© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5530.t1 |
| Gene name | |
| Location | scaffold_031:192150..193292 |
| Strand | - |
| Gene length (bp) | 1142 |
| Transcript length (bp) | 1083 |
| Coding sequence length (bp) | 1083 |
| Protein length (aa) | 361 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 7.5E-17 | 10 | 147 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.1E-17 | 217 | 354 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 24 | 19 |
| 2 | 71 | 93 | 22 |
| 3 | 108 | 125 | 17 |
| 4 | 132 | 151 | 19 |
| 5 | 216 | 238 | 22 |
| 6 | 243 | 262 | 19 |
| 7 | 277 | 299 | 22 |
| 8 | 312 | 334 | 22 |
| 9 | 339 | 358 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5530.t1 MDWDALWFNVATLIAGVFVLDYGADKFIDHTVIVGRRLGISQTVIALLTAGAEWEELAVVIAAILQHRSPLALGN VMGSTISNILGAFSLGLLFYPQGVEFDRSAKLYSALLFMVTTLFVVLAFFNQLNQIVGGVLIAIFGLYIVSIIYA IYKGVASPPELSDSDSDGESSDSEDGDGESINHAPVSETSPLIENEPAPSSADKESRRSRSLPYHIFQLILGFIS LSMSGYILSHSAVTIADSLHLSGSVFGLTVVSFATTLPEKLVAIISGSRGHGGIMAATTAGSNIFLLTLCVGVVA VAGYQVQEADNFVLFELVAVWVSSGAFCAVIFLGLGRSAGVVLLVAYLVFLCLEFTVYRR* |
| Coding | >Ani_SJS100_1|g5530.t1 ATGGATTGGGATGCTTTGTGGTTCAACGTTGCCACGTTAATTGCAGGGGTGTTTGTCCTTGACTATGGCGCAGAC AAGTTCATCGACCACACCGTTATTGTTGGGCGGCGCCTTGGTATCTCGCAAACTGTTATTGCCCTCTTGACAGCT GGCGCTGAATGGGAAGAGCTCGCTGTGGTGATTGCCGCCATCCTGCAGCATCGCAGCCCCCTAGCCCTTGGGAAC GTCATGGGCTCGACTATCTCCAACATTCTCGGTGCCTTTTCTTTGGGACTACTCTTCTACCCCCAAGGCGTGGAG TTTGATCGCAGCGCAAAGTTATACTCGGCGCTGCTGTTCATGGTTACCACGCTCTTCGTGGTGTTAGCATTCTTC AACCAATTGAACCAGATCGTCGGCGGGGTTTTGATTGCCATATTTGGTCTCTACATCGTCTCTATCATCTACGCC ATCTATAAAGGTGTAGCATCGCCCCCGGAGCTATCAGACAGTGATAGTGACGGGGAATCCAGCGATAGCGAGGAC GGGGACGGGGAATCCATCAATCATGCACCTGTCTCCGAGACATCGCCTCTCATTGAGAATGAGCCTGCGCCTTCA TCAGCTGACAAAGAAAGCAGACGAAGCAGAAGCCTCCCCTATCACATATTCCAGCTCATTCTCGGATTCATCTCG CTCTCAATGTCAGGATATATCCTCTCCCACAGCGCCGTCACCATCGCCGACTCCCTGCACCTCTCGGGATCTGTC TTCGGTCTGACCGTTGTCTCGTTCGCCACCACTCTTCCAGAGAAGCTGGTTGCAATCATTAGTGGCTCCCGCGGC CACGGCGGCATTATGGCTGCGACGACTGCAGGAAGCAACATTTTCTTGCTGACGCTCTGTGTTGGTGTCGTTGCA GTGGCGGGGTACCAGGTACAAGAGGCAGATAATTTTGTGCTTTTTGAGCTGGTGGCCGTGTGGGTGTCCTCTGGG GCATTTTGTGCTGTTATCTTTTTGGGACTGGGGAGGAGTGCAGGTGTAGTTCTCTTAGTTGCCTACCTCGTGTTC CTTTGCCTGGAGTTTACCGTTTACCGGCGCTGA |
