© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g548.t1 |
| Gene name | |
| Location | scaffold_002:290728..293247 |
| Strand | - |
| Gene length (bp) | 2519 |
| Transcript length (bp) | 2457 |
| Coding sequence length (bp) | 2457 |
| Protein length (aa) | 819 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16203 | ERCC3_RAD25_C | ERCC3/RAD25/XPB C-terminal helicase | 5.8E-127 | 510 | 747 |
| PF13625 | Helicase_C_3 | Helicase conserved C-terminal domain | 8.8E-36 | 91 | 215 |
| PF04851 | ResIII | Type III restriction enzyme, res subunit | 1.3E-13 | 329 | 484 |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | 5.7E-13 | 557 | 660 |
| PF00176 | SNF2-rel_dom | SNF2-related domain | 8.7E-10 | 346 | 493 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0140658 | ATP-dependent chromatin remodeler activity | Yes |
| GO:0032553 | ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0008094 | ATP-dependent activity, acting on DNA | No |
| GO:0003674 | molecular_function | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0140097 | catalytic activity, acting on DNA | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g548.t1 MPIKRKATDSGRSSRASKRPTPVPDIGSSDEYSDYEEEVKDDNLKGVLEKFSLESFSNKKSAAVQRQDPDFGYKD FSSLSLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLLPQD IINFLDRLSKTPLPDTIKSFILDFTKSYGKIKVVLKHNRFFVESTDPAMLQMLLQDEVIGSQRLKGTEGIIQQAA PKMGGLVIPGTKDAAGVRQASEQKPAEDGAGEARKEDDILLAIRDDDDDEEEVQVHSFEIPNEAVEPVKARCQAM GCPALEEYDFRNDEINPTLDIDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGITAGCTIKKGTI VLCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWG LMILDEVHVVPASMFRKVTSAIACQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVW CPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVIVFSDNVYALQRYALKLNKAYIYGGTPQ NERMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRRNDEGFNAFFYSL VSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGLAYATPSERRELLQEVMLQNETSAEVEHVTDDLFSG RSGGQRKGAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKVGHHPLFRKLERERLKRKKELEDFMR* |
| Coding | >Ani_SJS100_1|g548.t1 ATGCCAATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCGGAT ATCGGTAGTAGTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGATGATAACCTGAAAGGTGTCTTGGAGAAA TTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCCGCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGGAC TTTTCCTCGCTATCGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAGGGAACTATTACC TTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAGGACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCG ACCCATCTGCACGAATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTGCTGCCCCAGGAT ATCATCAACTTTCTAGATCGATTGTCGAAAACGCCGCTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCACG AAATCATACGGAAAGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGATCCGGCGATGTTG CAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAGCGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCC CCGAAAATGGGCGGCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCGGAGCAGAAGCCG GCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGACGATATTCTGCTGGCTATTCGCGACGACGATGACGACGAG GAGGAAGTTCAAGTGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGCTGTCAGGCTATG GGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAATGATGAGATCAATCCCACCTTGGATATCGACTTGAAGCCG GCAGCACGAATTCGAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCGAAGAGTGGAATT ATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTGGGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAATT GTCTTGTGTACCAGTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAATATTGATCCCGGT GATATTGCGGTTTTCACCTCAGATAACAAGGAGAAATTCCGTCGATCGACTGGTATCATCGTGTCAACCTACTCC ATGGTGTCCCAGACGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGTCACGAGAGTGGGGT CTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCATCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAG AGTAAATTGGGATTGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTCCTGATTGGTCCC AAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAGCAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGG TGTCCGATGACGACCGAATTCTACTCGGAGTACATGAGAGAAAAGTCACGAAAGGCTGCTCTTCTATACATTATG AACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATCGACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTT TCCGACAACGTTTACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACGGCGGTACTCCACAG AACGAGCGCATGCGCATTTTGGAGAATTTCCAGCACAATGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGA GACACGTCGCTCGATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCCCGTCGTCAGGAA GCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGTCGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTT GTGTCGAAAGACACAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAGGGCTACGCGTTC AAGGTCATTACTCACCTGCAAGGCATCGAGAACCTGGAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAG CTGCTGCAGGAGGTGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGATCTCTTCTCAGGA CGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGCAGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGAC ATGGCGTATATCGAGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCACCCGCTGTTCCGG AAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAGTTGGAGGATTTCATGCGGTAG |
