© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5544.t1 |
| Gene name | |
| Location | scaffold_031:233804..235199 |
| Strand | - |
| Gene length (bp) | 1395 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02176 | zf-TRAF | TRAF-type zinc finger | 5.8E-05 | 99 | 153 |
| PF02176 | zf-TRAF | TRAF-type zinc finger | 3.4E-09 | 181 | 238 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.1E-07 | 39 | 80 |
| PF13639 | zf-RING_2 | Ring finger domain | 3.0E-06 | 38 | 83 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.0E-05 | 39 | 82 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5544.t1 MTSITLDELLAMEANCDRDEVVDLRSLELVSSYDDHLMCPICHCPFVRPVRLQCDHVFCQKCLNTAITAFSASRD DFTCPTCRTPTRGVYLNVPRLLLNMCDDIKVRCPFRDEGCEEIIPRGHIQSHVDKYCGYRLMKCPDSSCNKTTRK KDLSSEGRCLHELQRCLRCDEYVAEQDYEEHVKDLCPSLKTTCPDCQISVLRKSLREHIDSCPEVVHPCAASKYG CPVKVKRADLTTHEQTCPLIAMGPYFEAQNARLDSLELTIRHLQQRNEIFEDGISNIRSTLAQSTRTLAEQDPPT NSDAPRRRDSASNQSQIDSSNLYTATTTNYLLSLHESLREEVGQLSNAITDLDARASMALMNECLRLKEDMAHTN AAVGSIRMQVQWLLNPRLHQGQRAGARPNNASGSNGSPASASGPSSAAGPSTAFLRPRRLSDSGREGTKL* |
| Coding | >Ani_SJS100_1|g5544.t1 ATGACGAGCATCACCCTCGATGAACTGCTCGCGATGGAGGCGAACTGCGACCGAGACGAAGTTGTCGACTTGCGC TCACTAGAACTGGTCTCCAGCTACGATGACCACCTCATGTGCCCGATATGTCACTGCCCTTTCGTTCGCCCCGTG CGCCTTCAGTGTGATCATGTCTTCTGTCAGAAGTGTCTAAATACTGCCATCACTGCGTTTTCCGCCAGCCGAGAC GACTTCACCTGTCCCACCTGCCGGACTCCCACGAGGGGTGTCTACCTCAACGTGCCTCGTCTGCTACTCAATATG TGTGATGATATCAAAGTGCGATGTCCTTTTCGGGATGAAGGTTGCGAGGAGATTATACCAAGAGGTCATATTCAG TCTCATGTCGACAAGTATTGTGGCTACAGGCTCATGAAGTGTCCGGATAGCTCTTGCAACAAGACGACCCGGAAG AAGGACCTCAGTTCTGAGGGCCGGTGCTTGCATGAGCTTCAACGCTGTCTACGATGCGACGAGTATGTCGCGGAA CAAGATTACGAGGAACATGTCAAGGATCTATGCCCGAGTCTTAAAACAACATGTCCCGACTGCCAGATAAGCGTC CTACGCAAATCACTGCGGGAACACATCGACTCCTGCCCCGAGGTTGTCCATCCTTGCGCGGCCTCGAAATACGGC TGTCCCGTCAAGGTCAAGCGTGCAGACCTGACGACACACGAACAGACTTGTCCGCTGATAGCCATGGGCCCGTAT TTTGAAGCGCAGAATGCACGACTCGATTCTCTTGAACTTACCATCCGTCACCTTCAACAGCGGAACGAGATTTTC GAGGACGGAATTTCCAACATCCGCTCGACATTAGCCCAGTCGACTCGTACTCTAGCCGAGCAAGATCCCCCGACA AATTCCGATGCCCCTCGTCGACGAGATTCGGCAAGCAATCAATCTCAGATCGACAGCTCTAACCTCTATACTGCC ACTACAACGAACTACTTACTCTCCCTCCACGAGTCTCTTCGCGAAGAGGTCGGACAGCTCTCCAACGCCATCACA GATCTAGACGCCCGTGCTAGCATGGCTCTCATGAACGAATGTCTTCGCTTAAAAGAAGACATGGCGCACACCAAC GCAGCCGTGGGCAGCATTCGCATGCAGGTGCAGTGGCTCTTGAACCCTCGTCTGCATCAGGGCCAGCGAGCAGGT GCACGTCCAAACAACGCTAGTGGCAGCAACGGCAGCCCTGCGTCTGCGTCCGGGCCGAGTAGTGCCGCTGGTCCT TCTACTGCTTTTCTTCGACCGCGGAGACTCAGCGATAGCGGACGAGAGGGGACCAAACTATGA |
