© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5401.t1 |
| Gene name | |
| Location | scaffold_030:136394..137156 |
| Strand | + |
| Gene length (bp) | 762 |
| Transcript length (bp) | 567 |
| Coding sequence length (bp) | 567 |
| Protein length (aa) | 189 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01127 | Sdh_cyt | Succinate dehydrogenase/Fumarate reductase transmembrane subunit | 2.3E-25 | 63 | 184 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 84 | 106 | 22 |
| 2 | 121 | 143 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5401.t1 MLSQKVAQQSLRRLAVQQPYALRWSLMNSVSPAAVALGRTVQTRHAATSSNSSDPTKLLAQQRLNRPVSPHLSIY RPQITWIGSSIHRITGIALSGSLYLYASAYLASPMLGWDLGSASAAAAFAALPVVAKVALKTTMALPFTYHCMNG VRHLIWDTGAGLTNPQVIKSGWTVVGLSTLSALILAFL* |
| Coding | >Ani_SJS100_1|g5401.t1 ATGCTCTCTCAGAAGGTTGCTCAGCAATCGTTGCGGCGGCTTGCCGTCCAGCAGCCCTACGCTCTGCGTTGGTCT TTGATGAACTCGGTTTCTCCGGCTGCCGTTGCTCTTGGAAGAACCGTTCAGACTAGACATGCTGCTACCTCCTCC AACTCCTCCGACCCTACCAAGCTCCTCGCCCAGCAGCGTCTCAACCGCCCCGTCTCTCCCCACCTTAGCATCTAC CGTCCCCAGATCACATGGATCGGCAGTAGTATCCACCGTATCACCGGTATTGCGCTGTCCGGAAGTCTCTACCTC TATGCCAGTGCCTACCTCGCCTCTCCCATGCTCGGCTGGGATCTGGGCTCTGCCTCCGCCGCCGCCGCTTTCGCC GCTCTCCCTGTTGTCGCCAAGGTTGCCCTGAAGACTACCATGGCCCTGCCTTTCACCTACCACTGCATGAACGGC GTGCGCCACCTCATTTGGGATACTGGTGCTGGTCTTACCAACCCCCAGGTCATCAAGTCCGGCTGGACTGTGGTG GGTTTGAGTACTCTTAGCGCTCTTATTCTTGCTTTCCTGTGA |
| Transcript | >Ani_SJS100_1|g5401.t1 ATGCTCTCTCAGAAGGTTGCTCAGCAATCGTTGCGGCGGCTTGCCGTCCAGCAGCCCTACGCTCTGCGTTGGTCT TTGATGAACTCGGTTTCTCCGGCTGCCGTTGCTCTTGGAAGAACCGTTCAGACTAGACATGCTGCTACCTCCTCC AACTCCTCCGACCCTACCAAGCTCCTCGCCCAGCAGCGTCTCAACCGCCCCGTCTCTCCCCACCTTAGCATCTAC CGTCCCCAGATCACATGGATCGGCAGTAGTATCCACCGTATCACCGGTATTGCGCTGTCCGGAAGTCTCTACCTC TATGCCAGTGCCTACCTCGCCTCTCCCATGCTCGGCTGGGATCTGGGCTCTGCCTCCGCCGCCGCCGCTTTCGCC GCTCTCCCTGTTGTCGCCAAGGTTGCCCTGAAGACTACCATGGCCCTGCCTTTCACCTACCACTGCATGAACGGC GTGCGCCACCTCATTTGGGATACTGGTGCTGGTCTTACCAACCCCCAGGTCATCAAGTCCGGCTGGACTGTGGTG GGTTTGAGTACTCTTAGCGCTCTTATTCTTGCTTTCCTGTGA |
| Gene | >Ani_SJS100_1|g5401.t1 ATGCTCTCTCAGAAGGTTGCTCAGCAATCGTTGCGGCGGCGTACGTACTCACATCATCCTCTTCAGCTAATCGCG CGACACTGACTTCAATGTTGCAGTTGCCGTCCAGCAGCCCTACGCTCTGCGTTGGTCTTTGATGAACTCGGTTTC TCCGGCTGCCGTTGCTCTTGGAAGAACCGTTCAGACTAGGTAAGCTACTACGCGTGATTGGGATTCTTATTTGCG ACTATTTCGACTTGGGAGGGGTTCGCGATATCGAACTCGACGTCATGAAGCGAATGTCGCTAAGTGGAGGCGGAA CACGAATTGCTAACGTTGTCATGCAGACATGCTGCTACCTCCTCCAACTCCTCCGACCCTACCAAGCTCCTCGCC CAGCAGCGTCTCAACCGCCCCGTCTCTCCCCACCTTAGCATCTACCGTCCCCAGATCACATGGATCGGCAGTAGT ATCCACCGTATCACCGGTATTGCGCTGTCCGGAAGTCTCTACCTCTATGCCAGTGCCTACCTCGCCTCTCCCATG CTCGGCTGGGATCTGGGCTCTGCCTCCGCCGCCGCCGCTTTCGCCGCTCTCCCTGTTGTCGCCAAGGTTGCCCTG AAGACTACCATGGCCCTGCCTTTCACCTACCACTGCATGAACGGCGTGCGCCACCTCATTTGGGATACTGGTGCT GGTCTTACCAACCCCCAGGTCATCAAGTCCGGCTGGACTGTGGTGGGTTTGAGTACTCTTAGCGCTCTTATTCTT GCTTTCCTGTGA |