| Transcript | >Ani_SJS100_1|g548.t1 ATGCCAATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCGGAT ATCGGTAGTAGTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGATGATAACCTGAAAGGTGTCTTGGAGAAA TTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCCGCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGGAC TTTTCCTCGCTATCGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAGGGAACTATTACC TTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAGGACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCG ACCCATCTGCACGAATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTGCTGCCCCAGGAT ATCATCAACTTTCTAGATCGATTGTCGAAAACGCCGCTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCACG AAATCATACGGAAAGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGATCCGGCGATGTTG CAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAGCGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCC CCGAAAATGGGCGGCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCGGAGCAGAAGCCG GCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGACGATATTCTGCTGGCTATTCGCGACGACGATGACGACGAG GAGGAAGTTCAAGTGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGCTGTCAGGCTATG GGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAATGATGAGATCAATCCCACCTTGGATATCGACTTGAAGCCG GCAGCACGAATTCGAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCGAAGAGTGGAATT ATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTGGGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAATT GTCTTGTGTACCAGTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAATATTGATCCCGGT GATATTGCGGTTTTCACCTCAGATAACAAGGAGAAATTCCGTCGATCGACTGGTATCATCGTGTCAACCTACTCC ATGGTGTCCCAGACGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGTCACGAGAGTGGGGT CTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCATCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAG AGTAAATTGGGATTGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTCCTGATTGGTCCC AAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAGCAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGG TGTCCGATGACGACCGAATTCTACTCGGAGTACATGAGAGAAAAGTCACGAAAGGCTGCTCTTCTATACATTATG AACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATCGACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTT TCCGACAACGTTTACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACGGCGGTACTCCACAG AACGAGCGCATGCGCATTTTGGAGAATTTCCAGCACAATGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGA GACACGTCGCTCGATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCCCGTCGTCAGGAA GCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGTCGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTT GTGTCGAAAGACACAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAGGGCTACGCGTTC AAGGTCATTACTCACCTGCAAGGCATCGAGAACCTGGAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAG CTGCTGCAGGAGGTGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGATCTCTTCTCAGGA CGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGCAGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGAC ATGGCGTATATCGAGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCACCCGCTGTTCCGG AAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAGTTGGAGGATTTCATGCGGTAG |
| Gene | >Ani_SJS100_1|g548.t1 ATGCCAATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCGGAT ATCGGTAGTAGTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGATGATAACCTGAAAGGTAGCGTAGAAGTG GAGTCTCGTTCATATGGGGTCTGCTTGCTGACATCTTCTGCTTGCAAGGTGTCTTGGAGAAATTCTCTCTCGAAT CTTTTAGCAACAAGAAGAGCGCCGCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGGACTTTTCCTCGCTAT CGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAGGGAACTATTACCTTGGAGAGTTTCT CCCCTCTGGCACCCCAGGCGCAGGACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCACG AATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTGCTGCCCCAGGATATCATCAACTTTC TAGATCGATTGTCGAAAACGCCGCTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCACGAAATCATACGGAA AGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGATCCGGCGATGTTGCAGATGCTGCTGC AGGATGAAGTTATTGGTTCTCAGCGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGGCG GCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCGGAGCAGAAGCCGGCGGAAGACGGTG CAGGCGAGGCTCGTAAAGAGGACGATATTCTGCTGGCTATTCGCGACGACGATGACGACGAGGAGGAAGTTCAAG TGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGCTGTCAGGCTATGGGCTGTCCAGCAT TGGAGGAGTATGATTTCCGAAATGATGAGATCAATCCCACCTTGGATATCGACTTGAAGCCGGCAGCACGAATTC GAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCGAAGAGTGGAATTATCGTCTTGCCTT GTGGTGCCGGAAAAACGTTGGTGGGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCTTGTGTACCA GTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAATATTGATCCCGGTGATATTGCGGTTT TCACCTCAGATAACAAGGAGAAATTCCGTCGATCGACTGGTATCATCGTGTCAACCTACTCCATGGTGTCCCAGA CGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGTCACGAGAGTGGGGTCTGATGATTCTTG ACGAGGTGCACGTCGTGCCTGCATCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTAAATTGGGAT TGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTCCTGATTGGTCCCAAGTTGTACGAAG CCAACTGGATGGAACTGGCCGAGCAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGACGA CCGAATTCTACTCGGAGTACATGAGAGAAAAGTCACGAAAGGCTGCTCTTCTATACATTATGAACCCTCGGAAAT TCCAAGCATGCCAGTTCCTGATCGACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCGACAACGTTT ACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACGGCGGTACTCCACAGAACGAGCGCATGC GCATTTTGGAGAATTTCCAGCACAATGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGAGACACGTCGCTCG ATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCCCGTCGTCAGGAAGCCCAACGACTTG GTCGGATTCTGCGAGCCAAGCGTCGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGACA CAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAGGGCTACGCGTTCAAGGTCATTACTC ACCTGCAAGGCATCGAGAACCTGGAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGAGG TGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGATCTCTTCTCAGGACGTTCGGGCGGCC AGCGAAAGGGAGCAGTCAAGCGCAGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGGCGTATATCG AGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCACCCGCTGTTCCGGAAGCTGGAGCGGG AACGACTCAAGCGGAAGAAGGAGTTGGAGGATTTCATGCGGTAG |