| Transcript | >Ani_SJS100_1|g5530.t1 ATGGATTGGGATGCTTTGTGGTTCAACGTTGCCACGTTAATTGCAGGGGTGTTTGTCCTTGACTATGGCGCAGAC AAGTTCATCGACCACACCGTTATTGTTGGGCGGCGCCTTGGTATCTCGCAAACTGTTATTGCCCTCTTGACAGCT GGCGCTGAATGGGAAGAGCTCGCTGTGGTGATTGCCGCCATCCTGCAGCATCGCAGCCCCCTAGCCCTTGGGAAC GTCATGGGCTCGACTATCTCCAACATTCTCGGTGCCTTTTCTTTGGGACTACTCTTCTACCCCCAAGGCGTGGAG TTTGATCGCAGCGCAAAGTTATACTCGGCGCTGCTGTTCATGGTTACCACGCTCTTCGTGGTGTTAGCATTCTTC AACCAATTGAACCAGATCGTCGGCGGGGTTTTGATTGCCATATTTGGTCTCTACATCGTCTCTATCATCTACGCC ATCTATAAAGGTGTAGCATCGCCCCCGGAGCTATCAGACAGTGATAGTGACGGGGAATCCAGCGATAGCGAGGAC GGGGACGGGGAATCCATCAATCATGCACCTGTCTCCGAGACATCGCCTCTCATTGAGAATGAGCCTGCGCCTTCA TCAGCTGACAAAGAAAGCAGACGAAGCAGAAGCCTCCCCTATCACATATTCCAGCTCATTCTCGGATTCATCTCG CTCTCAATGTCAGGATATATCCTCTCCCACAGCGCCGTCACCATCGCCGACTCCCTGCACCTCTCGGGATCTGTC TTCGGTCTGACCGTTGTCTCGTTCGCCACCACTCTTCCAGAGAAGCTGGTTGCAATCATTAGTGGCTCCCGCGGC CACGGCGGCATTATGGCTGCGACGACTGCAGGAAGCAACATTTTCTTGCTGACGCTCTGTGTTGGTGTCGTTGCA GTGGCGGGGTACCAGGTACAAGAGGCAGATAATTTTGTGCTTTTTGAGCTGGTGGCCGTGTGGGTGTCCTCTGGG GCATTTTGTGCTGTTATCTTTTTGGGACTGGGGAGGAGTGCAGGTGTAGTTCTCTTAGTTGCCTACCTCGTGTTC CTTTGCCTGGAGTTTACCGTTTACCGGCGCTGA |
| Gene | >Ani_SJS100_1|g5530.t1 ATGGATTGGGATGCTTTGTGGTTCAACGTTGCCACGTTAATTGCAGGGGTGTTTGTCCTTGACTATGGCGCAGAC AAGTTCATCGACCACACCGTTATTGTTGGGCGGCGCCTTGGTATCTCGCAAACTGTTATTGCCCTCTTGACAGCT GGCGCTGAATGGGAAGAGGTGTTTTGCAATTCAGTGCAATCCGATCCAATGTCTATCCTGGCTAATCTCTTCACT AGCTCGCTGTGGTGATTGCCGCCATCCTGCAGCATCGCAGCCCCCTAGCCCTTGGGAACGTCATGGGCTCGACTA TCTCCAACATTCTCGGTGCCTTTTCTTTGGGACTACTCTTCTACCCCCAAGGCGTGGAGTTTGATCGCAGCGCAA AGTTATACTCGGCGCTGCTGTTCATGGTTACCACGCTCTTCGTGGTGTTAGCATTCTTCAACCAATTGAACCAGA TCGTCGGCGGGGTTTTGATTGCCATATTTGGTCTCTACATCGTCTCTATCATCTACGCCATCTATAAAGGTGTAG CATCGCCCCCGGAGCTATCAGACAGTGATAGTGACGGGGAATCCAGCGATAGCGAGGACGGGGACGGGGAATCCA TCAATCATGCACCTGTCTCCGAGACATCGCCTCTCATTGAGAATGAGCCTGCGCCTTCATCAGCTGACAAAGAAA GCAGACGAAGCAGAAGCCTCCCCTATCACATATTCCAGCTCATTCTCGGATTCATCTCGCTCTCAATGTCAGGAT ATATCCTCTCCCACAGCGCCGTCACCATCGCCGACTCCCTGCACCTCTCGGGATCTGTCTTCGGTCTGACCGTTG TCTCGTTCGCCACCACTCTTCCAGAGAAGCTGGTTGCAATCATTAGTGGCTCCCGCGGCCACGGCGGCATTATGG CTGCGACGACTGCAGGAAGCAACATTTTCTTGCTGACGCTCTGTGTTGGTGTCGTTGCAGTGGCGGGGTACCAGG TACAAGAGGCAGATAATTTTGTGCTTTTTGAGCTGGTGGCCGTGTGGGTGTCCTCTGGGGCATTTTGTGCTGTTA TCTTTTTGGGACTGGGGAGGAGTGCAGGTGTAGTTCTCTTAGTTGCCTACCTCGTGTTCCTTTGCCTGGAGTTTA CCGTTTACCGGCGCTGA |