| Transcript | >Ani_SJS100_1|g5544.t1 ATGACGAGCATCACCCTCGATGAACTGCTCGCGATGGAGGCGAACTGCGACCGAGACGAAGTTGTCGACTTGCGC TCACTAGAACTGGTCTCCAGCTACGATGACCACCTCATGTGCCCGATATGTCACTGCCCTTTCGTTCGCCCCGTG CGCCTTCAGTGTGATCATGTCTTCTGTCAGAAGTGTCTAAATACTGCCATCACTGCGTTTTCCGCCAGCCGAGAC GACTTCACCTGTCCCACCTGCCGGACTCCCACGAGGGGTGTCTACCTCAACGTGCCTCGTCTGCTACTCAATATG TGTGATGATATCAAAGTGCGATGTCCTTTTCGGGATGAAGGTTGCGAGGAGATTATACCAAGAGGTCATATTCAG TCTCATGTCGACAAGTATTGTGGCTACAGGCTCATGAAGTGTCCGGATAGCTCTTGCAACAAGACGACCCGGAAG AAGGACCTCAGTTCTGAGGGCCGGTGCTTGCATGAGCTTCAACGCTGTCTACGATGCGACGAGTATGTCGCGGAA CAAGATTACGAGGAACATGTCAAGGATCTATGCCCGAGTCTTAAAACAACATGTCCCGACTGCCAGATAAGCGTC CTACGCAAATCACTGCGGGAACACATCGACTCCTGCCCCGAGGTTGTCCATCCTTGCGCGGCCTCGAAATACGGC TGTCCCGTCAAGGTCAAGCGTGCAGACCTGACGACACACGAACAGACTTGTCCGCTGATAGCCATGGGCCCGTAT TTTGAAGCGCAGAATGCACGACTCGATTCTCTTGAACTTACCATCCGTCACCTTCAACAGCGGAACGAGATTTTC GAGGACGGAATTTCCAACATCCGCTCGACATTAGCCCAGTCGACTCGTACTCTAGCCGAGCAAGATCCCCCGACA AATTCCGATGCCCCTCGTCGACGAGATTCGGCAAGCAATCAATCTCAGATCGACAGCTCTAACCTCTATACTGCC ACTACAACGAACTACTTACTCTCCCTCCACGAGTCTCTTCGCGAAGAGGTCGGACAGCTCTCCAACGCCATCACA GATCTAGACGCCCGTGCTAGCATGGCTCTCATGAACGAATGTCTTCGCTTAAAAGAAGACATGGCGCACACCAAC GCAGCCGTGGGCAGCATTCGCATGCAGGTGCAGTGGCTCTTGAACCCTCGTCTGCATCAGGGCCAGCGAGCAGGT GCACGTCCAAACAACGCTAGTGGCAGCAACGGCAGCCCTGCGTCTGCGTCCGGGCCGAGTAGTGCCGCTGGTCCT TCTACTGCTTTTCTTCGACCGCGGAGACTCAGCGATAGCGGACGAGAGGGGACCAAACTATGA |
| Gene | >Ani_SJS100_1|g5544.t1 ATGACGAGCATCACCCTCGATGAACTGCTCGCGATGGAGGCGAACTGCGACCGAGACGAAGTTGTCGACTTGCGC TCACTAGAACTGGTCTCCAGCTACGATGACCACCTCATGTGCCCGATATGTCACTGCCCTTTCGTTCGCCCCGTG CGCCTTCAGTGTGATCATGTCTTCTGTCAGAAGTGTCTAAATACTGCCATCACTGCGTTTTCCGCCAGCCGAGAC GACTTCACCTGTCCCACCTGCCGGACTCCCACGAGGGGTGTCTACCTCAACGTGCCTCGTCTGCTACTCAATATG TGTGATGATATCAAAGTGCGATGTCCTTTTCGGGATGAAGGTTGCGAGGAGATTATACCAAGAGGTCATATTCAG TCTCATGTCGACAAGTATTGTGGCTACAGGCTCATGAAGTGTCCGGATAGCTCTTGCAACAAGACGACCCGGAAG AAGGACCTCAGTTCTGAGGGCCGGTGCTTGCATGAGCTTCAACGCTGTCTACGATGCGACGAGTATGTCGCGGAA CAAGATTACGAGGTATGGGAGTTGCCTTCATACCATAGAATACTGCTAATCAGATTTCTTTGTCTACAGGAACAT GTCAAGGATCTATGCCCGAGTCTTAAAACAACATGTCCCGACTGCCAGATAAGCGTCCTACGCAAATCACTGCGG GAACACATCGACTCCTGCCCCGAGGTTGTCCATCCTTGCGCGGCCTCGAAATACGGCTGTCCCGTCAAGGTCAAG CGTGCAGACCTGACGACACACGAACAGACTTGTCCGCTGATAGCCATGGGCCCGTATTTTGAAGCGCAGAATGCA CGACTCGATTCTCTTGAACTTACCATCCGTCACCTTCAACAGCGGAACGAGATTTTCGAGGACGGAATTTCCAAC ATCCGCTCGACATTAGCCCAGTCGACTCGTACTCTAGCCGAGCAAGATCCCCCGACAAATTCCGATGCCCCTCGT CGACGAGATTCGGCAAGCAATCAATCTCAGATCGACAGCTCTAACCTCTATACTGCCACTACAACGAACTACTTA CTCTCCCTCCACGAGTCTCTTCGCGAAGAGGTCGGACAGCTCTCCAACGCCATCACAGATCTAGACGCCCGTGCT AGCATGGCTCTCATGAACGAATGTCTTCGCTTAAAAGAAGACATGGCGCACACCAACGCAGCCGTGGGCAGCATT CGCATGCAGGTGCAGTGGCTCTTGAACCCTCGTCTGCATCAGGGCCAGCGAGCAGGTGCACGTCCAAACAACGCT AGTGGCAGCAACGGCAGCCCTGCGTCTGCGTCCGGGCCGAGTAGTGCCGCTGGTCCTTCTACTGCTTTTCTTCGA CCGCGGAGACTCAGCGATAGCGGACGAGAGGGGACCAAACTATGA |