCAGTGTGCTGGATAGTGTC TTGGGTGGATTGCTCCAGGCCAGCGTGGTGGACAAGAGAACAGGAAAGGTCATCGAAGGAGCCGGTGGCCAGAAG GTCAGCACATGATTAACATCTACCGGATTGTTAGGAAGAGGATAGTGCTGATATTGTCATGCAGGTCCTTGTTCA CCCCTCTTCTACTAAGCCCGGCGTCCCAGCTGATACCACCGGTCTGAAGCCTGCCGGATCAAGCTCGAGTGCGCA GGTACACGCCACAGAGGCAGTCGCTAACACTGCCACTCTGAAAGGAACCAGGGCTACTGGAACGTCGACGGGGAC GTCCGCAGGAGAAATTGAATCGGGACACGAAAGCCGGAGGGTAGAGAGTGGACGGGACCTCTTGGATAACAATGC CGTGAATCTTCTGATGGCCTTTGCAATGAGTGTTGGGGCTATGGGTGCTGCAAGTTGGGCCTGGGGTTTAAATCT GGCTGACTTGGCTTCGTGGTAG |