Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g5287.t1
Gene name
Location	scaffold_029:122175..123099
Strand	+
Gene length (bp)	924
Transcript length (bp)	660
Coding sequence length (bp)	660
Protein length (aa)	220

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00319	SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	3.2E-21	61	108

GO

GO Term	Description	Terminal node
GO:0003677	DNA binding	Yes
GO:0046983	protein dimerization activity	Yes
GO:0005515	protein binding	No
GO:0003676	nucleic acid binding	No
GO:0005488	binding	No
GO:1901363	heterocyclic compound binding	No
GO:0097159	organic cyclic compound binding	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 59	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
SRF-type

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g5287.t1 MADITAVGEENPSPTQDDLQQAAGNGAADNRGTKRSRMSADDDDDDDDKPGRERRKIEIKFIQDKSRRHITFSKR KAGIMKKAYELSVLTGTQVLLLVVSETGLVYTFTTPKLQPLVTKAEGKNLIQACLNAPDPTTNENGVDAPEVPAE TPEDVSHSNVNPQQSNIPRPAGMHPGYMTNEQQQQMAYYQGLQQQQQAGGQYPGMPVGNRMPPQHQPTA*
Coding	>Ani_SJS100_1\|g5287.t1 ATGGCCGACATCACTGCCGTCGGTGAGGAGAACCCTTCTCCTACTCAGGACGACCTGCAGCAGGCCGCCGGTAAC GGCGCCGCTGACAACCGCGGCACCAAGCGCTCTCGCATGAGCGCCGACGACGACGACGATGATGATGACAAGCCC GGTCGCGAGCGCAGAAAGATTGAGATCAAATTCATTCAGGATAAGTCGCGTCGCCACATCACCTTCTCCAAGCGG AAGGCGGGTATCATGAAGAAGGCCTACGAACTCTCCGTTCTCACAGGTACCCAAGTACTCCTCCTGGTGGTGTCC GAGACCGGTCTCGTCTATACTTTCACCACCCCGAAGCTTCAACCGCTGGTGACCAAGGCTGAGGGCAAGAACCTC ATTCAGGCCTGCCTGAATGCACCTGATCCCACTACCAATGAGAATGGCGTTGATGCGCCCGAGGTGCCGGCTGAG ACGCCAGAGGATGTCAGCCACAGCAATGTCAACCCTCAACAGTCGAATATCCCCCGTCCCGCCGGTATGCACCCC GGCTACATGACGAACGAACAACAGCAGCAGATGGCCTACTACCAGGGCCTTCAGCAGCAACAGCAGGCAGGAGGA CAGTATCCTGGCATGCCTGTGGGTAACCGGATGCCACCTCAGCACCAGCCCACGGCGTAA
Transcript	>Ani_SJS100_1\|g5287.t1 ATGGCCGACATCACTGCCGTCGGTGAGGAGAACCCTTCTCCTACTCAGGACGACCTGCAGCAGGCCGCCGGTAAC GGCGCCGCTGACAACCGCGGCACCAAGCGCTCTCGCATGAGCGCCGACGACGACGACGATGATGATGACAAGCCC GGTCGCGAGCGCAGAAAGATTGAGATCAAATTCATTCAGGATAAGTCGCGTCGCCACATCACCTTCTCCAAGCGG AAGGCGGGTATCATGAAGAAGGCCTACGAACTCTCCGTTCTCACAGGTACCCAAGTACTCCTCCTGGTGGTGTCC GAGACCGGTCTCGTCTATACTTTCACCACCCCGAAGCTTCAACCGCTGGTGACCAAGGCTGAGGGCAAGAACCTC ATTCAGGCCTGCCTGAATGCACCTGATCCCACTACCAATGAGAATGGCGTTGATGCGCCCGAGGTGCCGGCTGAG ACGCCAGAGGATGTCAGCCACAGCAATGTCAACCCTCAACAGTCGAATATCCCCCGTCCCGCCGGTATGCACCCC GGCTACATGACGAACGAACAACAGCAGCAGATGGCCTACTACCAGGGCCTTCAGCAGCAACAGCAGGCAGGAGGA CAGTATCCTGGCATGCCTGTGGGTAACCGGATGCCACCTCAGCACCAGCCCACGGCGTAA
Gene	>Ani_SJS100_1\|g5287.t1 ATGGCCGACATCACTGCCGTCGGTGAGGAGAACCCTTCTCCTACTCAGGACGACCTGCAGCAGGCCGCCGGTAAC GGCGCCGCTGACAACCGCGGCACCAAGCGCTCTCGCATGAGCGCCGACGACGACGACGATGATGATGACAAGCCC GGTCGCGAGCGCAGAAAGATTGAGATCAAATTCATTCAGGATAAGTCGCGTCGCCACATCACCTTCTCCAAGCGG AAGGCGGGTATCATGAAGAAGGTGCGTGCTGTCGCGTCTCTGCAGCCTCATCTCTCCCCTTCGTTATCGCCGTCA ATTCTGTCGCCAACTCTAGTCTTTTCATGATGCGTCTTTTCTCGTCGTTGTCAAGCTTGTTTTGCACGTTGTCTG CCTGGAACTATTGCCGTTGGATCGGTGCTGACGCCTCAATGCGGTCGCAAAACAGGCCTACGAACTCTCCGTTCT CACAGGTACCCAAGTACTCCTCCTGGTGGTGTCCGAGACCGGTCTCGTCTATACTTTCACCACCCCGAAGCTTCA ACCGCTGGTGACCAAGGCTGAGGGCAAGAACCTCATTCAGGTGAGTGCTGTGCCACTGCTTCCTCTCGTCTACGC GAGTCGAACTCAACGCGACTGACTCCCTCCGTTTCCCATGTACAGGCCTGCCTGAATGCACCTGATCCCACTACC AATGAGAATGGCGTTGATGCGCCCGAGGTGCCGGCTGAGACGCCAGAGGATGTCAGCCACAGCAATGTCAACCCT CAACAGTCGAATATCCCCCGTCCCGCCGGTATGCACCCCGGCTACATGACGAACGAACAACAGCAGCAGATGGCC TACTACCAGGGCCTTCAGCAGCAACAGCAGGCAGGAGGACAGTATCCTGGCATGCCTGTGGGTAACCGGATGCCA CCTCAGCACCAGCCCACGGCGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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