© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5184.t1 |
| Gene name | |
| Location | scaffold_028:163496..164403 |
| Strand | + |
| Gene length (bp) | 907 |
| Transcript length (bp) | 846 |
| Coding sequence length (bp) | 846 |
| Protein length (aa) | 282 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07047 | OPA3 | Optic atrophy 3 protein (OPA3) | 6.5E-47 | 5 | 173 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 126 | 148 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5184.t1 MSLTLKLSSLVIRTLSKPIANQIKAQAREHERFRRICVSMAQGLHRIDMRLRLGNIRDNAASQKRAAAERELRKH KPTSPTVKTEVEAKAEEEAIAKAKAAAEEAAKPAPKPHIRPLSESKAIESGATFISETFLFIVAGGLIVFESWRS RRKETTRREDVETRLAELEQSEKAARLALLALEKELLQQKAKHGELPKSSSRILPREVWDVNQEDEVKPAEEPGL LSWITSYLPWGESPEQRAESVIKESKGAAKPSADAPSSPASKPAEPEPKAPESKKA* |
| Coding | >Ani_SJS100_1|g5184.t1 ATGTCTCTCACCCTCAAGCTCTCCTCCCTTGTCATCCGCACCTTGTCAAAGCCGATCGCCAACCAAATCAAGGCC CAGGCTCGCGAACATGAACGCTTCCGGCGCATCTGCGTCTCCATGGCGCAAGGTCTCCACCGTATCGACATGCGT CTCCGGCTAGGCAACATCCGCGACAACGCCGCATCGCAAAAACGAGCTGCTGCTGAAAGGGAGCTCCGAAAACAC AAACCCACATCCCCAACGGTCAAGACGGAAGTAGAGGCCAAAGCGGAAGAGGAAGCCATTGCGAAAGCCAAAGCA GCGGCAGAGGAGGCAGCGAAGCCGGCACCGAAACCTCATATTCGACCGTTGTCGGAGTCCAAGGCAATCGAGTCT GGTGCCACATTCATCAGCGAAACATTCTTGTTTATAGTTGCAGGAGGGCTGATTGTTTTTGAGTCGTGGCGGTCG CGGAGAAAGGAAACAACCCGCAGGGAGGATGTTGAGACTCGATTGGCCGAGCTGGAGCAGTCTGAGAAGGCCGCT CGGCTAGCACTGTTGGCCTTGGAGAAGGAGCTGCTCCAGCAGAAAGCCAAGCACGGGGAACTTCCAAAGTCCTCC TCGAGGATCCTACCTCGTGAGGTGTGGGACGTAAATCAAGAGGACGAAGTGAAACCAGCCGAGGAGCCGGGTTTG CTCTCCTGGATTACGTCGTATCTGCCTTGGGGGGAAAGTCCGGAACAACGGGCAGAGTCTGTGATCAAGGAAAGT AAGGGCGCAGCGAAGCCATCAGCTGATGCACCATCATCACCGGCATCGAAACCAGCCGAACCTGAACCGAAAGCG CCAGAGTCGAAAAAAGCTTGA |
| Transcript | >Ani_SJS100_1|g5184.t1 ATGTCTCTCACCCTCAAGCTCTCCTCCCTTGTCATCCGCACCTTGTCAAAGCCGATCGCCAACCAAATCAAGGCC CAGGCTCGCGAACATGAACGCTTCCGGCGCATCTGCGTCTCCATGGCGCAAGGTCTCCACCGTATCGACATGCGT CTCCGGCTAGGCAACATCCGCGACAACGCCGCATCGCAAAAACGAGCTGCTGCTGAAAGGGAGCTCCGAAAACAC AAACCCACATCCCCAACGGTCAAGACGGAAGTAGAGGCCAAAGCGGAAGAGGAAGCCATTGCGAAAGCCAAAGCA GCGGCAGAGGAGGCAGCGAAGCCGGCACCGAAACCTCATATTCGACCGTTGTCGGAGTCCAAGGCAATCGAGTCT GGTGCCACATTCATCAGCGAAACATTCTTGTTTATAGTTGCAGGAGGGCTGATTGTTTTTGAGTCGTGGCGGTCG CGGAGAAAGGAAACAACCCGCAGGGAGGATGTTGAGACTCGATTGGCCGAGCTGGAGCAGTCTGAGAAGGCCGCT CGGCTAGCACTGTTGGCCTTGGAGAAGGAGCTGCTCCAGCAGAAAGCCAAGCACGGGGAACTTCCAAAGTCCTCC TCGAGGATCCTACCTCGTGAGGTGTGGGACGTAAATCAAGAGGACGAAGTGAAACCAGCCGAGGAGCCGGGTTTG CTCTCCTGGATTACGTCGTATCTGCCTTGGGGGGAAAGTCCGGAACAACGGGCAGAGTCTGTGATCAAGGAAAGT AAGGGCGCAGCGAAGCCATCAGCTGATGCACCATCATCACCGGCATCGAAACCAGCCGAACCTGAACCGAAAGCG CCAGAGTCGAAAAAAGCTTGA |
| Gene | >Ani_SJS100_1|g5184.t1 ATGTCTCTCACCCTCAAGCTCTCCTCCCTTGTCATCCGCACCTTGTCAAAGCCGATCGCCGTACGCTTAGTCCAC CCTTGCAGTGATGTGCTGCTGACAGGAACTGACTGACACCCCAAAGAACCAAATCAAGGCCCAGGCTCGCGAACA TGAACGCTTCCGGCGCATCTGCGTCTCCATGGCGCAAGGTCTCCACCGTATCGACATGCGTCTCCGGCTAGGCAA CATCCGCGACAACGCCGCATCGCAAAAACGAGCTGCTGCTGAAAGGGAGCTCCGAAAACACAAACCCACATCCCC AACGGTCAAGACGGAAGTAGAGGCCAAAGCGGAAGAGGAAGCCATTGCGAAAGCCAAAGCAGCGGCAGAGGAGGC AGCGAAGCCGGCACCGAAACCTCATATTCGACCGTTGTCGGAGTCCAAGGCAATCGAGTCTGGTGCCACATTCAT CAGCGAAACATTCTTGTTTATAGTTGCAGGAGGGCTGATTGTTTTTGAGTCGTGGCGGTCGCGGAGAAAGGAAAC AACCCGCAGGGAGGATGTTGAGACTCGATTGGCCGAGCTGGAGCAGTCTGAGAAGGCCGCTCGGCTAGCACTGTT GGCCTTGGAGAAGGAGCTGCTCCAGCAGAAAGCCAAGCACGGGGAACTTCCAAAGTCCTCCTCGAGGATCCTACC TCGTGAGGTGTGGGACGTAAATCAAGAGGACGAAGTGAAACCAGCCGAGGAGCCGGGTTTGCTCTCCTGGATTAC GTCGTATCTGCCTTGGGGGGAAAGTCCGGAACAACGGGCAGAGTCTGTGATCAAGGAAAGTAAGGGCGCAGCGAA GCCATCAGCTGATGCACCATCATCACCGGCATCGAAACCAGCCGAACCTGAACCGAAAGCGCCAGAGTCGAAAAA AGCTTGA |