© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5341.t1 |
| Gene name | |
| Location | scaffold_029:317062..317572 |
| Strand | - |
| Gene length (bp) | 510 |
| Transcript length (bp) | 510 |
| Coding sequence length (bp) | 510 |
| Protein length (aa) | 170 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06140 | Ifi-6-16 | Interferon-induced 6-16 family | 3.0E-09 | 111 | 163 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 105 | 127 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5341.t1 MSIIKSILECLWGPSPDVYQTDARTSAVASDIVNILLTGETPEAIQKGLKEQVDANGWSDSIAQAILHGLNDAIT AGAEMAGPAADALNKAKEAAVDFAKEHPAFTILLALGVLAALAPWVLEVLGFGELGPIAGSFAARWQAAYAGYVP RGALFTYFQRLGMKWHWVG* |
| Coding | >Ani_SJS100_1|g5341.t1 ATGTCCATCATCAAGTCGATCCTGGAATGCCTCTGGGGACCATCACCCGACGTCTACCAGACCGATGCGCGCACT TCCGCCGTTGCGTCAGACATTGTCAATATCCTCCTGACCGGTGAAACCCCCGAGGCCATTCAGAAAGGACTGAAA GAACAAGTCGATGCCAACGGGTGGAGCGATTCCATCGCCCAAGCTATCCTCCATGGCCTCAACGACGCTATCACA GCCGGAGCGGAAATGGCTGGCCCTGCTGCCGATGCTCTGAACAAAGCCAAAGAAGCTGCAGTGGATTTTGCCAAA GAGCACCCAGCTTTTACGATCCTTCTTGCTTTGGGGGTGCTGGCGGCATTAGCACCGTGGGTGCTCGAAGTCTTG GGATTCGGGGAGTTGGGACCAATTGCTGGGTCTTTCGCAGCGAGATGGCAAGCAGCATATGCTGGCTATGTGCCT CGAGGTGCACTATTTACGTACTTCCAACGGTTGGGGATGAAGTGGCATTGGGTGGGTTAA |
| Transcript | >Ani_SJS100_1|g5341.t1 ATGTCCATCATCAAGTCGATCCTGGAATGCCTCTGGGGACCATCACCCGACGTCTACCAGACCGATGCGCGCACT TCCGCCGTTGCGTCAGACATTGTCAATATCCTCCTGACCGGTGAAACCCCCGAGGCCATTCAGAAAGGACTGAAA GAACAAGTCGATGCCAACGGGTGGAGCGATTCCATCGCCCAAGCTATCCTCCATGGCCTCAACGACGCTATCACA GCCGGAGCGGAAATGGCTGGCCCTGCTGCCGATGCTCTGAACAAAGCCAAAGAAGCTGCAGTGGATTTTGCCAAA GAGCACCCAGCTTTTACGATCCTTCTTGCTTTGGGGGTGCTGGCGGCATTAGCACCGTGGGTGCTCGAAGTCTTG GGATTCGGGGAGTTGGGACCAATTGCTGGGTCTTTCGCAGCGAGATGGCAAGCAGCATATGCTGGCTATGTGCCT CGAGGTGCACTATTTACGTACTTCCAACGGTTGGGGATGAAGTGGCATTGGGTGGGTTAA |
| Gene | >Ani_SJS100_1|g5341.t1 ATGTCCATCATCAAGTCGATCCTGGAATGCCTCTGGGGACCATCACCCGACGTCTACCAGACCGATGCGCGCACT TCCGCCGTTGCGTCAGACATTGTCAATATCCTCCTGACCGGTGAAACCCCCGAGGCCATTCAGAAAGGACTGAAA GAACAAGTCGATGCCAACGGGTGGAGCGATTCCATCGCCCAAGCTATCCTCCATGGCCTCAACGACGCTATCACA GCCGGAGCGGAAATGGCTGGCCCTGCTGCCGATGCTCTGAACAAAGCCAAAGAAGCTGCAGTGGATTTTGCCAAA GAGCACCCAGCTTTTACGATCCTTCTTGCTTTGGGGGTGCTGGCGGCATTAGCACCGTGGGTGCTCGAAGTCTTG GGATTCGGGGAGTTGGGACCAATTGCTGGGTCTTTCGCAGCGAGATGGCAAGCAGCATATGCTGGCTATGTGCCT CGAGGTGCACTATTTACGTACTTCCAACGGTTGGGGATGAAGTGGCATTGGGTGGGTTAA |